BAC Information

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BAC

Clone NameB6Ng01-149D16
Chromosome14 (Build37)
Map Location 83,972,852 - 84,091,396
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043773
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149D16.bB6Ng01-149D16.g
ACCDH945625DH945626
length1,1581,143
definitionDH945625|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D16, 5' end.DH945626|Mus musculus domesticus DNA, BAC clone: B6Ng01-149D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,090,228 - 84,091,396)(83,972,852 - 83,973,989)
sequence
gaattcctgtatatattccctttagtcaattaaataatttagagattttg
agaaatatatttctagtatgttttactaaaactgttgtaactgacaaata
aatcattgtatctgaacattaatctgtttctagaggagcgaatattgggc
agtagaaagattttgtgcatgtttatatgtatggattaacacagtgatta
actctgagtcatcaggaatacatcaatactgcttcaaagaagaaattaaa
gaactccacttggaataatttaaccaaaagcaaaaccagatttaaaatct
gcactgtataatccctgcattctgtcttctgtctgctgaatatatgtcta
cctaaagtctttcttttgtgtctgtttatccctgtgactatgtgttcaat
gtgtgtcttttgaatgagtttgtgtgtctatgagaggtgttcgttcttaa
cagaagttttgattctgtgtttactgaagagggattgcatcataagggct
gaaagacctggatctgtcctttaacagagatttataagggattaagtcac
ttactccatctgatcccaactgacccagacagcaaacatcattttcatta
atcaatatccatatatagttgctttcattgtttctcacaaattttaggaa
gttgcttgcaaagtctatgtttgttgctcacagaagacacatgtattttt
ctgggttagtaaatgtaagagcttataatttagattgttgctgtgcatta
gcttcatttgtaaaagcagactgcatgagatacacaaagcaaaggctgat
tgttgcagtgtattcttaaagtcaggtaaataaaagagtttgattacaca
gtactctagaagtctaaatcttaagtgtgataaaatatattatcaaagtc
tggcagtgaggactaacaaaaattagagcattttaggatgtgggagtttt
ttcagaagtttcatcatcaccatttattttatgtgtaagaaagaagtaga
actggttacaatgactaaaacatatgatggaactttatcctgtaatacgg
aacttaagacaaagtaagttggagatacactaaccagggaaattatatcc
taagggggaggtattgtttacaacatatgaagaaaaattcaaacaattaa
cttacaaa
gaattcccttctcttccatggtataagtgacagctcagttgttaaaattt
accctagaggataaatttgcattcattcattcattcattcattcattcat
tcattcattcattcattttatacatgtgaaattaaatataataagacaaa
ataaaaactatcagattaaggttggaaaagacaaaccagtaaaaggaaaa
ctacccaaatggaagtaaaaagagacccactgattcacatactcaaatgt
cccatacaaagtactaaactggaaccataatgtatgtccagaaggactag
tgcagacttttgtggggcctgtgtatgctgcttcagtctctgtgagttca
aatgtacatttaagttgatttaaagagccttcttttgcttggtgtcctct
atacctctggctcttagactctttctgtggttgaggttctctgaactcca
agggaaggaactttatgaagctatcccatttagggcaaagtatcccaagg
ttccttactgtcttcttaacatctggttatgagtctctccatttgtttcc
atctgctgcagaaggaagcttccatgatgatgagggagtaatgctcaaat
ctgtgagtacaacagactgtcatttgcaatcattttatcacttctgtctt
taaaaccgtgatacatgcttttatcctaggtcccttgcctatctagtctt
ggctttcggtcacatgggcagtgttggttatgtgtaggccttattcaagt
cagttttgttgttttacccccccctttttctttacttttaacaatagaat
ttctttaaaaaataatgtcatcattcaaaattgttaattactattgcagg
ctcgatgttttaccttcctttttcaggctcatttaaatttgtcctgaata
atttgttacaacactatgtggcttgttcatcatagtaacttcttttgatg
tagagaaaccttttgtctaaagacttatttaccagtgtaatttacaaatg
agtgaatataggcccaggaaagcatcataattaatcataaaacacgctag
gagaatggatctatttcatactcttctgaattaactatttgtctagcctg
gactaatagtttcatacttactctaaaataatatttattaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84090228_84091396
seq2: B6Ng01-149D16.b_44_1201 (reverse)

