BAC Information

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BAC

Clone NameB6Ng01-153B21
Chromosome14 (Build37)
Map Location 35,065,468 - 35,218,879
singlet/doubletdoublet
Overlap gene3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2
Upstream geneArhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15
Downstream geneBmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153B21.bB6Ng01-153B21.g
ACCDH948518DH948519
length1,146500
definitionDH948518|Mus musculus domesticus DNA, BAC clone: B6Ng01-153B21, 5' end.DH948519|Mus musculus domesticus DNA, BAC clone: B6Ng01-153B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,217,728 - 35,218,879)(35,065,468 - 35,065,973)
sequence
gaattcttagtaatctgggcctggggagatggctctgttaattgcctgcc
atgctagcctgaggacctaaaattggctccccagtacctatgtaaaaagc
tgggtgcagtgtatgactgtaatcccagcactggggatggggacatagaa
gtaagtctcaggagcccattggccaggcagtctagtgacaccagtgaact
ccagatccagtgagagaccctgcttcagaaaataagatggcaagtgactg
agcaagatgcccagtgccaacttctagcttccatgcacccacacacatgc
acatacccaaagaaacacacacagcacagccacctatgcacacacacata
caatgtttactgaactgtctgtaaaaaaacatgtggcttgaactcgatgt
tgaggctttgtaaaatgtagtcaggcgtgctttatcacatcaaaagcatc
cctgctaaaaaccatttcacctcactccagatacatccagagtgcaccat
acagtggtggtggaacacctgacccactagtgcttcttgcctaacccttc
ctgtgagggttggcgacataccttttcgtgatggaactgatttacactgt
attctatgccagaaattctgaatggaagtctttaacaacgatgagactac
attaccctagcattgccaacttactcctcagaagggactggccagtgaca
gcaacatggagaacaagaagacagccaggtctgccagcaacaggggtggc
ctaccacacacaggtcaccccgggctttggtatgcccaaccacacatacc
ctggtccagaaatagtctcgacaacaagagctctactgaaatgaacaaga
ttcagagagatggtcaatatcagagtgctggatgagagccgttaaccatt
tcactacagatggagtggagcttggcagaattgtggctgaactcatggtc
acccatcagtgacagagccttctgacttactgctcatctaacaccatact
tccacacactgaacagagctttataagtaaattctgaggttattacttga
attaggaccctaggagccatgagattgctagcaacccattactcagtcaa
atcagcaccaacactgaggcacttaccaaagctgctttatatacct
cacacaggtaccccacccccactaaataaataaataaataaataaataaa
taaataaataaatgtttaagagaatggattggtgaaatttgctgatcaaa
ttcaaatttttctgaaggataggaagatatgttcatatatatgacagact
tatggccaaatttggttgttcttcccctcattaacatgatcatctgcatc
cactccatctgctacaccaacacctaagtatttactcactcatcagagga
tcgtctgctacatgacaggcactataccaggtgctaatgagacagagaaa
aactacatcaccacaatctcaacacagaaagagttaatgattgacctaga
gacagccggcaacaaacactcagcgtggaatgtaaactgaggacagagtt
gactctcggtaaattgtttacctaccacttgggtggtactgggctttatc
cctagaaccataaatggtcaggagggatagaagtggcggggggggggggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_35217728_35218879
seq2: B6Ng01-153B21.b_43_1188 (reverse)

seq1  AGGTA-ATAAAGCAGGCTTTGGT-AGTG-CTCAGTGTTGGTTGGCTGATT  47
      ||||| |||||||| |||||||| |||| ||||||||||||  |||||||
seq2  AGGTATATAAAGCA-GCTTTGGTAAGTGCCTCAGTGTTGGT--GCTGATT  47

seq1  TGACTGGGTAATGGGTTGCTAGCAATTCTCATTGCTTCCTAGGGTCCTTA  97
      |||||| |||||||||||||||||| |||||| || ||||||||||| ||
seq2  TGACTGAGTAATGGGTTGCTAGCAA-TCTCATGGC-TCCTAGGGTCC-TA  94

seq1  ATTCAAGTAATTAACCTTCAGAATTTACTTATAAAGCTCTGTTCAGTGTG  147
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  ATTCAAGTAA-TAACC-TCAGAATTTACTTATAAAGCTCTGTTCAGTGTG  142

seq1  TGGAGGTATTGGTGTTAGATGAGCAGTAAGTCAGAAGGCTCTGTCACTGA  197
      |||| ||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTA-TGGTGTTAGATGAGCAGTAAGTCAGAAGGCTCTGTCACTGA  191

seq1  TGGGTGACCATGAGTTCAGCCACAATTCTGCCAAGCTCCACTCCATCTGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGACCATGAGTTCAGCCACAATTCTGCCAAGCTCCACTCCATCTGT  241

seq1  AGTGAAATGGTTAACGGCTCTCATCCAGCACTCTGATATTGACCATCTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATGGTTAACGGCTCTCATCCAGCACTCTGATATTGACCATCTCT  291

seq1  CTGAATCTTGTTCATTTCAGTAGAGCTCTTGTTGTCGAGACTATTTCTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTTGTTCATTTCAGTAGAGCTCTTGTTGTCGAGACTATTTCTGG  341

seq1  ACCAGGGTATGTGTGGTTGGGCATACCAAAGCCCGGGGTGACCTGTGTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGTATGTGTGGTTGGGCATACCAAAGCCCGGGGTGACCTGTGTGT  391

seq1  GGTAGGCCACCCCTGTTGCTGGCAGACCTGGCTGTCTTCTTGTTCTCCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCCACCCCTGTTGCTGGCAGACCTGGCTGTCTTCTTGTTCTCCAT  441

