BAC Information

Click to search

BAC

Clone NameB6Ng01-153D18
Chromosome14 (Build37)
Map Location 118,489,762 - 118,578,676
singlet/doubletdoublet
Overlap geneTgds, Gpr180
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct
Downstream geneLOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153D18.bB6Ng01-153D18.g
ACCDH948606DH948607
length3521,064
definitionDH948606|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D18, 5' end.DH948607|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,489,762 - 118,490,113)(118,577,608 - 118,578,676)
sequence
tcctcaaaacactgcagcaaagacttgatgattttcgttaactttttagg
caaccagctattgttcttgtctgtggctgcctgcctgcctgcctggtctg
tagagtgctgcgaatcaatctcaggctcttccggtctttccacctcagtc
tttccacctcttcctcgagacttccagaggcgagaagtctgaatgagaaa
tgtcccctatagtcttgaccatttgaacaccagcttgggggggggggggg
attagaacgtgcagccttttggaggacgtatgtctgtcactcggggtcct
tagaaagtcacctgtgcactttatgtcctcagcttccctggctaaaaatt
ta
gaattcagtcgtgtgtaagttagacagaatcttgaatgccttccagccac
acctaccttctgttttaatcacatatgtatgatcatttaaaacaaacatt
tcatctcaggccatttaaattttatctccatgaatggtagattagtaata
accttgggttcactcacaattctgtacaccctttaggctctatatatctg
agcacagagccaaggaggcaacgccgtccacaacccctacagcagtcctg
ggagttagtgacattagagcccatctctcaggtctcactggattctgtga
gacacacacacaccgttgctagagagatcacagagggaacggtcaagaga
aactaggtctgccttgcaaccaaggccatgctccttctagcgtatctcaa
cgcctttgattatgaaggatctcagctcgttgactgctagccagccgtat
gctggagcagtctgtggcaacgaatctaaaatattaagtgatacaggagg
caaaaccttaaagatatagctttgaaaagattttattcctatgtatctgt
gtgaatgtatgctacatgtatgcgtaagcgaccagaggctagttgagggt
gtcagatctcctggggttggagttagagtagttgttagctgctcagcata
ggcgttgagggttgaacttggggcgtttgaaagagcaggaactcctagct
acagagccgcctcttagcacttcactgacttaaaaaacactgttgagaaa
aacacacccagttttttcaaaagacttcctccaggaagacacgaattgga
atagtttcattttcccattgtcatatttacccagagtagttcttgttagg
gcaagcctgcccctttgagatggtggtcactctgagacgtgagtttctaa
ggccagccagggctacatagtaagatcctgtctcaaaacaaaaacaaact
tcctcaaaaaaaaaaaaaaagctttgaattgtggtttctgctaaatcatg
tgtttccaataacagacactctgattttaaatttttgctgtttgtttttg
tttttcgagacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118489762_118490113
seq2: B6Ng01-153D18.b_52_403

seq1  TCCTCAAAACACTGCAGCAAAGACTTGATGATTTTCGTTAACTTTTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAACACTGCAGCAAAGACTTGATGATTTTCGTTAACTTTTTAGG  50

seq1  CAACCAGCTATTGTTCTTGTCTGTGGCTGCCTGCCTGCCTGCCTGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGCTATTGTTCTTGTCTGTGGCTGCCTGCCTGCCTGCCTGGTCTG  100

seq1  TAGAGTGCTGCGAATCAATCTCAGGCTCTTCCGGTCTTTCCACCTCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGCTGCGAATCAATCTCAGGCTCTTCCGGTCTTTCCACCTCAGTC  150

seq1  TTTCCACCTCTTCCTCGAGACTTCCAGAGGCGAGAAGTCTGAATGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCTCTTCCTCGAGACTTCCAGAGGCGAGAAGTCTGAATGAGAAA  200

seq1  TGTCCCCTATAGTCTTGACCATTTGAACACCAGCTTGGGGGGGGGGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCTATAGTCTTGACCATTTGAACACCAGCTTGGGGGGGGGGGGGG  250

seq1  ATTAGAACGTGCAGCCTTTTGGAGGACGTATGTCTGTCACTCGGGGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAACGTGCAGCCTTTTGGAGGACGTATGTCTGTCACTCGGGGTCCT  300

seq1  TAGAAAGTCACCTGTGCACTTTAGGTCCTCAGCTTCCCTGGCTAAAAATT  350
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAGAAAGTCACCTGTGCACTTTATGTCCTCAGCTTCCCTGGCTAAAAATT  350

seq1  TA  352
      ||
seq2  TA  352

seq1: chr14_118577608_118578676
seq2: B6Ng01-153D18.g_68_1131 (reverse)

seq1  CCTGTCTCGAAAAACAAAAAACAAACAAGCAAAAATTTAAAATCAGAAGT  50
      ||||||||||||||| |||||||||| ||||||||||||||||||| |||
seq2  CCTGTCTCGAAAAAC-AAAAACAAAC-AGCAAAAATTTAAAATCAG-AGT  47