seq1  TTTGTAAGTAAATGGTTTGAAATTTTTCTTCATATGTTGTAAACATTA-C  49
      ||||||||| ||| ||||| ||||||||||||||||||||||||| || |
seq2  TTTGTAAGTTAATTGTTTG-AATTTTTCTTCATATGTTGTAAACAATACC  49

seq1  TCTCCCTTTAGATATAATTTTCCTGTGTTTTATTTTGTTTTTTCTTCCAA  99
      || |||||  |||||||||| ||||        || || | |   |||||
seq2  TCCCCCTTAGGATATAATTTCCCTG-------GTTAGTGTAT--CTCCAA  90

seq1  CCTACTTATGTCTTTAGTTCCCGTA-TACAGGATAGAGTTCCATCATATG  148
      | ||||| |||||| |||| ||||| ||||||||| ||||||||||||||
seq2  CTTACTT-TGTCTTAAGTT-CCGTATTACAGGATAAAGTTCCATCATATG  138

seq1  TTTTAGTCATTGTTACCAGTTCTACTTCTTTCTTACACATAAAATAAATG  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCATTGTAACCAGTTCTACTTCTTTCTTACACATAAAATAAATG  188

seq1  GTGATGATGAAAACTTCTGAAAATATCTCCCACATCCTAAAATGCTCTAA  248
      ||||||||| ||||||||||||| | ||||||||||||||||||||||||
seq2  GTGATGATG-AAACTTCTGAAAA-AACTCCCACATCCTAAAATGCTCTAA  236

seq1  TTTTTGTTAGTCCTCACTGCCAGAC-TTGATAATATATTTTAATCACACT  297
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  TTTTTGTTAGTCCTCACTGCCAGACTTTGATAATATATTTT-ATCACACT  285

seq1  TAAGATTTAGACTTCTAGAGTACTGTGTAATCAAACTCTTTATTTAACCT  347
      |||||||||||||||||||||||||||||||||||||||||  || ||||
seq2  TAAGATTTAGACTTCTAGAGTACTGTGTAATCAAACTCTTTTATTTACCT  335

seq1  GACTTTAAGAATACACTGCAACAATCAGCC-TTGCTTTGTGTATCTCATG  396
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACTTTAAGAATACACTGCAACAATCAGCCTTTGCTTTGTGTATCTCATG  385

seq1  CAGTCTGCTTTTACAAATGAAGCTAATGCACAGCAACAATCTAAATTATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCTTTTACAAATGAAGCTAATGCACAGCAACAATCTAAATTATA  435

seq1  AGCTCTTACATTTACTAACCCAGAAAAATACATGTGTCTTCTGTGAGCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTACATTTACTAACCCAGAAAAATACATGTGTCTTCTGTGAGCAA  485

seq1  CAAACATAGACTTTGCAAGCAACTTCCTAAAATTTGTGAGAAACAATGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATAGACTTTGCAAGCAACTTCCTAAAATTTGTGAGAAACAATGAA  535

seq1  AGCAACTATATATGGATATTGATTAATGAAAATGATGTTTGCTGTCTGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTATATATGGATATTGATTAATGAAAATGATGTTTGCTGTCTGGG  585

seq1  TCAGTTGGGATCAGATGGAGTAAGTGACTTAATCCCTTATAAATCTCTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGGATCAGATGGAGTAAGTGACTTAATCCCTTATAAATCTCTGT  635

