BAC Information

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BAC

Clone NameB6Ng01-152G01
Chromosome14 (Build37)
Map Location 54,323,502 - 54,441,156
singlet/doubletdoublet
Overlap geneOTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Upstream geneLOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik
Downstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152G01.bB6Ng01-152G01.g
ACCDH947967DH947968
length1,1121,144
definitionDH947967|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G01, 5' end.DH947968|Mus musculus domesticus DNA, BAC clone: B6Ng01-152G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,323,502 - 54,324,626)(54,440,165 - 54,441,156)
sequence
gaattcacttccttgtgtgctgattctgaaggcttgtgacagaagcaact
cttatttctcagtggctgaggtgactccagaggtagaattgtcactgaga
aagaacaacatcctgagagttatagctgacctgctagtcaccacagtctc
tactggattttaatttaattgggaagagcaatgaaaacatatgctcctac
attattcatgtttctatggctgcagctggatggtgagttaatatctgaag
gtcatagaacaatcagggggcatttctgagacacccagggggaaactcta
ttcaggtttattctagttactctagaaaaagagactcctggaaagggggt
gacctcacagactttctccttttatttcattccatatttctgcataggga
tgagccaaggcgagcaggtggagcagcttccttccatcctgagagtccag
gagggatccagtgccagcatcaactgcagttatgaagacagtgcctccaa
ctacttcccttggtataagcaagaacctggagagaatcctaagctcatca
ttgacattcgttcaaatatggaaagaaagcagatccaagaactcatcgtt
ttactggataagaaagccaaacgcttctccctgcacatcacagacaccca
gcctggagactcagccatgtacttctgtgctgcaagtgcacactgctcca
cgggcacctgcagcctgtcctcaaacctgccatggggcctggagcctcat
ctacatcctgtgtcacaggccttccagggcagaatttgccagttgttagt
ttgaggtgacaactaatatagacattaaaaatacaaaataagaacgttaa
tttcaagtcacacaaacaatttggacatttcctccattttaaaaattatt
ttaaaattaaaatataattttgttgcaagtagttacatactttccacagg
acagtggctgtactaccacccactctggctccttttgtccactttgctta
gctgggtgatgccaccaggcccgacctggcttctcttttcttcccacctt
tgctccagcttgggctctggggatcggcgtgcctcagccagaactggctt
tctctctccacc
gaattcagtaacactaagacagctttccaaaaacaaacaaaaccaaaatt
ggacagaaaatttctgatttaatataaaaacacatgcaaaactttttaat
aataattccaaatattagtaatcttaattcactaatcaaaaaaaccacag
actagttgattgggtacaaaaacaggaaccttcctttttttttttttttt
tttgcctccaacaatcacaaaagacagacactgccttacactgaaaggat
gagaaaggtattccaagcaaatggatccaggaaaaaagcaggagttgctg
ttctaatttttgattaaatggacttcaaaaccattgagcaaagataaaga
tggccacttcatattgattaaggtaacaatccatcaggagggcatgacaa
ttatgaacatatggtgcaaacacagacacactcaattttataaagcaaag
ctgttagattatagaactcatagttaagacactttggactttcaaagtgt
tgaaatttttagaaatttggggaacttttgaattggattgtgtgttatat
tatgaaaaaaaaaaacccagcaatgtgggacacttcagctaagtggcaga
aggttatggtttaaaagtgacatgtcaggttaagtagattggtgttgtga
ccattcaagttgttaaatttgtatagtacatagtaacctaggaaaaaccc
cccaaatgaaagactgtgtagattatgttggcctgtgtgcatgtttatgg
gggccttgtctttattacatattactcgatggttgaagacttcaactcgt
gaccagcatcattcctttgtctagagctttgggttgcatagagtaaggaa
agataaggtgagtactaaacacgcatgcacttcagtctcttctgctcctt
gactgcgggtatgctagctgctcaagatcctgccattggtgattatactg
attagaacagactcacctggattgatgctttctaccttaaagattcttat
tacccttttctagaattaaaattaggaactaattatatctccacacatga
ctgcatctcaccaccacacaacatcacctactacaccaagcctggaacat
taagataacatacatgggagacatacttcctcagaagtataggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_54323502_54324626
seq2: B6Ng01-152G01.b_45_1156

seq1  GAATTCACTTCCTTGTGTGCTGATTCTGAAGGCTTGTGACAGAAGCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCCTTGTGTGCTGATTCTGAAGGCTTGTGACAGAAGCAACT  50

seq1  CTTATTTCTCAGTGGCTGAGGTGACTCCAGAGGTAGAATTGTCACTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTCAGTGGCTGAGGTGACTCCAGAGGTAGAATTGTCACTGAGA  100

seq1  AAGAACAACATCCTGAGAGTTATAGCTGACCTGCTAGTCACCACAGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAACATCCTGAGAGTTATAGCTGACCTGCTAGTCACCACAGTCTC  150

seq1  TACTGGATTTTAATTTAATTGGGAAGAGCAATGAAAACATATGCTCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGATTTTAATTTAATTGGGAAGAGCAATGAAAACATATGCTCCTAC  200