seq1  GTTCTGTTA-TGGGAACACATGATTTAGCAGAAACAACATTTCAAAGCTT  99
      | ||||||| ||| ||||||||||||||||||||| ||| ||||||||||
seq2  G-TCTGTTATTGGAAACACATGATTTAGCAGAAACCACAATTCAAAGCTT  96

seq1  TTTTTTTTTTTTTGAGGAAGTTTGTTTTTGTTTTTGAGACAGGATCTTAC  149
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTTTTTTTTTTGAGGAAGTTTGTTTTTG-TTTTGAGACAGGATCTTAC  145

seq1  TATGTAGCCCTGGCTGGCC-TAGAAACTCACGTCTCAGAGTGACCACCAT  198
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATGTAGCCCTGGCTGGCCTTAGAAACTCACGTCTCAGAGTGACCACCAT  195

seq1  CTCAAAGGGGCAGGC-TGGCCTAACAAGAACTACTCTGGGGTAAATAATG  247
      ||||||||||||||| || |||||||||||||||||| |||||||| |||
seq2  CTCAAAGGGGCAGGCTTGCCCTAACAAGAACTACTCT-GGGTAAAT-ATG  243

seq1  ACAATTGGAAAATGAAACTATTCCAATTCGTGTCTTCCTGGAGGAAGTCT  297
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGGAAAATGAAACTATTCCAATTCGTGTCTTCCTGGAGGAAGTCT  293

seq1  TTTGAAAAAACTGGGTGTGTTTTTCTCAACAGTGTTTTTTAAGTCAGTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGAAAAAACTGGGTGTGTTTTTCTCAACAGTGTTTTTTAAGTCAG-TG  342

seq1  AAGTGCTAAGAGGCGGCTCTGTAGCTAGGAGTTCCTGCTCTTTCAAACGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTAAGAGGCGGCTCTGTAGCTAGGAGTTCCTGCTCTTTCAAACGC  392

seq1  CCCAAGTTCAACCCTCAACGCCTATGCTGAGCAGCTAACAACTACTCTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTCAACCCTCAACGCCTATGCTGAGCAGCTAACAACTACTCTAA  442

seq1  CTCCAACCCCAGGAGATCTGACACCCTCAACTAGCCTCTGGTCGCTTACG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCCCAGGAGATCTGACACCCTCAACTAGCCTCTGGTCGCTTACG  492

seq1  CATACATGTAGCATACATTCACACAGATACATAGGAATAAAATCTTTTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTAGCATACATTCACACAGATACATAGGAATAAAATCTTTTCA  542

seq1  AAGCTATATCTTTAAGGTTTTGCCTCCTGTATCACTTAATATTTTAGATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATATCTTTAAGGTTTTGCCTCCTGTATCACTTAATATTTTAGATT  592

seq1  CGTTGCCACAGACTGCTCCAGCATACGGCTGGCTAGCAGTCAACGAGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCCACAGACTGCTCCAGCATACGGCTGGCTAGCAGTCAACGAGCTG  642

seq1  AGATCCTTCATAATCAAAGGCGTTGAGATACGCTAGAAGGAGCATGGCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTTCATAATCAAAGGCGTTGAGATACGCTAGAAGGAGCATGGCCT  692

seq1  TGGTTGCAAGGCAGACCTAGTTTCTCTTGACCGTTCCCTCTGTGATCTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCAAGGCAGACCTAGTTTCTCTTGACCGTTCCCTCTGTGATCTCT  742

seq1  CTAGCAACGGTGTGTGTGTGTCTCACAGAATCCAGTGAGACCTGAGAGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAACGGTGTGTGTGTGTCTCACAGAATCCAGTGAGACCTGAGAGAT  792

seq1  GGGCTCTAATGTCACTAACTCCCAGGACTGCTGTAGGGGTTGTGGACGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTAATGTCACTAACTCCCAGGACTGCTGTAGGGGTTGTGGACGGC  842

seq1  GTTGCCTCCTTGGCTCTGTGCTCAGATATATAGAGCCTAAAGGGTGTACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTCCTTGGCTCTGTGCTCAGATATATAGAGCCTAAAGGGTGTACA  892

seq1  GAATTGTGAGTGAACCCAAGGTTATTACTAATCTACCATTCATGGAGATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTGAGTGAACCCAAGGTTATTACTAATCTACCATTCATGGAGATA  942

seq1  AAATTTAAATGGCCTGAGATGAAATGTTTGTTTTAAATGATCATACATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAATGGCCTGAGATGAAATGTTTGTTTTAAATGATCATACATAT  992

seq1  GTGATTAAAACAGAAGGTAGGTGTGGCTGGAAGGCATTCAAGATTCTGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAAAACAGAAGGTAGGTGTGGCTGGAAGGCATTCAAGATTCTGTC  1042

seq1  TAACTTACACACGACTGAATTC  1069
      ||||||||||||||||||||||
seq2  TAACTTACACACGACTGAATTC  1064