seq1  TAAAGGACAGATCCAGGTCTTTCAGCCCTTATGATGCAATCCCTCTTCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGACAGATCCAGGTCTTTCAGCCCTTATGATGCAATCCCTCTTCAG  685

seq1  TAAACACAGAATCAAAACTTCTGTTAAGAACGAACACCTCTCATAGACAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAGAATCAAAACTTCTGTTAAGAACGAACACCTCTCATAGACAC  735

seq1  ACAAACTCATTCAAAAGACACACATTGAACACATAGTCACAGGGATAAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCATTCAAAAGACACACATTGAACACATAGTCACAGGGATAAAC  785

seq1  AGACACAAAAGAAAGACTTTAGGTAGACATATATTCAGCAGACAGAAGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAAAGAAAGACTTTAGGTAGACATATATTCAGCAGACAGAAGAC  835

seq1  AGAATGCAGGGATTATACAGTGCAGATTTTAAATCTGGTTTTGCTTTTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCAGGGATTATACAGTGCAGATTTTAAATCTGGTTTTGCTTTTGG  885

seq1  TTAAATTATTCCAAGTGGAGTTCTTTAATTTCTTCTTTGAAGCAGTATTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATTCCAAGTGGAGTTCTTTAATTTCTTCTTTGAAGCAGTATTG  935

seq1  ATGTATTCCTGATGACTCAGAGTTAATCACTGTGTTAATCCATACATATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCCTGATGACTCAGAGTTAATCACTGTGTTAATCCATACATATA  985

seq1  AACATGCACAAAATCTTTCTACTGCCCAATATTCGCTCCTCTAGAAACAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCACAAAATCTTTCTACTGCCCAATATTCGCTCCTCTAGAAACAG  1035

seq1  ATTAATGTTCAGATACAATGATTTATTTGTCAGTTACAACAGTTTTAGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTCAGATACAATGATTTATTTGTCAGTTACAACAGTTTTAGTA  1085

seq1  AAACATACTAGAAATATATTTCTCAAAATCTCTAAATTATTTAATTGACT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACTAGAAATATATTTCTCAAAATCTCTAAATTATTTAATTGACT  1135

seq1  AAAGGGAATATATACAGGAATTC  1169
      |||||||||||||||||||||||
seq2  AAAGGGAATATATACAGGAATTC  1158

seq1: chr14_83972852_83973989
seq2: B6Ng01-149D16.g_67_1209

seq1  GAATTCCCTTCTCTTCCATGGTATAAGTGACAGCTCAGTTGTTAAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCTCTTCCATGGTATAAGTGACAGCTCAGTTGTTAAAATTT  50

seq1  ACCCTAGAGGATAAATTTGCATTCATTCATTCATTCATTCATTCATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGAGGATAAATTTGCATTCATTCATTCATTCATTCATTCATTCAT  100

seq1  TCATTCATTCATTCATTTTATACATGTGAAATTAAATATAATAAGACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTCATTCATTTTATACATGTGAAATTAAATATAATAAGACAAA  150

seq1  ATAAAAACTATCAGATTAAGGTTGGAAAAGACAAACCAGTAAAAGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACTATCAGATTAAGGTTGGAAAAGACAAACCAGTAAAAGGAAAA  200

seq1  CTACCCAAATGGAAGTAAAAAGAGACCCACTGATTCACATACTCAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAAATGGAAGTAAAAAGAGACCCACTGATTCACATACTCAAATGT  250

seq1  CCCATACAAAGTACTAAACTGGAACCATAATGTATGTCCAGAAGGACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACAAAGTACTAAACTGGAACCATAATGTATGTCCAGAAGGACTAG  300

seq1  TGCAGACTTTTGTGGGGCCTGTGTATGCTGCTTCAGTCTCTGTGAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTTTTGTGGGGCCTGTGTATGCTGCTTCAGTCTCTGTGAGTTCA  350