seq1  ATTATTCATGTTTCTATGGCTGCAGCTGGATGGTGAGTTAATATCTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCATGTTTCTATGGCTGCAGCTGGATGGTGAGTTAATATCTGAAG  250

seq1  GTCATAGAACAATCAGGGGGCATTTCTGAGACACCCAGGGGGAAACTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGAACAATCAGGGGGCATTTCTGAGACACCCAGGGGGAAACTCTA  300

seq1  TTCAGGTTTATTCTAGTTACTCTAGAAAAAGAGACTCCTGGAAAGGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTTATTCTAGTTACTCTAGAAAAAGAGACTCCTGGAAAGGGGGT  350

seq1  GACCTCACAGACTTTCTCCTTTTATTTCATTCCATATTTCTGCATAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACAGACTTTCTCCTTTTATTTCATTCCATATTTCTGCATAGGGA  400

seq1  TGAGCCAAGGCGAGCAGGTGGAGCAGCTTCCTTCCATCCTGAGAGTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAAGGCGAGCAGGTGGAGCAGCTTCCTTCCATCCTGAGAGTCCAG  450

seq1  GAGGGATCCAGTGCCAGCATCAACTGCAGTTATGAAGACAGTGCCTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATCCAGTGCCAGCATCAACTGCAGTTATGAAGACAGTGCCTCCAA  500

seq1  CTACTTCCCTTGGTATAAGCAAGAACCTGGAGAGAATCCTAAGCTCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCCCTTGGTATAAGCAAGAACCTGGAGAGAATCCTAAGCTCATCA  550

seq1  TTGACATTCGTTCAAATATGGAAAGAAAGCAGATCCAAGAACTCATCGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTCGTTCAAATATGGAAAGAAAGCAGATCCAAGAACTCATCGTT  600

seq1  TTACTGGATAAGAAAGCCAAACGCTTCTCCCTGCACATCACAGACACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGATAAGAAAGCCAAACGCTTCTCCCTGCACATCACAGACACCCA  650

seq1  GCCTGGAGACTCAGCCATGTACTTCTGTGCTGCAAGTGCACACTGCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGACTCAGCCATGTACTTCTGTGCTGCAAGTGCACACTGCTCCA  700

seq1  CGGGCACCTGCAGCCTGTCCTCAAACCTGCCATGGGGCCTGGAGCCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCACCTGCAGCCTGTCCTCAAACCTGCCATGGGGCCTGGAGCCTCAT  750

seq1  CTACATCCTGTGTCACAGGCCTTCCAGGGCAGAATTTGCCAGTTGTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCTGTGTCACAGGCCTTCCAGGGCAGAATTTGCCAGTTGTTAGT  800

seq1  TTGAGGTGACAACTAATATAGACATTAAAAATACAAAATAAGAACGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGACAACTAATATAGACATTAAAAATACAAAATAAGAACGTTAA  850

seq1  TTTCAAGTCACACAAAACAATTTAGGACAATTTCCTCCATTTTAAAAAAT  900
      ||||||||||||| ||||||||| |||| |||||||||||||| ||||||
seq2  TTTCAAGTCACAC-AAACAATTT-GGAC-ATTTCCTCCATTTT-AAAAAT  896

seq1  TATTTTAAAAATTAAAATATAATTTTGTTGCAAGTAGTTAACATACTTTC  950
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  TATTTT-AAAATTAAAATATAATTTTGTTGCAAGTAGTT-ACATACTTTC  944

seq1  CACAGGACAGTGGCTGTACTACCAACCCACTCCTGGCTCCCTTTTGTTCC  1000
      ||||||||||||||||||||||| ||||||| |||||| ||||||| |||
seq2  CACAGGACAGTGGCTGTACTACC-ACCCACT-CTGGCT-CCTTTTG-TCC  990

seq1  ACTTTGCTTAGCTGGGTTGATGCCACCAGCCCCGACCTGGCTTCTCTTTC  1050
      |||||||||||||||| |||||||||||| ||||||||||||||||||| 
seq2  ACTTTGCTTAGCTGGG-TGATGCCACCAGGCCCGACCTGGCTTCTCTTTT  1039

seq1  TTTCCCACCTTTGCTCCAGCTT-GGCTCT-GGGATCGGC-TGCCATCAGC  1097
       ||||||||||||||||||||| |||||| ||||||||| |||| |||| 
seq2  CTTCCCACCTTTGCTCCAGCTTGGGCTCTGGGGATCGGCGTGCC-TCAG-  1087

seq1  CCCAGTACTGCCTTTCTCTCTACCCACC  1125
       |||| |||| ||||||||||  |||||
seq2  -CCAGAACTGGCTTTCTCTCT--CCACC  1112

seq1: chr14_54440165_54441156
seq2: B6Ng01-152G01.g_207_1210 (reverse)

seq1  ACCTATATCTTCTGGAGGAAGTATTGTCTACCCATGTATGTTATCT--AT  48
      ||||||| ||||| ||||||||| ||||| ||||||||||||||||  ||
seq2  ACCTATA-CTTCT-GAGGAAGTA-TGTCT-CCCATGTATGTTATCTTAAT  46

