BAC Information

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BAC

Clone NameB6Ng01-152L07
Chromosome14 (Build37)
Map Location 30,783,293 - 30,899,185
singlet/doubletdoublet
Overlap geneSelk, Actr8, Il17rb, Chdh, Cacna1d
Upstream geneCacna2d3, Lrtm1, Ppia-ps15, EG665431
Downstream geneLOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152L07.bB6Ng01-152L07.g
ACCDH948216DH948217
length1,1451,008
definitionDH948216|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L07, 5' end.DH948217|Mus musculus domesticus DNA, BAC clone: B6Ng01-152L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,898,033 - 30,899,185)(30,783,293 - 30,784,305)
sequence
gaattctattgaacatggatcacccagttcctcgaggctattctcgaaat
gacagtcaggtagagagccagtctttgccctgtcccatgtcctcaagggt
cacctgtgggtggcctcagaagctgagcagggtcatgtgacttgcacacc
ttgcccatgctctgctctgtctgtccccagtgcccctctggccctcagaa
aggggacagatgtagagtttaatccctggaagccaatttctgtttcttca
tcaactctagaagcccctgtaacagctgtgacagcccaagtggtctcttt
tactggtttcactctctgtgaccactctgcaggtgtgagctatttgcaga
atacttgacctgacattgatgtggtctagacaggaattctccattctggg
agcacattagaataacttactggctttcaaagttcctgaagtgtaaaagg
acccagattcatttagaaaatcccttttgggtggcccctgggcagtgggt
agctttagagaataccctagggtcagaacaactggtctctgtgcagatgg
agcaaagccatcctagggtgcttcaagtgtggaagatactttggcaactt
gcatggttcccccactgctgccagatacattctcccctctagcaggcctc
tgccctgggaggtgtggtggcgggggcagtgtctcaggccactctggggg
tgcatcctgcagtgcttttggttttcattccttgtgttgtgtggtccact
gcttttgtttcctgaaaaatgctatctcctctcctcctccttaaaaaaaa
aaagacaatttgactaggtgttgtggtcgatacctataatcccagtaagt
aggaggtagaggtagctacataatgaattttgaggccagcctgggctaca
taagaccttgtctcaataaaaagtttagatttaatgattgatgatgtcat
tcttcagataatagttaaaaattgcaaatttcaaagtcagtttagctaac
tttcatcagcacaaaggaagaggatcacaaatggcctgtcatggagcagc
aagaggatgggagccgaagaagatgggcagaaagagaggcgtactaagtg
ctctccggtccacatagttcaaggtatttggtacatagccgtaga
tggttttcttgtaagtataaaagcatttctttaattgagaccaagtgttg
ctatttagtctcatagctggtttagtgttatagagagtctaagctgttct
ggaagtcattgtagtcaccccgccttagcctcctaagtgttgaaattaca
agaatgtgccaccactcctggttctgaacttttaatgaagggttagttga
taatggggaaaaaaaaatgtcgacttctcaggcattttaagcagttctgt
attagatgaggtctcaggcattttaagtagttgtgtattagatgaggggt
ggtgtctgaccattacgtgctgtgctacctaaactgccagccagttacta
ccaggtcttacttaccctgaattgagtaaatatttgaatgtctcctgttt
ggaaagtcatgagtagatagagaaggatacgtccccctttcattgagtat
tgggctggcaagttttatgtcaacttgacacaagttagaattactgaaaa
taggaacctcaattgagaaaatgcctccataagatcaggctagaggcaag
cccgtaggacatttttacttagtgattgatgtgggagggcccagcccatt
gttgatggggacacccctgggttctgtaagaaaacatgctgtggggagaa
aggcaggaagcagcaccccttcagcatcagctcctgcctccaggttcctg
ccctagttgagttctttctccttacttccttcagtgatggactatgactg
tggaactgtgagtcaagtaaacccctttcctctccagcttgctttgggtc
ctggtgtttcgtcacagcactagtaaccctaactaagtatattagttctg
tcagttttcatagtcagtgtaatttagtatattcagtaataatatcagcc
ttcataatggcaggatagttgatgagtgccatgtggaaagtgcacttgag
gaagtacccaaggaggactaggccctgactcaaagttaccagtgcaaaat
aatacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30898033_30899185
seq2: B6Ng01-152L07.b_46_1190 (reverse)

seq1  TCTACAGCTATGGTACCAAAATACCTGCAACATATGTGGGACCTGTAAGA  50
      ||||| ||||| ||||| ||||||||  ||| ||||| ||||| |  |||
seq2  TCTACGGCTAT-GTACC-AAATACCTTGAAC-TATGT-GGACCGG--AGA  44

seq1  GCAC-TAGTACGCCTGCTCTTTCTGGCCACTCTCTTCGGCT-CCATCCTC  98
      |||| |||||||||| ||||||||| |||   ||||||||| ||||||||
seq2  GCACTTAGTACGCCT-CTCTTTCTGCCCATCTTCTTCGGCTCCCATCCTC  93

