BAC Information

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BAC

Clone NameB6Ng01-149A06
Chromosome14 (Build37)
Map Location 87,637,609 - 87,742,771
singlet/doubletdoublet
Overlap geneEG665324
Upstream geneEG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
Downstream geneTdrd3, LOC100043317, LOC100043780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149A06.bB6Ng01-149A06.g
ACCDH945469DH945470
length1,013708
definitionDH945469|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A06, 5' end.DH945470|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,637,609 - 87,638,617)(87,742,169 - 87,742,771)
sequence
gaattctctctcccctcctctgtgagtgtctgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagatct
atcaacgcagttcttttatttaaagaaaattgatggtgtaagcaaactgt
atttatatagccatcaattctctttataaagatcttccgccaggaaactt
ttgcacctgttaatcagttctaagacacagtaagttgagggagctgatat
tgatgcctaaatcaggccatagcttcagtaagtagggggaatatcaaacc
tgtttgccttcagtcagtacatttttattaggtatccagaatgaggttgt
tttgtacaagagactcaggcaactcaaggcttataaaaatctaataaata
aaggatataaaagtattatagaaaatgaacttttcagaaaaaaatcaaag
ggaaatgcatattttgaatgataatcatcaaggcatattttgtaagatac
cgtgtaagttgtgtcttaaacatgtttgtccagatgccaggaagacagaa
taagggcacaattgggaagaaccatgttttaaatatagtggtgccagtaa
gaaagtaagcaagaaatagggactacataacttacaattcacattttaat
cactaaaaacaaaggcgttactgtccattattctaaggctggcccactgg
ttctgctgttcctgccaagtttgtcgagcttcttgtcagtcaggctgcag
ttagctgggcaatcgtctgggctagactgaataactcacacattaggctt
attagatgggtgggttggctggctactcaagtccctagggtatctccaca
gggtcttcatcttttccataggataatctatgtttgttttaacacatgga
atataagagagcaatattatcatgccaagtctgaaattagactggaacct
ggcacattccatttgaatattacatcctggtgatcaatagacttctctat
ggacagcccagat
gaattccactgtatctgatattgacatctcaagaacgactttaattttaa
ctcttctgaaagttttagatgtgtctcctgaatgcagaacaaagtatgaa
ggttcctttggtctgcgatgtgaaaagtttttctttatattaggtgggtc
atattcatttacatttattgacatgaaagatgtgtctggcctttggtctg
tcgtattgttctatctaaggacaggtatttttttcaagtctttccacagt
aatctgcttcatgcatgtgtggatttttatatttaagaaagtctacattt
ttaatttcctatttatctttataccattaattctatataaaaaccaatga
taataatggcatagtttctctatgtttttgtcagttccttgcctgctctt
tgaatcaataaaattgtatttcttagtgttggttaaatattcttttactc
ctactatttgcctatcaacctgaaataatgtcttgtaaaattgtatttct
gatattatagatgaaacaatcaccatttctatcccacatccttctaattt
attagacaattattccctaaattaaattgagagaacatgcaaagttcctt
tctgccaccctggtctcttttgttgttgttgtagtctttgttctgtttgt
taaaaaatatttaaactttcctgtagtttggggttttgttgtttggttgg
gggtgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_87637609_87638617
seq2: B6Ng01-149A06.b_48_1060

seq1  GAATTCTCTCTCCCCTCCTCTGTGAGTGTCTGTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCCCCTCCTCTGTGAGTGTCTGTGTGTGTGTGTGTGTGTG  50

seq1  TGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCT  100

seq1  ATCAACGCAGTTCTTTTATTTAAAGAAAATTGATGGTGTAAGCAAACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACGCAGTTCTTTTATTTAAAGAAAATTGATGGTGTAAGCAAACTGT  150

seq1  ATTTATATAGCCATCAATTCTCTTTATAAAGATCTTCCGCCAGGAAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATAGCCATCAATTCTCTTTATAAAGATCTTCCGCCAGGAAACTT  200

seq1  TTGCACCTGTTAATCAGTTCTAAGACACAGTAAGTTGAGGGAGCTGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCTGTTAATCAGTTCTAAGACACAGTAAGTTGAGGGAGCTGATAT  250

seq1  TGATGCCTAAATCAGGCCATAGCTTCAGTAAGTAGGGGGAATATCAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTAAATCAGGCCATAGCTTCAGTAAGTAGGGGGAATATCAAACC  300

seq1  TGTTTGCCTTCAGTCAGTACATTTTTATTAGGTATCCAGAATGAGGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTTCAGTCAGTACATTTTTATTAGGTATCCAGAATGAGGTTGT  350

seq1  TTTGTACAAGAGACTCAGGCAACTCAAGGCTTATAAAAATCTAATAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACAAGAGACTCAGGCAACTCAAGGCTTATAAAAATCTAATAAATA  400

seq1  AAGGATATAAAAGTATTATAGAAAATGAACTTTTCAGAAAAAAATCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATAAAAGTATTATAGAAAATGAACTTTTCAGAAAAAAATCAAAG  450

seq1  GGAAATGCATATTTTGAATGATAATCATCAAGGCATATTTTGTAAGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCATATTTTGAATGATAATCATCAAGGCATATTTTGTAAGATAC  500