seq1  AATGTACATTTAAGTTGATTTAAAGAGCCTTCTTTTGCTTGGTGTCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACATTTAAGTTGATTTAAAGAGCCTTCTTTTGCTTGGTGTCCTCT  400

seq1  ATACCTCTGGCTCTTAGACTCTTTCTGTGGTTGAGGTTCTCTGAACTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTGGCTCTTAGACTCTTTCTGTGGTTGAGGTTCTCTGAACTCCA  450

seq1  AGGGAAGGAACTTTATGAAGCTATCCCATTTAGGGCAAAGTATCCCAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGAACTTTATGAAGCTATCCCATTTAGGGCAAAGTATCCCAAGG  500

seq1  TTCCTTACTGTCTTCTTAACATCTGGTTATGAGTCTCTCCATTTGTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACTGTCTTCTTAACATCTGGTTATGAGTCTCTCCATTTGTTTCC  550

seq1  ATCTGCTGCAGAAGGAAGCTTCCATGATGATGAGGGAGTAATGCTCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGCAGAAGGAAGCTTCCATGATGATGAGGGAGTAATGCTCAAAT  600

seq1  CTGTGAGTACAACAGACTGTCATTTGCAATCATTTTATCACTTCTGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTACAACAGACTGTCATTTGCAATCATTTTATCACTTCTGTCTT  650

seq1  TAAAACCGTGATACATGCTTTTATCCTAGGTCCCTTGCCTATCTAGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCGTGATACATGCTTTTATCCTAGGTCCCTTGCCTATCTAGTCTT  700

seq1  GGCTTTCGGTCACATGGGCAGTGTTGGTTATGTGTAGGCCTTATTCAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCGGTCACATGGGCAGTGTTGGTTATGTGTAGGCCTTATTCAAGT  750

seq1  CAGTTTTGTTGTTTTACCCCCCCCTTTTTCTTTACTTTTAACAATAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGTTGTTTTACCCCCCCCTTTTTCTTTACTTTTAACAATAGAAT  800

seq1  TTCTTTAAAAAAATAATGTCATCATTCAAAATTGTTAATTACTATTGCAG  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTT-AAAAAATAATGTCATCATTCAAAATTGTTAATTACTATTGCAG  849

seq1  GCTCGATGTTTTACCTTCCTTTTACAGGCTCATTTAAATTTGTCCTG-AT  899
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  GCTCGATGTTTTACCTTCCTTTTTCAGGCTCATTTAAATTTGTCCTGAAT  899

seq1  AATTTGTTACAACACTATGTGGCTTGTTCATCATAGTAACTTCTTTTGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTACAACACTATGTGGCTTGTTCATCATAGTAACTTCTTTTGAT  949

seq1  GTAGAGAAACCTTTTGTCTAAAGACTTATTTACCAGTGT-ATTTACAAAT  998
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTAGAGAAACCTTTTGTCTAAAGACTTATTTACCAGTGTAATTTACAAAT  999

seq1  GAGTG-ATATAGG-CCAGGAAAGCATCATAATTTATCATAAACACA-GCT  1045
      ||||| ||||||| ||||||||||||||||||| |||||||| ||| |||
seq2  GAGTGAATATAGGCCCAGGAAAGCATCATAATTAATCATAAA-ACACGCT  1048

seq1  A-GAGAAT-GATCTATTTCATACTCTTCTGAATTTAACTATTTGTCTAG-  1092
      | |||||| ||||||||||||||||||||||| |||||||||||||||| 
seq2  AGGAGAATGGATCTATTTCATACTCTTCTGAA-TTAACTATTTGTCTAGC  1097

seq1  CTGGACTAATAGTTTTCAATAACTTACT---AAATAATTATTTA-TAAGC  1138
      |||||||||||| |||||   |||||||   |||||| |||||| |||||
seq2  CTGGACTAATAG-TTTCA--TACTTACTCTAAAATAA-TATTTATTAAGC  1143