BAC Information

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BAC

Clone NameB6Ng01-153F24
Chromosome14 (Build37)7 (Build37)
Map Location 18,164,444 - 18,165,57491,774,557 - 91,775,023
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTop2b, Rarb, Tpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153F24.bB6Ng01-153F24.g
ACCDH948706DH948707
length1,131849
definitionDH948706|Mus musculus domesticus DNA, BAC clone: B6Ng01-153F24, 5' end.DH948707|Mus musculus domesticus DNA, BAC clone: B6Ng01-153F24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,164,444 - 18,165,574)(91,774,557 - 91,775,023)
sequence
gaattcagtaaccttgatttcataaatcaattatacctttttcaccatat
atattatttataatataaaatgtttactcccagaaccaaagaatgaatcc
aaatccaaaatattttggagatattcagttgccttcttagtctcaaaagg
acatacaatgacaaccagagagctcagtaagactaagaagtcttatggat
attgtcttagttggtttataccaagtggctagtcaagatggtggggaggt
tatatggcatgtgctctcgtttagccttagtaaagatggctgccagccac
atatttgtttctatcctgatgaagtcatcaattaatatggaggcaaacta
catggttgctatttaaaaatatctatttttctaaacaacaatgtaatcta
agttgcatgtattttagatagttctgagcagggtccatgcggaacataga
atgtagtcttccaatgggtaactattttaggtggttctgagcagtaaatg
ggtttctcactaagaacagctatttgaacattcagcaaagtactcaagag
tttggtgtggtcagatagcttttttagatgattgatatatgtcacttgcc
cagtaaccaggagccacaggttaaactgatcagaagtaagacttggattc
ttgacttgaacctgaatcttcttctgcagtgtcaaaactagaaaagtatt
ggctgagtctgggtccttgcctgaaattcaaacatgcttgagaattaaat
aaatccttttgttttaaccacccattcattatctttctttatttttctct
tattacattgtaggcctcatgtagcaaatactaaccttcagtgttatgta
gcagaagatggccttgaacttctgatcctctaatccatctcctacgtatg
ctcaaaagaggaagtgttctccgttaactgctcatccactcatcaaatat
ataatacctaacacatctgcacaccaagcaaatcatgagaagaagaagac
agtggacagccattaccaccttacagtgtaactagaaggggtatgcacca
gatgtactgcatcacgggagcctggagtaaccccggagctaagagatata
acaaactttgataggaaattccacctaagag
gaattcatcttgaaaggttttaagtttgatgagtatgaagtgcccctcct
tgtctcttatgataactttgggttggaagttgattttatttgatattaga
atggctactccagcttgtttctttggaccatttgcttgcaaaattgtttt
cctgtcttttactctgaggtagtgcctctctttgttcctgaggtatgttt
cctgtatgcagcaaaattttgggtcctgtttatgtagccagtctgtcttt
ttattgggaaatcatgatcattgatattaagagatattaaggaaaagtaa
ttgttgcttcttgttatttttgtttttagagttaggattctgttctttca
gctatcttcttttaggtttgttgaagaagtactttcttgttttttcttgg
gcataattttcttccttgtgttggagttttccctttattatcctctgaag
ggctggattggtggaaagatattgtgtgaatctggttttgtcatggattt
ctccatctatggtaattgactgttttgctgggtatagtagcctgggctgg
catttgtgttctcatagcatctgtccaggatcttcggactttcatagtct
ctggtgagaaatctggtgtaattatgataggtctgcctttatatgttact
tgacttttttcccttactgcttttaatgttctatcctttaattagtgcat
ttcttgttctgattattatgtgttggggaggaatttccttttggaaattc
tccagtctatttgggagctctgtagcttcttgtatgttcatgggcatttc
tttctttaggttagagaaattttcttctataattttgataaagatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_18164444_18165574
seq2: B6Ng01-153F24.b_43_1173

seq1  GAATTCAGTAACCTTGATTTCATAAATCAATTATACCTTTTTCACCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAACCTTGATTTCATAAATCAATTATACCTTTTTCACCATAT  50

