BAC Information

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BAC

Clone NameB6Ng01-154J03
Chromosome14 (Build37)
Map Location 8,434,746 - 8,435,901
singlet/doubletsinglet
Overlap geneLOC100041881
Upstream geneLOC100042024, LOC100041664, LOC100042077, LOC100041675, LOC666329, EG666833, LOC100042043, EG666918, LOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304
Downstream geneLOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154J03.bB6Ng01-154J03.g
ACCDH949579DH949580
length1,1361,216
definitionDH949579|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J03, 5' end.DH949580|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgttgatcagagcgggctgcaaggctaggtttttataagtaa
tggatacctgaactttgaggaattaattgcctggctcctggatgtgaagc
tgtgcaatgtgtctctaagcaatcagcatcctttcaaagagtaagaaatg
gaacccgtcttcttccccaaataggcatgggccttagaccacctttcact
tcagtcacccatgactggattctgggaaatgttgctatataaaacctgaa
agtttaatgtgtaggttgaaatacaggatagctgccaaagtgacctttca
ctatatagagtgtggggaagagaacattagaatcataatcacattttggt
cccagcttgtgccctctgtcttctttacattaaaaggaaaagtctgaact
gtgttaggccttttactaggggtctttgtcttgacttgtctgtgaccaaa
tagtcagactaagacaaaggtcaataaaagggcattgttttgtttttggc
cgtgtatgggctttctgtactctaggcactgatctggatctccgaccaag
gccatttaatgctattgtttcttagaaagttctcggcagtgtgtacttgt
aggtacagaagttcatattatagggccagaaggacttttgaagtccattt
taccccatgttttccctagataaatagaataactgaagcacaagagaggc
tgtctctgtgtttgagaaacatggcagcactctcttgctgaatgacctga
agggatttcacgttttcagtgtagttaaaatctcttagagctggcagctg
atcatagctgggcttaaggttgcacctgaaacctgaaagaatcaaaaccc
caaatcttaatttccaggaattttcaaggtcaaggctaagtgacaaacta
ggggaggaacctgaagggctaaaagaattgatctactgagagagcacccc
cccccccaagtcggtagggacttcaccattggaaaatcactaacagcact
gtgaagttttctagtgacagcagagctgtccttttctaccctctccttca
gccctctcccccactgtgtagatttgagtcgatgtgcattgtgcactgct
gctgcagtagctcttcctgtgctgtgctgaacagct
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagagacaatgcgcagagaggcagtgcgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
gcttgccgagtcggtccgtaaatatggaaccaatgctaattttaccttgg
tgcagttagacaggcttgccggcatggcactaactcctgccgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agctctttggcatgaaactgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcaaacaaactaccattggggagcttatgccca
agtttcctccacggctattagggcctggaaggcgctctcccgagcaggtg
aaaccactggtcaattaacaaaagttgtccagggacctcaggagtccttc
tcagattttgtggccagaatgacagaggcagcagagcgtatttttggaga
gtcagagcaagctgcgcctctgatagaacagctcatctatgagcaagcca
caaaggagtgccgagcggccatagccccagaaagaacaaaggcttacaga
ctggctcaggtctgtcgagagcttgggggacctctcagcaatgcagttta
gcggctgcatccttcatcccaaaacgctcatggcagaaatatcagaggac
atgtttactgcgaaagctggcattttagaaagatgcagagctccagataa
cagaggactctcccctctttgcctctagtgtggcaaggttatctataagc
tgacaagttcgctcttgtgaggaattaaggcagtcttccccacttatagt
catagctttgccaacgatcatcggccttggttcaaggcatcaagaattgg
aactggctttgttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_8434746_8435901
seq2: B6Ng01-154J03.b_42_1177

seq1  GAATTCTGTGTTGATCAGAGCGGGCTGCAAGGCTAGGTTTTTATAAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTTGATCAGAGCGGGCTGCAAGGCTAGGTTTTTATAAGTAA  50

seq1  TGGATACCTGAACTTTGAGGAATTAATTGCCTGGCTCCTGGATGTGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACCTGAACTTTGAGGAATTAATTGCCTGGCTCCTGGATGTGAAGC  100

seq1  TGTGCAATGTGTCTCTAAGCAATCAGCATCCTTTCAAAGAGTAAGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAATGTGTCTCTAAGCAATCAGCATCCTTTCAAAGAGTAAGAAATG  150

seq1  GAACCCGTCTTCTTCCCCAAATAGGCATGGGCCTTAGACCACCTTTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCGTCTTCTTCCCCAAATAGGCATGGGCCTTAGACCACCTTTCACT  200