seq1  CGTGTAAGTTGTGTCTTAAACATGTTTGTCCAGATGCCAGGAAGACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAAGTTGTGTCTTAAACATGTTTGTCCAGATGCCAGGAAGACAGAA  550

seq1  TAAGGGCACAATTGGGAAGAACCATGTTTTAAATATAGTGGTGCCAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCACAATTGGGAAGAACCATGTTTTAAATATAGTGGTGCCAGTAA  600

seq1  GAAAGTAAGCAAGAAATAGGGACTACATAACTTACAATTCACATTTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAGCAAGAAATAGGGACTACATAACTTACAATTCACATTTTAAT  650

seq1  CACTAAAAACAAAGGCGTTACTGTCCATTATTCTAAGGCTGGCCCACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAAACAAAGGCGTTACTGTCCATTATTCTAAGGCTGGCCCACTGG  700

seq1  TTCTGCTGTTCCTGCCAAG-TTGTCGAGCTTCTTGTCAGTCAGGCTGCAG  749
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCTGCTGTTCCTGCCAAGTTTGTCGAGCTTCTTGTCAGTCAGGCTGCAG  750

seq1  TTAGCTGGGCAATCGTCTGGGCTAGACTGAAATAACTCACACATTAGGCT  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTAGCTGGGCAATCGTCTGGGCTAGACTG-AATAACTCACACATTAGGCT  799

seq1  TATTAGATGG--TGGTTGGCTGGCTACTCAAGTCCCTA-GGTATCTCCAC  846
      ||||||||||   ||||||||||||||||||||||||| |||||||||||
seq2  TATTAGATGGGTGGGTTGGCTGGCTACTCAAGTCCCTAGGGTATCTCCAC  849

seq1  AGGGTC-TCATC-TTTCCATAGGATAATCTATGTTTGTTTTAACACATGG  894
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTCATCTTTTCCATAGGATAATCTATGTTTGTTTTAACACATGG  899

seq1  AATATAAGAGAGCAATATTAGCATGCCAAGGTCTGAAATTAAGACTTGAA  944
      |||||||||||||||||||| |||||||| |||||||||| ||||| |||
seq2  AATATAAGAGAGCAATATTATCATGCCAA-GTCTGAAATT-AGACTGGAA  947

seq1  CCTGGCACATTCCAATTTGATATTACATCCTGTTGATCAA-AGACTATCT  993
      |||||||||||||| ||  ||||||||||||| ||||||| ||||| |||
seq2  CCTGGCACATTCCATTTGAATATTACATCCTGGTGATCAATAGACT-TCT  996

seq1  CAAT-GACAGCCCAGAT  1009
      | || ||||||||||||
seq2  CTATGGACAGCCCAGAT  1013

seq1: chr14_87742169_87742771
seq2: B6Ng01-149A06.g_175_778 (reverse)

seq1  AGACACCCCCAACCAAACAACAAAACCCCAAACTACAGGAAAGTTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCCCAACCAAACAACAAAACCCCAAACTACAGGAAAGTTTAAAT  50

seq1  A-TTTTTAACAAACAGAACAAAGACTACAACAACAACAAAAGAGACCAGG  99
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAACAAACAGAACAAAGACTACAACAACAACAAAAGAGACCAGG  100

seq1  GTGGCAGAAAGGAACTTTGCATGTTCTCTCAATTTAATTTAGGGAATAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAAAGGAACTTTGCATGTTCTCTCAATTTAATTTAGGGAATAAT  150

seq1  TGTCTAATAAATTAGAAGGATGTGGGATAGAAATGGTGATTGTTTCATCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATAAATTAGAAGGATGTGGGATAGAAATGGTGATTGTTTCATCT  200

seq1  ATAATATCAGAAATACAATTTTACAAGACATTATTTCAGGTTGATAGGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCAGAAATACAATTTTACAAGACATTATTTCAGGTTGATAGGCA  250

seq1  AATAGTAGGAGTAAAAGAATATTTAACCAACACTAAGAAATACAATTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAGGAGTAAAAGAATATTTAACCAACACTAAGAAATACAATTTTA  300

seq1  TTGATTCAAAGAGCAGGCAAGGAACTGACAAAAACATAGAGAAACTATGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCAAAGAGCAGGCAAGGAACTGACAAAAACATAGAGAAACTATGC  350

seq1  CATTATTATCATTGGTTTTTATATAGAATTAATGGTATAAAGATAAATAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTATCATTGGTTTTTATATAGAATTAATGGTATAAAGATAAATAG  400

seq1  GAAATTAAAAATGTAGACTTTCTTAAATATAAAAATCCACACATGCATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAAATGTAGACTTTCTTAAATATAAAAATCCACACATGCATGA  450

seq1  AGCAGATTACTGTGGAAAGACTTGAAAAAAATACCTGTCCTTAGATAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATTACTGTGGAAAGACTTGAAAAAAATACCTGTCCTTAGATAGAA  500

seq1  CAATACGACAGACCAAAGGCCAGACACATCTTTCATGTCAATAAATGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACGACAGACCAAAGGCCAGACACATCTTTCATGTCAATAAATGTAA  550

seq1  ATGAATATGACCCACCTAATATAAAGAAAAACTTTTCACATCGCAGACCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATGACCCACCTAATATAAAGAAAAACTTTTCACATCGCAGACCA  600

seq1  AAGG  603
      ||||
seq2  AAGG  604