seq1  ATATTATTTATAATATAAAATGTTTACTCCCAGAACCAAAGAATGAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTTATAATATAAAATGTTTACTCCCAGAACCAAAGAATGAATCC  100

seq1  AAATCCAAAATATTTTGGAGATATTCAGTTGCCTTCTTAGTCTCAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAAAATATTTTGGAGATATTCAGTTGCCTTCTTAGTCTCAAAAGG  150

seq1  ACATACAATGACAACCAGAGAGCTCAGTAAGACTAAGAAGTCTTATGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAATGACAACCAGAGAGCTCAGTAAGACTAAGAAGTCTTATGGAT  200

seq1  ATTGTCTTAGTTGGTTTATACCAAGTGGCTAGTCAAGATGGTGGGGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTAGTTGGTTTATACCAAGTGGCTAGTCAAGATGGTGGGGAGGT  250

seq1  TATATGGCATGTGCTCTCGTTTAGCCTTAGTAAAGATGGCTGCCAGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGCATGTGCTCTCGTTTAGCCTTAGTAAAGATGGCTGCCAGCCAC  300

seq1  ATATTTGTTTCTATCCTGATGAAGTCATCAATTAATATGGAGGCAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTTTCTATCCTGATGAAGTCATCAATTAATATGGAGGCAAACTA  350

seq1  CATGGTTGCTATTTAAAAATATCTATTTTTCTAAACAACAATGTAATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGCTATTTAAAAATATCTATTTTTCTAAACAACAATGTAATCTA  400

seq1  AGTTGCATGTATTTTAGATAGTTCTGAGCAGGGTCCATGCGGAACATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCATGTATTTTAGATAGTTCTGAGCAGGGTCCATGCGGAACATAGA  450

seq1  ATGTAGTCTTCCAATGGGTAACTATTTTAGGTGGTTCTGAGCAGTAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTCTTCCAATGGGTAACTATTTTAGGTGGTTCTGAGCAGTAAATG  500

seq1  GGTTTCTCACTAAGAACAGCTATTTGAACATTCAGCAAAGTACTCAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCACTAAGAACAGCTATTTGAACATTCAGCAAAGTACTCAAGAG  550

seq1  TTTGGTGTGGTCAGATAGCTTTTTTAGATGATTGATATATGTCACTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTGGTCAGATAGCTTTTTTAGATGATTGATATATGTCACTTGCC  600

seq1  CAGTAACCAGGAGCCACAGGTTAAACTGATCAGAAGTAAGACTTGGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACCAGGAGCCACAGGTTAAACTGATCAGAAGTAAGACTTGGATTC  650

seq1  TTGACTTGAACCTGAATCTTCTTCTGCAGTGTCAAAACTAGAAAAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGAACCTGAATCTTCTTCTGCAGTGTCAAAACTAGAAAAGTATT  700

seq1  GGCTGAGTCTGGGTCCTTGCCTGAAATTCAAACATGCTTGAGAATTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGTCTGGGTCCTTGCCTGAAATTCAAACATGCTTGAGAATTAAAT  750

seq1  AAATCCTTTTGTTTTAACCACCCATTCATTATCTTTCTTTATTTTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTTTGTTTTAACCACCCATTCATTATCTTTCTTTATTTTTCTCT  800

seq1  TATTACATTGTAGGCCTCATGTAGCAAATACTAACCTTCAGTGTTATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATTGTAGGCCTCATGTAGCAAATACTAACCTTCAGTGTTATGTA  850

seq1  GCAGAAGATGGCCTTGAACTTCTGATCCTCTAATCCATCTCCTACGTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGATGGCCTTGAACTTCTGATCCTCTAATCCATCTCCTACGTATG  900

seq1  CTCAAAAGAGGAAGTGTTCTCCGTTAACTGCTCATCCACTCATCAAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGAGGAAGTGTTCTCCGTTAACTGCTCATCCACTCATCAAATAT  950