seq1  GTT-CAAGCTGTGTGT-GTGTGTG-TGTGTGTGTGTGTGTGTGTG-TGCG  94
      ||| || |||  |||| ||  ||| ||| |||||| ||| ||| | ||| 
seq2  GTTCCAGGCTTGGTGTAGTAGGTGATGT-TGTGTG-GTG-GTGAGATGCA  93

seq1  TGCATGTGT-GAG-TATAATTAGTTTCATAATTTT-ATTCTAGAAA--GG  139
        ||||||| ||| ||||||||| ||| ||||||| ||||||||||  ||
seq2  GTCATGTGTGGAGATATAATTAG-TTCCTAATTTTAATTCTAGAAAAGGG  142

seq1  TAATAAGAATC-TTAGAGTAGAAAGCATC-ATTCAGGTGAGTCTGTCCT-  186
      ||||||||||| |||  |||||||||||| || ||||||||||||| || 
seq2  TAATAAGAATCTTTAAGGTAGAAAGCATCAATCCAGGTGAGTCTGTTCTA  192

seq1  ATCAGTATAATCA-CAATGGCAGGATCTTGAGCAGCTAGCCATACCCGCA  235
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  ATCAGTATAATCACCAATGGCAGGATCTTGAGCAGCTAG-CATACCCGCA  241

seq1  GTCAA-GAGCAG-AGAGACTG-AGTGCATGCGTGTTTAGTACTCACC-TA  281
      ||||| |||||| |||||||| ||||||||||||||||||||||||| ||
seq2  GTCAAGGAGCAGAAGAGACTGAAGTGCATGCGTGTTTAGTACTCACCTTA  291

seq1  TCTTTCTTTACTCTATGCAACCCAAAGCTCTAGACCAGGGAATGATGCTG  331
      |||||| |||||||||||||||||||||||||||| | ||||||||||||
seq2  TCTTTCCTTACTCTATGCAACCCAAAGCTCTAGACAAAGGAATGATGCTG  341

seq1  GTCACGAGTTG-AGTCTTCAACCATCGAGTAATATGTAATGAAGACAAGG  380
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  GTCACGAGTTGAAGTCTTCAACCATCGAGTAATATGTAATAAAGACAAGG  391

seq1  CCCCCATAAACATGCACACAGGCCAACATAATCTACACAGTCTTTCATTT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATAAACATGCACACAGGCCAACATAATCTACACAGTCTTTCATTT  441

seq1  -GGGGGTTTTTCCTAGGTTACTATGTACTATACAAATTTAACAACTTGAA  479
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTTTTTCCTAGGTTACTATGTACTATACAAATTTAACAACTTGAA  491

seq1  TTGTCACAACACCAATCTACTTAACCTGACATGTCACTTTTAAACCATAA  529
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAACACCAATCTACTTAACCTGACATGTCACTTTTAAACCATAA  541

seq1  CCTTCTGCCACTTAGCTGAAGTGTCCCACATTGCTGGGTTTTTTTTTTTC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCCACTTAGCTGAAGTGTCCCACATTGCTGGGTTTTTTTTTTTC  591

seq1  ATAATATAACACACAATCCAATTCAAAAGTTCCCCAAATTTCTAAAAATT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAACACACAATCCAATTCAAAAGTTCCCCAAATTTCTAAAAATT  641

seq1  TCAACACTTTGAAAGTCCAAAGTGTCTTAACTATGAGTTCTATAATCTAA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTTTGAAAGTCCAAAGTGTCTTAACTATGAGTTCTATAATCTAA  691

seq1  CAGCTTTGCTTTATAAAATTGAGTGTGTCTGTGTTTGCACCATATGTTCA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGCTTTATAAAATTGAGTGTGTCTGTGTTTGCACCATATGTTCA  741

seq1  TAATTGTCATGCCCTCCTGATGGATTGTTACCTTAATCAATATGAAGTGG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCATGCCCTCCTGATGGATTGTTACCTTAATCAATATGAAGTGG  791

seq1  CCATCTTTATCTTTGCTCAATGGTTTTGAAGTCCATTTAATCAAAAATTA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTATCTTTGCTCAATGGTTTTGAAGTCCATTTAATCAAAAATTA  841

seq1  GAACAGCAACTCCTGCTTTTTTCCTGGATCCATTTGCTTGGAATACCTTT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAACTCCTGCTTTTTTCCTGGATCCATTTGCTTGGAATACCTTT  891

seq1  CTCATCCTTTCAGTGTAAGGCAGTGTCTGTCTTTTGTGATTGTTGGAGGC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTTTCAGTGTAAGGCAGTGTCTGTCTTTTGTGATTGTTGGAGGC  941

seq1  AAAAAAAAAAAAAAAAAAAGGAAGGTTCCTGTTTTTGTACCCAATCAACT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAGGAAGGTTCCTGTTTTTGTACCCAATCAACT  991

seq1  AGTCTGTGGTTTT  992
      |||||||||||||
seq2  AGTCTGTGGTTTT  1004