BAC Information

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BAC

Clone NameB6Ng01-147I17
Chromosome14 (Build37)10 (Build37)
Map Location 44,749,621 - 44,750,338104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik
Downstream geneEG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147I17.bB6Ng01-147I17.g
ACCDH944395DH944396
length971971
definitionDH944395|Mus musculus domesticus DNA, BAC clone: B6Ng01-147I17, 5' end.DH944396|Mus musculus domesticus DNA, BAC clone: B6Ng01-147I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,749,621 - 44,750,338)(104,053,903 - 104,054,363)
sequence
gaattcatgtgacatacggtctacttccccaggttttccctgtttcacaa
aggtcaatatctttctcctatacctttaattgtataaaacctggataata
ttttcttactgtgcatatcttgatagttggcattcttcctatatacatat
ccatgtgtttcacaaaatctcccatttataatcccatcttttgcaaggaa
aaactcccttttctttggaacatacaagctcattgacaggacaaatataa
agttgtaaagcttctgtcccatcttcaaattattgacttgcacaccctcc
ctttctaaaagacaaccagacaattaaagtgggcatcattgagaaaaggt
caacctggactgtactgcattgtagcctcatagccatcagtactctaata
tcagtcttcctgagttcccaagtgcaggcatgaggatgctggggttgtat
cataatactatactcatagcaaacataaatctcaggaggtagggcaagga
gtggaatggcctgagttcaggttaaacttcaattttaatgggtccataag
ttcaggatggagtccctttggctctgtcatctgaggcttctgtgttctta
tgctgggtgtgctgaatgtgtgctataatgcatcctgtcctcacagatgc
aagatgaaaaatcatgtatgtcttttactggaagacatctatctgccttt
gactaccacctggagccacacaataccaacatgcagatctcacaattgag
ggggtggatattgttgataccttagaagttgagggccttttcttccaata
tggagcccatattttggcaatgtgatttttcctttggttttttcactaat
ctgtggcttggttgttttctggcctgaaggattctggatgcaccaacaag
gggtctactccatacatgctctttttcatcaagaaaaggattgttgcaga
atcatgccatgccagtaggaa
gaattctcacctgaggaataccaaatggcagagaagcacctgacaaaaaa
tgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
attccacctcacaccagtcagaatggctaagatcaaaaattcaggtgaca
gcagatgatggcgtggatgtggagaaagaggaacactcctccattgttgg
tgggagtgcaggcttgtacaacaactctggaaatcagtctggcggttcct
cagaaaattggacatagtactaccggaggatccagcaatacctctcctgg
gcatatatccagaagatgccccaactggtaagaaggacacatgctccact
atgttcatagcagccttatttataatagccagaagctggaaagaacctag
atgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaa
tggagtactactcagctattaaaaagaatgaatttatgaaattcctagcc
aaatggatggacctggagggcatcatcctgagtgaggtaacacattcaca
aagaaactcacacaatatgtatcactgataagtggatattagccccaaac
ctaggatacccaagatataagatataatttgctaaacacatgaaactcaa
gaagaatgaagactgaagtgtggacactatgccccctccttagatttggg
aacaaaacacccatggaaggagttacagagacaaagtttggagctgagat
gaaaggatggaccatgtagagactgccatatccagggatccaccccataa
tcagcatccaaacgctgacaccattgcatacactagcaagattttattga
aaggacccagatgtagctgtctcttgtgagactatgccggggcctagcaa
acacagaagtggatgctcacagtcagctaatggatggatcatagggctcc
caatggaggagctagagaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44749621_44750338
seq2: B6Ng01-147I17.b_287_1011

seq1  CAAATATAAAGTGGTAAACCTTCTGTCCCATCTTCAAATTATTAACTTGC  50
      |||||||||||| ||||| |||||||||||||||||||||||| ||||||
seq2  CAAATATAAAGTTGTAAAGCTTCTGTCCCATCTTCAAATTATTGACTTGC  50