seq1  ATAATACCTAACACATCTGCACACCAAGCAAATCATGAG-AGAAGAAGAC  999
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAATACCTAACACATCTGCACACCAAGCAAATCATGAGAAGAAGAAGAC  1000

seq1  AGTGGAACAGCCATTACCACCTTACAGTGTAACTAGAAGGGGTATGCA-C  1048
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTGG-ACAGCCATTACCACCTTACAGTGTAACTAGAAGGGGTATGCACC  1049

seq1  AGATGTACTGCCATCACGGAAGCCATGAAGTAA-CACGGAGCATAGAGAT  1097
      |||||||||| |||||||| |||| || ||||| | ||||||  ||||||
seq2  AGATGTACTG-CATCACGGGAGCC-TGGAGTAACCCCGGAGCTAAGAGAT  1097

seq1  ATAACAAACTTTGATAGGAATATCCAACTAAGAG  1131
      ||||||||||||||||||||  |||| |||||||
seq2  ATAACAAACTTTGATAGGAAATTCCACCTAAGAG  1131

seq1: chr7_91774557_91775023
seq2: B6Ng01-153F24.g_503_917 (reverse)

seq1  AAATATCTTCAACAAAATTATAGAAGAAATATTCCCAAACCTAAAGAAAG  50
      ||||||||| | |||||||||||||||||  ||| | |||||||||||||
seq2  AAATATCTTTATCAAAATTATAGAAGAAAATTTCTCTAACCTAAAGAAAG  50

seq1  AGATGCCCATGAACATACAAGAAGCCTACAAAACT-CCAAATAGACTGGA  99
      | |||||||||||||||||||||| ||||| | || ||||||||||||||
seq2  AAATGCCCATGAACATACAAGAAG-CTACAGAGCTCCCAAATAGACTGGA  99

seq1  ------CCAGAAAAGAAATTCCT-CCCGACACATAATAATCAGAACAACA  142
            ||| ||| ||||||||| ||| |||||||||||||||||||| |
seq2  GAATTTCCA-AAAGGAAATTCCTCCCCAACACATAATAATCAGAACAAGA  148

seq1  AATGCACTAAATAAA-GATAGAATATTAAAAGCAGTAAGGGAAAAAGGTC  191
      |||||||||| |||| ||||||| |||||||||||||||||||||| |||
seq2  AATGCACTAATTAAAGGATAGAACATTAAAAGCAGTAAGGGAAAAAAGTC  198

seq1  AAGTAACATATAAAGGCAAGCCTATCAGAATGACACCAGATTTTTTACCA  241
      ||||||||||||||||||  ||||||| ||| ||||||||||| | ||||
seq2  AAGTAACATATAAAGGCAGACCTATCATAATTACACCAGATTTCTCACCA  248

seq1  GAGATTATGAAAGCCAGAAGATCCTGGACAGATGATATACAGACACTAAG  291
      |||| |||||||| | ||||||||||||||||||           ||| |
seq2  GAGACTATGAAAGTCCGAAGATCCTGGACAGATG-----------CTATG  287

seq1  AGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTA  341
      |||||||||||||||||||||||||||||||||||| ||||  |||||||
seq2  AGAACACAAATGCCAGCCCAGGCTACTATACCCAGCAAAACAGTCAATTA  337

seq1  CCATAGATGGAGAAACCAAAGTATTCCATGACAAAATAAAACCCAAAAAA  391
      |||||||||||||||         ||||||||||||  | |  |      
seq2  CCATAGATGGAGAAA---------TCCATGACAAAACCAGATTC------  372

seq1  ACCAAAAAAAAAAAAAAAAAAAAAAAAACCCAAACACATTATCTTTTCAC  441
                                       ||||| ||||||| |||
seq2  ---------------------------------ACACAATATCTTTCCAC  389

seq1  CAATCCAGCCCTTCAAAGGATAATAA  467
      ||||||||||||||| ||||||||||
seq2  CAATCCAGCCCTTCAGAGGATAATAA  415