seq1  TGTGCTGCTCCATGACAGGCCATTTGTGATCCTCTTCCTTTGTGCTGATG  148
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-TGCTGCTCCATGACAGGCCATTTGTGATCCTCTTCCTTTGTGCTGATG  142

seq1  AAAGTTAGCTAAACTGACTTTTGAAATGTGCAATTTTTAAACTATTATCT  198
      |||||||||||||||||| |||||||| |||||||||| |||||||||||
seq2  AAAGTTAGCTAAACTGAC-TTTGAAATTTGCAATTTTT-AACTATTATCT  190

seq1  GAAGAATGACAATCATCAATCATTAAATCTAAACTTTTTTTTTGAGACAA  248
      |||||||||| ||||||||||||||||||||||| ||||| |||||||||
seq2  GAAGAATGAC-ATCATCAATCATTAAATCTAAAC-TTTTTATTGAGACAA  238

seq1  GGTCTTATGTAGCCCAGGCTGGCCTC-AAATTCATTATGTAGCTACCTCT  297
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGTCTTATGTAGCCCAGGCTGGCCTCAAAATTCATTATGTAGCTACCTCT  288

seq1  ACCTCCTACTTACTGGGATTATAGGTATCGACCACAACACCTAGTCAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTACTTACTGGGATTATAGGTATCGACCACAACACCTAGTCAAAT  338

seq1  TGTCTTTTTTTTTTTAAGGAGGAGGAGAGGAGATAGCATTTTTCAGGAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTTTTTTTAAGGAGGAGGAGAGGAGATAGCATTTTTCAGGAAA  388

seq1  CAAAAGCAGTGGACCACACAACACAAGGAATGAAAACC-AAAGCACTGCA  446
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAAAGCAGTGGACCACACAACACAAGGAATGAAAACCAAAAGCACTGCA  438

seq1  GGATGCACCCCCAGAGTGGCCTGAGACACTGCCCCCGCCACCACACCTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCACCCCCAGAGTGGCCTGAGACACTGCCCCCGCCACCACACCTCC  488

seq1  CAGGGCAGAGGCCTGCTAGAGGGGAGAATGTATCTGGCAGCAGTGGGGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGAGGCCTGCTAGAGGGGAGAATGTATCTGGCAGCAGTGGGGGA  538

seq1  ACCATGCAAGTTGCCAAAGTATCTTCCACACTTGAAGCACCCTAGGATGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAAGTTGCCAAAGTATCTTCCACACTTGAAGCACCCTAGGATGG  588

seq1  CTTTGCTCCATCTGCACAGAGACCAGTTGTTCTGACCCTAGGGTATTCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCCATCTGCACAGAGACCAGTTGTTCTGACCCTAGGGTATTCTC  638

seq1  TAAAGCTACCCACTGCCCAGGGGCCACCCAAAAGGGATTTTCTAAATGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTACCCACTGCCCAGGGGCCACCCAAAAGGGATTTTCTAAATGAA  688

seq1  TCTGGGTCCTTTTACACTTCAGGAACTTTGAAAGCCAGTAAGTTATTCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCTTTTACACTTCAGGAACTTTGAAAGCCAGTAAGTTATTCTA  738

seq1  ATGTGCTCCCAGAATGGAGAATTCCTGTCTAGACCACATCAATGTCAGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTCCCAGAATGGAGAATTCCTGTCTAGACCACATCAATGTCAGGT  788

seq1  CAAGTATTCTGCAAATAGCTCACACCTGCAGAGTGGTCACAGAGAGTGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTCTGCAAATAGCTCACACCTGCAGAGTGGTCACAGAGAGTGAA  838

seq1  ACCAGTAAAAGAGACCACTTGGGCTGTCACAGCTGTTACAGGGGCTTCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAAAAGAGACCACTTGGGCTGTCACAGCTGTTACAGGGGCTTCTA  888

seq1  GAGTTGATGAAGAAACAGAAATTGGCTTCCAGGGATTAAACTCTACATCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGATGAAGAAACAGAAATTGGCTTCCAGGGATTAAACTCTACATCT  938

seq1  GTCCCCTTTCTGAGGGCCAGAGGGGCACTGGGGACAGACAGAGCAGAGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTTTCTGAGGGCCAGAGGGGCACTGGGGACAGACAGAGCAGAGCA  988

seq1  TGGGCAAGGTGTGCAAGTCACATGACCCTGCTCAGCTTCTGAGGCCACCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAGGTGTGCAAGTCACATGACCCTGCTCAGCTTCTGAGGCCACCC  1038

seq1  ACAGGTGACCCTTGAGGACATGGGACAGGGCAAAGACTGGCTCTCTACCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGACCCTTGAGGACATGGGACAGGGCAAAGACTGGCTCTCTACCT  1088

seq1  GACTGTCATTTCGAGAATAGCCTCGAGGAACTGGGTGATCCATGTTCAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCATTTCGAGAATAGCCTCGAGGAACTGGGTGATCCATGTTCAAT  1138