seq1  ACACCCTCCCTTTCT-AAATAAAACCAGACAATTAAAGTGGGCATCATTG  99
      ||||||||||||||| ||| | ||||||||||||||||||||||||||||
seq2  ACACCCTCCCTTTCTAAAAGACAACCAGACAATTAAAGTGGGCATCATTG  100

seq1  AGCAAAGGTCAACCTGGACTGTACTGCATTGTAGCCTCATAGCCATTAGT  149
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAAAAGGTCAACCTGGACTGTACTGCATTGTAGCCTCATAGCCATCAGT  150

seq1  TCTCTAATATCAGTCTTCCTGAATTCCCAAGTGCAGGCATGAGGATGCTG  199
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTCTAATATCAGTCTTCCTGAGTTCCCAAGTGCAGGCATGAGGATGCTG  200

seq1  GGGTTGTATCATAATACTCTACTCATAGCAAACATAAATCTCAGGAGGTA  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGTTGTATCATAATACTATACTCATAGCAAACATAAATCTCAGGAGGTA  250

seq1  GGGCAAGGAGTGGAATGGCCTGAGTTCAGGTTAAACTTCAATTTTAATGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGGAGTGGAATGGCCTGAGTTCAGGTTAAACTTCAATTTTAATGG  300

seq1  GTCCATAAGTTCAGGATGGAGTCCCTTTGGCTCTGTCATCTGAGGCTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATAAGTTCAGGATGGAGTCCCTTTGGCTCTGTCATCTGAGGCTTCT  350

seq1  GTGTTCTTATGCTGGGTGTGCTGAATGTGTGCTATCATGCAACCTGTCCT  399
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  GTGTTCTTATGCTGGGTGTGCTGAATGTGTGCTATAATGCATCCTGTCCT  400

seq1  CACAGATGAAAGATGAAAAATCATGTATGTCTTTTGTGGGAAGAC----A  445
      |||||||| ||||||||||||||||||||||||||   |||||||    |
seq2  CACAGATGCAAGATGAAAAATCATGTATGTCTTTTACTGGAAGACATCTA  450

seq1  TCTGCCTTTGACTACCACCTGGAGTCACACAATACCAACATGCAGAGCTC  495
      |||||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  TCTGCCTTTGACTACCACCTGGAGCCACACAATACCAACATGCAGATCTC  500

seq1  ACAATTGAGGGGGTGGATATTGTTGATACCTTAGAAGTTGAGGGCCTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGAGGGGGTGGATATTGTTGATACCTTAGAAGTTGAGGGCCTTTT  550

seq1  CTTCCAATATGGAGCCCATATTTTGGCAATGTGATTTTTCCTTTGG-TTT  594
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTCCAATATGGAGCCCATATTTTGGCAATGTGATTTTTCCTTTGGTTTT  600

seq1  TTCACT-ATCTGTGGCTTGGTTGTTTCCTGGCCTAAAGGATTCTGGATGC  643
      |||||| ||||||||||||||||||| ||||||| |||||||||||||||
seq2  TTCACTAATCTGTGGCTTGGTTGTTTTCTGGCCTGAAGGATTCTGGATGC  650

seq1  ACCAACAAGGGGTCTACTCCATACATGCTCTTTTTTATCAAGAAAAGGAT  693
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCAACAAGGGGTCTACTCCATACATGCTCTTTTTCATCAAGAAAAGGAT  700

seq1  TTTTGCATAATCATCCCATGCCAGT  718
      | ||||| |||||| ||||||||||
seq2  TGTTGCAGAATCATGCCATGCCAGT  725

seq1: chr10_104053903_104054363
seq2: B6Ng01-147I17.g_67_539 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||||||||||||||||||| |||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTAGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTTGTACAAGCCTGCACTCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  TCCACATCCACGCCATCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTT--TCAGGTGCTTCTCTGCCATT  438
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTGTCAGGTGCTTCTCTGCCATT  450

seq1  CGGTATTCCTCAGGTGAGAATTC  461
       ||||||||||||||||||||||
seq2  TGGTATTCCTCAGGTGAGAATTC  473