seq1  TCAGTCACCCATGACTGGATTCTGGGAAATGTTGCTATATAAAACCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACCCATGACTGGATTCTGGGAAATGTTGCTATATAAAACCTGAA  250

seq1  AGTTTAATGTGTAGGTTGAAATACAGGATAGCTGCCAAAGTGACCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATGTGTAGGTTGAAATACAGGATAGCTGCCAAAGTGACCTTTCA  300

seq1  CTATATAGAGTGTGGGGAAGAGAACATTAGAATCATAATCACATTTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGAGTGTGGGGAAGAGAACATTAGAATCATAATCACATTTTGGT  350

seq1  CCCAGCTTGTGCCCTCTGTCTTCTTTACATTAAAAGGAAAAGTCTGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTGTGCCCTCTGTCTTCTTTACATTAAAAGGAAAAGTCTGAACT  400

seq1  GTGTTAGGCCTTTTACTAGGGGTCTTTGTCTTGACTTGTCTGTGACCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGGCCTTTTACTAGGGGTCTTTGTCTTGACTTGTCTGTGACCAAA  450

seq1  TAGTCAGACTAAGACAAAGGTCAATAAAAGGGCATTGTTTTGTTTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGACTAAGACAAAGGTCAATAAAAGGGCATTGTTTTGTTTTTGGC  500

seq1  CGTGTATGGGCTTTCTGTACTCTAGGCACTGATCTGGATCTCCGACCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATGGGCTTTCTGTACTCTAGGCACTGATCTGGATCTCCGACCAAG  550

seq1  GCCATTTAATGCTATTGTTTCTTAGAAAGTTCTCGGCAGTGTGTACTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTAATGCTATTGTTTCTTAGAAAGTTCTCGGCAGTGTGTACTTGT  600

seq1  AGGTACAGAAGTTCATATTATAGGGCCAGAAGGACTTTTGAAGTCCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAGAAGTTCATATTATAGGGCCAGAAGGACTTTTGAAGTCCATTT  650

seq1  TACCCCATGTTTTCCCTAGATAAATAGAATAACTGAAGCACAAGAGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCATGTTTTCCCTAGATAAATAGAATAACTGAAGCACAAGAGAGGC  700

seq1  TGTCTCTGTGTTTGAGAAACATGGCAGCACTCTCTTGCTGAATGACCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGTGTTTGAGAAACATGGCAGCACTCTCTTGCTGAATGACCTGA  750

seq1  AGGGATTTCACGTTTTCAGTGTAGTTAAAATCTCTTAGAGCTGGCAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTTCACGTTTTCAGTGTAGTTAAAATCTCTTAGAGCTGGCAGCTG  800

seq1  ATCATAGCTGGGCTTAAGGTTGCACCTGAAACCTGAAAGAATCAAAACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCTGGGCTTAAGGTTGCACCTGAAACCTGAAAGAATCAAAACCC  850

seq1  CAAATCTTAATTTCCAGGAATTTTCAAGGTCAAGGCTAAGTGACAAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTAATTTCCAGGAATTTTCAAGGTCAAGGCTAAGTGACAAACTA  900

seq1  GGGGAGGAACCTGAAGGGCTAAAAGAATTGATCTACTGAAGAGAGCACCC  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGGAGGAACCTGAAGGGCTAAAAGAATTGATCTACTG-AGAGAGCACCC  949

seq1  CCCCCCCCAAGTCGGTAGGGACTTCACCATTGGAAAATCACTAACAGCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCAAGTCGGTAGGGACTTCACCATTGGAAAATCACTAACAGCAC  999

seq1  TGTGAAGGTTTCTAAGGTGGACAGCAGGAAGCCTGTCCTTTTCCTACCCT  1050
      ||||||| ||||||  || ||||||||  || |||||||||| |||||||
seq2  TGTGAAGTTTTCTA--GT-GACAGCAG--AG-CTGTCCTTTT-CTACCCT  1042

seq1  CTCCCTCAGCCCCTCTTCCCCCACCTGTGTAGGATTTTGAGGTCGAATGT  1100
      |||| |||| ||||| ||||||| ||||||||   ||||| |||| ||||
seq2  CTCCTTCAG-CCCTC-TCCCCCA-CTGTGTAG--ATTTGA-GTCG-ATGT  1085

seq1  GCATTGTGCACTGCTGCTGCAAGGTAGCTCTTCCCTGTGGCTGTGCTGAA  1150
      |||||||||||||||||||||  ||||||||| ||||| |||||||||||
seq2  GCATTGTGCACTGCTGCTGCA--GTAGCTCTT-CCTGT-GCTGTGCTGAA  1131

seq1  GCAGCT  1156
       |||||
seq2  -CAGCT  1136