BAC Information

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BAC

Clone NameB6Ng01-152E03
Chromosome14 (Build37)
Map Location 6,601,651 - 6,742,703
singlet/doubletdoublet
Overlap geneLOC100041442, LOC100041848, LOC100041456, LOC100041758, LOC100041470
Upstream geneLOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817, LOC100041431, LOC100041438
Downstream geneLOC100041804, LOC100041487, LOC100041747, LOC100041507, LOC100041836, LOC100041728, LOC100041774, LOC100041530, LOC100041540, LOC100041840, EG666844, LOC666851, LOC100041569, LOC100041970, LOC100042000, EG666874, B930046C15Rik, LOC100041600, LOC100041958, LOC100041964, LOC546590, LOC666906, LOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152E03.bB6Ng01-152E03.g
ACCDH947875DH947876
length1,1191,097
definitionDH947875|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E03, 5' end.DH947876|Mus musculus domesticus DNA, BAC clone: B6Ng01-152E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,601,651 - 6,602,300)(6,741,589 - 6,742,703)
sequence
gaattccttgatccacttagatatgaccttagtacaaggagataggaatg
gatcaattcccattcttctacatgttacccgccagtagtgccagcaccat
tttttgaaaatgctgccttttctccactggatggttttagctcccttgtc
aaggatcaaatgaccataggtgtgtgggttcatttctgtgtattcaattc
tattccattggtctacttgtctatcgttataccaagaccatgcaattttg
gatcacaattgctctgtagtacagctttaggtcaggctaccaacaacaat
ttaaaaaaaaaaaccttctgagggctggaattacaagcttgtaccaaatc
tggtcaacttttgtatgtatttccaccagaggttcttttatcctggagaa
cagtttttgctatcctaggttttttgtaattccagatgaatttgcagatt
gccctttctaattcattgaagaattgagttggaattttgatgaagattgc
attgaatctgtagattgcatttgacaagatagccatttttactatattga
tcctgctaatccatgagcatagaagacctttccatcttctgagatcttct
ttaatatctttcttcagagacttgaagttcatatcatacagatcttttac
ttccttagttagagtaacacgaaggtattttctattggtttttactcttg
tgaacagtgttgtttccgtaagttctttctcagcccatttcaaaagacca
agtcagaatcagtgtcaatctctttctctctccagatcaggatgttagta
agctcttagctgttgctctagcactaggcctgcctgtctgggggccatac
ttccaaacatgatgaccatggactctatgaaactctaagcaagccctcag
ataaaagcttcattgtatgttaccttgtttatagtatttcatcacagcat
agaacagtgactaccacaggcagtaagaatttctcccagcttacagttta
tagaacatcatgactgaagtcatgcagacgccatggtgggagcctgctat
caacttgtcctcatggcttcttcagctgctttttttaccacaagaaccac
ctgcaaggcattcacttct
gaattcaccatgacctcctcattctgggtaattctccctgaaatgtggat
tatatagtttggccaaattcataggactaggccaaagatcaagagtcctt
gttctgaaagaaaaaaaaaaaggagaaatgtcctcatagtttctgtatac
ccacacctgtgtcataaactactgagagtttagagaccttgtctgtccct
ccaggcctatgcgggagctcaaacaactagaactctaaccgcctggacac
ccagcctctggagacctttggacaagatagcaagattaataagcttagat
gatcctagtacataggaggtagaaggtaacatactgtgagcttggatagt
tcagaatccatcctggattcaggtgacccttgaagcctgtgttcttggga
ctctttgctcttggggccaggcccaaccaaagatcaaatccttactatga
aaaattgaaagtggagactaagcaggtaatgttggacctgcagagcttac
agaatgtgtacactgaggcctcagagacatttgaattcctggcaaagaca
aaggctgctataggtaactgtctgtcttgcttgggagcacatgagctgta
gaattgccatctctgattttgatcctgcacaggagactctcgagctctgg
ttcttgctttctgccacttcacacaggagcctttagatttttctgttgta
aacctgtgggttgaaacactttttggggtaaaaaaaaaggtcaaaggacc
ctttcacagaggttgtgtatcagacaatcctttatctcagacacttctat
tatggcttataacagtacaaaaattatagtacccaagtagcaatgaaaat
aatcttaagtttgggaggtcactgcattaaagcatccacagcatttggta
aattgagaaactctggtcttgacagaagaactatttgtatcatgtgaggt
ctcttgacccccggggctgagtcagatctatagagagctagttacagcag
acccatgtatagcaagattcccttgttctctttcatcaaagtgcttggcc
atccttcgtgagttctccataggatgaccgatgggacaactgtagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_6601651_6602300
seq2: B6Ng01-152E03.b_524_1164