seq1  AGAATTC  1153
      |||||||
seq2  AGAATTC  1145

seq1: chr14_30783293_30784305
seq2: B6Ng01-152L07.g_75_1082

seq1  TGGTTTTCTTGTAAGTATAAAAGCATTTCTTTAATTGAGACCAAGTGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCTTGTAAGTATAAAAGCATTTCTTTAATTGAGACCAAGTGTTG  50

seq1  CTATTTAGTCTCATAGCTGGTTTAGTGTTATAGAGAGTCTAAGCTGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAGTCTCATAGCTGGTTTAGTGTTATAGAGAGTCTAAGCTGTTCT  100

seq1  GGAAGTCATTGTAGTCACCCCGCCTTAGCCTCCTAAGTGTTGAAATTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCATTGTAGTCACCCCGCCTTAGCCTCCTAAGTGTTGAAATTACA  150

seq1  AGAATGTGCCACCACTCCTGGTTCTGAACTTTTAATGAAGGGTTAGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGCCACCACTCCTGGTTCTGAACTTTTAATGAAGGGTTAGTTGA  200

seq1  TAATGGGGAAAAAAAAATGTCGACTTCTCAGGCATTTTAAGCAGTTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGGAAAAAAAAATGTCGACTTCTCAGGCATTTTAAGCAGTTCTGT  250

seq1  ATTAGATGAGGTCTCAGGCATTTTAAGTAGTTGTGTATTAGATGAGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATGAGGTCTCAGGCATTTTAAGTAGTTGTGTATTAGATGAGGGGT  300

seq1  GGTGTCTGACCATTACGTGCTGTGCTACCTAAACTGCCAGCCAGTTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGACCATTACGTGCTGTGCTACCTAAACTGCCAGCCAGTTACTA  350

seq1  CCAGGTCTTACTTACCCTGAATTGAGTAAATATTTGAATGTCTCCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCTTACTTACCCTGAATTGAGTAAATATTTGAATGTCTCCTGTTT  400

seq1  GGAAAGTCATGAGTAGATAGAGAAGGATACGTCCCCCTTTCATTGAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCATGAGTAGATAGAGAAGGATACGTCCCCCTTTCATTGAGTAT  450

seq1  TGGGCTGGCAAGTTTTATGTCAACTTGACACAAGTTAGAATTACTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGCAAGTTTTATGTCAACTTGACACAAGTTAGAATTACTGAAAA  500

seq1  TAGGAACCTCAATTGAGAAAATGCCTCCATAAGATCAGGCTAGAGGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACCTCAATTGAGAAAATGCCTCCATAAGATCAGGCTAGAGGCAAG  550

seq1  CCCGTAGGACATTTTTACTTAGTGATTGATGTGGGAGGGCCCAGCCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAGGACATTTTTACTTAGTGATTGATGTGGGAGGGCCCAGCCCATT  600

seq1  GTTGATGGGGACACCCCTGGGTTCTGTAAGAAAACATGCTGTGGGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGGGGACACCCCTGGGTTCTGTAAGAAAACATGCTGTGGGGAGAA  650

seq1  AGGCAGGAAGCAGCACCCCTTCAGCATCAGCTCCTGCCTCCAGGTTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAAGCAGCACCCCTTCAGCATCAGCTCCTGCCTCCAGGTTCCTG  700

seq1  CCCTAGTTGAGTTC-TTCTCCTTACTTCCTTCAGTGATGGACTATGACTG  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCTAGTTGAGTTCTTTCTCCTTACTTCCTTCAGTGATGGACTATGACTG  750

seq1  TGGAACTGTGAGTCAAGTAAACCCCTTTCCTCTCCAGCTTGCTTTGGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGTGAGTCAAGTAAACCCCTTTCCTCTCCAGCTTGCTTTGGGTC  800

seq1  CTGGTGTTTCGTCACAGCACTAGTAACCCTAACTAAGTATATTAGTACTG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGGTGTTTCGTCACAGCACTAGTAACCCTAACTAAGTATATTAGTTCTG  850

seq1  TCAGTTTTCATAGTCAGTGTAATTTAGTATATTCAGT-ATAATATCAGCC  898
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCAGTTTTCATAGTCAGTGTAATTTAGTATATTCAGTAATAATATCAGCC  900

seq1  TTCATATTGCAGGGATAGTGGATGAGTGCCATTGTGGAAAGTGCACTTGA  948
      |||||| ||   ||||||| ||||||||||| ||||||||||||||||||
seq2  TTCATAATGGCAGGATAGTTGATGAGTGCCA-TGTGGAAAGTGCACTTGA  949

seq1  GGAAGTTACCCAAGGAGGGACAAGGCCCTGACTTCAAAGTTACCAGTGCA  998
      ||||| |||||||||| |||| |||||||||| |||||||||||||||||
seq2  GGAAG-TACCCAAGGA-GGACTAGGCCCTGAC-TCAAAGTTACCAGTGCA  996

seq1  AAATTTAATTACTTT  1013
      ||||   | ||||||
seq2  AAAT---AATACTTT  1008