seq1  GTTGCTGTCACTGGCCAGTCCCTTCTGAGGAGTAAGTTGGCAATGCTAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTCACTGGCCAGTCCCTTCTGAGGAGTAAGTTGGCAATGCTAGG  491

seq1  GTAATGTAGTCTCATCGTTGTTAAAGACTTCCATTCAGAATTTCTGGCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTAGTCTCATCGTTGTTAAAGACTTCCATTCAGAATTTCTGGCAT  541

seq1  AGAATACAGTGTAAATCAGTTCCATCACGAAAAGGTATGTCGCCAACCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAGTGTAAATCAGTTCCATCACGAAAAGGTATGTCGCCAACCCT  591

seq1  CACAGGAAGGGTTAGGCAAGAAGCACTAGTGGGTCAGGTGTTCCACCACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAGGGTTAGGCAAGAAGCACTAGTGGGTCAGGTGTTCCACCACC  641

seq1  ACTGTATGGTGCACTCTGGATGTATCTGGAGTGAGGTGAAATGGTTTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGGTGCACTCTGGATGTATCTGGAGTGAGGTGAAATGGTTTTTA  691

seq1  GCAGGGATGCTTTTGATGTGATAAAGCACGCCTGACTACATTTTACAAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGATGCTTTTGATGTGATAAAGCACGCCTGACTACATTTTACAAAG  741

seq1  CCTCAACATCGAGTTCAAGCCACATGTTTTTTTACAGACAGTTCAGTAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACATCGAGTTCAAGCCACATGTTTTTTTACAGACAGTTCAGTAAA  791

seq1  CATTGTATGTGTGTGTGCATAGGTGGCTGTGCTGTGTGTGTTTCTTTGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATGTGTGTGTGCATAGGTGGCTGTGCTGTGTGTGTTTCTTTGGG  841

seq1  TATGTGCATGTGTGTGGGTGCATGGAAGCTAGAAGTTGGCACTGGGCATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCATGTGTGTGGGTGCATGGAAGCTAGAAGTTGGCACTGGGCATC  891

seq1  TTGCTCAGTCACTTGCCATCTTATTTTCTGAAGCAGGGTCTCTCACTGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGTCACTTGCCATCTTATTTTCTGAAGCAGGGTCTCTCACTGGA  941

seq1  TCTGGAGTTCACTGGTGTCACTAGACTGCCTGGCCAATGGGCTCCTGAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTTCACTGGTGTCACTAGACTGCCTGGCCAATGGGCTCCTGAGA  991

seq1  CTTACTTCTATGTCCCCATCCCCAGTGCTGGGATTACAGTCATACACTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCTATGTCCCCATCCCCAGTGCTGGGATTACAGTCATACACTGC  1041

seq1  ACCCAGCTTTTTACATAGGTACTGGGGAGCCAATTTTAGGTCCTCAGGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTTTTTACATAGGTACTGGGGAGCCAATTTTAGGTCCTCAGGCT  1091

seq1  AGCATGGCAGGCAATTAACAGAGCCATCTCCCCAGGCCCAGATTACTAAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCAGGCAATTAACAGAGCCATCTCCCCAGGCCCAGATTACTAAG  1141

seq1  AATTC  1152
      |||||
seq2  AATTC  1146

seq1: chr14_35065468_35065973
seq2: B6Ng01-153B21.g_68_573

seq1  GAATTCCACACAGGTACCCCACCCCCACTAAATAAATAAATAAATAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACAGGTACCCCACCCCCACTAAATAAATAAATAAATAAATA  50

seq1  AATAAATAAATAAATAAATGTTTAAGAGAATGGATTGGTGAAATTTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAATGTTTAAGAGAATGGATTGGTGAAATTTGCTG  100

seq1  ATCAAATTCAAATTTTTCTGAAGGATAGGAAGATATGTTCATATATATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTCAAATTTTTCTGAAGGATAGGAAGATATGTTCATATATATGA  150

seq1  CAGACTTATGGCCAAATTTGGTTGTTCTTCCCCTCATTAACATGATCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTATGGCCAAATTTGGTTGTTCTTCCCCTCATTAACATGATCATC  200

seq1  TGCATCCACTCCATCTGCTACACCAACACCTAAGTATTTACTCACTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCACTCCATCTGCTACACCAACACCTAAGTATTTACTCACTCATC  250

seq1  AGAGGATCGTCTGCTACATGACAGGCACTATACCAGGTGCTAATGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATCGTCTGCTACATGACAGGCACTATACCAGGTGCTAATGAGACA  300

seq1  GAGAAAAACTACATCACCACAATCTCAACACAGAAAGAGTTAATGATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACTACATCACCACAATCTCAACACAGAAAGAGTTAATGATTGA  350

seq1  CCTAGAGACAGCCGGCAACAAACACTCAGCGTGGAATGTAAACTGAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGACAGCCGGCAACAAACACTCAGCGTGGAATGTAAACTGAGGAC  400

seq1  AGAGTTGACTCTCGGTAAATTGTTTACCTACCACTTGGGTGGTACTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGACTCTCGGTAAATTGTTTACCTACCACTTGGGTGGTACTGGGC  450

seq1  TTTATCCCTAGAACCATAAATGGTCAGGAGGGATAGAAGTGGCGGGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCCTAGAACCATAAATGGTCAGGAGGGATAGAAGTGGCGGGGGGG  500

seq1  GGGGGG  506
      ||||||
seq2  GGGGGG  506