seq1  TTGGAATTTTGATGAAGATTGCATTGAATCTGTAGATTGCATTTGACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTTTGATGAAGATTGCATTGAATCTGTAGATTGCATTTGACAAG  50

seq1  ATAGCCATTTTTACTATATTGATCCTGCTAATCCATGAGCATAGAAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCATTTTTACTATATTGATCCTGCTAATCCATGAGCATAGAAGACC  100

seq1  TTTCCATCTTCTGAGATCTTCTTTAATATCTTTCTTCAGAGACTTGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCTTCTGAGATCTTCTTTAATATCTTTCTTCAGAGACTTGAAGT  150

seq1  TCATATCATACAGATCTTTTACTTCCTTAGTTAGAGTAACACGAAGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCATACAGATCTTTTACTTCCTTAGTTAGAGTAACACGAAGGTAT  200

seq1  TTTCTATTGGTTTTTACTCTTGTGAACAGTGTTGTTTCCGTAAGTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTGGTTTTTACTCTTGTGAACAGTGTTGTTTCCGTAAGTTCTTT  250

seq1  CTCAGCCCATTTCAAAAGACCAAGTCAGAATCAGTGTCAATCTCTTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCATTTCAAAAGACCAAGTCAGAATCAGTGTCAATCTCTTTCTC  300

seq1  CCTCCAGATCAGGATGTTAGTAAGCTCTTAGCTGTTGCTCTAGCACTAGG  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGATCAGGATGTTAGTAAGCTCTTAGCTGTTGCTCTAGCACTAGG  350

seq1  CCTGCCTGTCTGGGGGCCATACTTCCAAACATGATGACCATGGACTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGTCTGGGGGCCATACTTCCAAACATGATGACCATGGACTCTAT  400

seq1  GAAACTCTAAGCAAGCCCTCAGATAAAAGCTTCATTGTATGTTACCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTAAGCAAGCCCTCAGATAAAAGCTTCATTGTATGTTACCTTGT  450

seq1  TTATAGTATTTCATCACAGCAATAGAACAGTGACTACCACAGGCAGTAAA  500
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  TTATAGTATTTCATCACAGC-ATAGAACAGTGACTACCACAGGCAGT-AA  498

seq1  GAATTTCTCCCAGCTTACAG-TTATAGACCATCATGAACTGAAGTCAGTG  549
      |||||||||||||||||||| ||||||| ||||||| |||||||||| ||
seq2  GAATTTCTCCCAGCTTACAGTTTATAGAACATCATG-ACTGAAGTCA-TG  546

seq1  CAGGACGCCATGGTGGAGCCCTGCTTACAAGCTTGCTCCTCATGGCTTCT  599
      || |||||||||||||   ||||||  ||| |||| ||||||||||||||
seq2  CA-GACGCCATGGTGGGAGCCTGCTATCAA-CTTG-TCCTCATGGCTTCT  593

seq1  TCAGCCTGCTTTCTTATACCAC-AGGACCACCTGCCAAGGCAATCCACTT  648
      |||| ||||||| || |||||| || |||||||| |||||| || |||||
seq2  TCAG-CTGCTTT-TTTTACCACAAGAACCACCTG-CAAGGC-ATTCACTT  639

seq1  CT  650
      ||
seq2  CT  641

seq1: chr14_6741589_6742703
seq2: B6Ng01-152E03.g_68_1164 (reverse)

seq1  GACTACAGTTGTCCCTACCTGTCCATCCTAATGGAGAAACATCACGAAGG  50
      ||||||||||||||| | | || |||||| ||||||||   |||||||||
seq2  GACTACAGTTGTCCC-ATCGGT-CATCCT-ATGGAGAA--CTCACGAAGG  45

seq1  AATGGGCAAAGGCACTATGAATTGGAAAGGAGAAACAAGGGGAATACTTG  100
       |||| |||  ||||| |||  ||  || ||| ||||| |||||| ||||
seq2  -ATGGCCAA--GCACTTTGA--TG--AAAGAG-AACAA-GGGAAT-CTTG  85

seq1  CTATACATGGGTCTGCTGGTAACTAGCTCTCTATAGATCCTGACTCAGCC  150
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  CTATACATGGGTCTGCT-GTAACTAGCTCTCTATAGAT-CTGACTCAGCC  133

seq1  CCGGGGGTCAAGAAGACCTCACATGATACAAATAGTTCTTCTGTCAAGAC  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCGGGGGTCAAG-AGACCTCACATGATACAAATAGTTCTTCTGTCAAGAC  182

seq1  CAGGGTTTCTCAATTTACCAAATGCTGTGGATGCTTTAATGCAGTGACCT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCTCAATTTACCAAATGCTGTGGATGCTTTAATGCAGTGACCT  232

seq1  CCCAAACTTAAGATTATTTTCATTGCTACTTGGGTACTATAATTTTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTTAAGATTATTTTCATTGCTACTTGGGTACTATAATTTTTGTA  282

seq1  CTGTTATAAGCCATAATAGAAGTGTCTGAGATAAAGGATTGTCTGATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATAAGCCATAATAGAAGTGTCTGAGATAAAGGATTGTCTGATACA  332

seq1  CAACCTCTGTGAAAGGGTCCTTTGACCTTTTTTTTTACCCCAAAAAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCTGTGAAAGGGTCCTTTGACCTTTTTTTTTACCCCAAAAAGTGT  382

seq1  TTCAACCCACAGGTTTACAACAGAAAAATCTAAAGGCTCCTGTGTGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCCACAGGTTTACAACAGAAAAATCTAAAGGCTCCTGTGTGAAGT  432

seq1  GGCAGAAAGCAAGAACCAGAGCTCGAGAGTCTCCTGTGCAGGATCAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAGCAAGAACCAGAGCTCGAGAGTCTCCTGTGCAGGATCAAAAT  482

seq1  CAGAGATGGCAATTCTACAGCTCATGTGCTCCCAAGCAAGACAGACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGGCAATTCTACAGCTCATGTGCTCCCAAGCAAGACAGACAGTT  532

seq1  ACCTATAGCAGCCTTTGTCTTTGCCAGGAATTCAAATGTCTCTGAGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAGCAGCCTTTGTCTTTGCCAGGAATTCAAATGTCTCTGAGGCCT  582

seq1  CAGTGTACACATTCTGTAAGCTCTGCAGGTCCAACATTACCTGCTTAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACACATTCTGTAAGCTCTGCAGGTCCAACATTACCTGCTTAGTC  632

seq1  TCCACTTTCAATTTTTCATAGTAAGGATTTGATCTTTGGTTGGGCCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTCAATTTTTCATAGTAAGGATTTGATCTTTGGTTGGGCCTGGC  682

seq1  CCCAAGAGCAAAGAGTCCCAAGAACACAGGCTTCAAGGGTCACCTGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGCAAAGAGTCCCAAGAACACAGGCTTCAAGGGTCACCTGAATC  732

seq1  CAGGATGGATTCTGAACTATCCAAGCTCACAGTATGTTACCTTCTACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGATTCTGAACTATCCAAGCTCACAGTATGTTACCTTCTACCTC  782

seq1  CTATGTACTAGGATCATCTAAGCTTATTAATCTTGCTATCTTGTCCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTACTAGGATCATCTAAGCTTATTAATCTTGCTATCTTGTCCAAAG  832

seq1  GTCTCCAGAGGCTGGGTGTCCAGGCGGTTAGAGTTCTAGTTGTTTGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGAGGCTGGGTGTCCAGGCGGTTAGAGTTCTAGTTGTTTGAGCT  882

seq1  CCCGCATAGGCCTGGAGGGACAGACAAGGTCTCTAAACTCTCAGTAGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCATAGGCCTGGAGGGACAGACAAGGTCTCTAAACTCTCAGTAGTTT  932

seq1  ATGACACAGGTGTGGGTATACAGAAACTATGAGGACATTTCTCCTTTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACAGGTGTGGGTATACAGAAACTATGAGGACATTTCTCCTTTTTT  982

seq1  TTTTTCTTTCAGAACAAGGACTCTTGATCTTTGGCCTAGTCCTATGAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTCAGAACAAGGACTCTTGATCTTTGGCCTAGTCCTATGAATT  1032

seq1  TGGCCAAACTATATAATCCACATTTCAGGGAGAATTACCCAGAATGAGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAACTATATAATCCACATTTCAGGGAGAATTACCCAGAATGAGGA  1082

seq1  GGTCATGGTGAATTC  1115
      |||||||||||||||
seq2  GGTCATGGTGAATTC  1097