BAC Information

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BAC

Clone NameB6Ng01-155M04
Chromosome14 (Build37)5 (Build37)
Map Location 92,674,889 - 92,676,04518,084,511 - 18,084,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155M04.bB6Ng01-155M04.g
ACCDH950454DH950455
length1,134383
definitionDH950454|Mus musculus domesticus DNA, BAC clone: B6Ng01-155M04, 5' end.DH950455|Mus musculus domesticus DNA, BAC clone: B6Ng01-155M04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,674,889 - 92,676,045)(18,084,511 - 18,084,575)
sequence
gaattctttatctggaaatcgcacatttgcttctcagatggtagagctct
atatacaatgtttgtttattcatagactaagcttgccttctattccctct
ttaaaagactagcatcaaccactggtcaattttattttttctttattatt
taactgctaggaacttgcatgcccactgctattatttcttcaaaaatgaa
tgtcttttaatttaaaacttttctcctccagtaacctcttcattaaatct
aaccagtgccaaatttaatgtgggaaaacaaaacagtcttactcctaact
gttgtgataccatatgaatgactgtaagctcaagccagacaaataccatg
gagaatagaagtggtcaagtaatcccaactttagctgggaatcttattgc
aattagtggcttctgggtgaagaaaactcagtacacttcaaggccattgg
gagcctacatttgttaaagtagatgaccttacatgctaatacatatcatc
aggaataagtgaattctctgaatttcaaatactaacatgtaagatttgaa
aagaatagtggtaaggaatctggaaggtttagagagcaaagaatgaggag
gaattgatcaggatatataatatatttagataaaactataaaatataaaa
atatttaaaaatcatcaaaattttaaatagcaaaggacaagctagatacc
tatgttgtataagtgcgtatcaaccaagcagatttatattttaatgagat
atttttatttacatttcaaatttaatcctctattcaatctcccctcaccc
tgctcacaaacccacccactcctgctctcctgtcctaggattcccctgaa
ttggggtatcaagccttcaccagaccaagggcctctcctctcattgatgt
ctcacaagaccatcctctgctacatatgcagctggagtcatgagtcccac
catgtgtactccttagtggcagtttattcctgggagctctggggtactgt
ggttcatatgtgtctctatggggctgcaaacccttcagctcgtgagtctt
tttctctagtctcatagaacccatactcagtcattgatgctggagaacat
cacttctgtatttgtcagctctgcggcctctcag
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggagaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggacccagcaatacctctcctgggc
atatatccagaagatgccccaactagtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_92674889_92676045
seq2: B6Ng01-155M04.b_46_1179

seq1  GAATTCTTTATCTGGAAATCGCACATTTGCTTCTCAGATGGTAGAGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCTGGAAATCGCACATTTGCTTCTCAGATGGTAGAGCTCT  50

seq1  ATATACAATGTTTGTTTATTCATAGACTAAGCTTGCCTTCTATTCCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAATGTTTGTTTATTCATAGACTAAGCTTGCCTTCTATTCCCTCT  100

seq1  TTAAAAGACTAGCATCAACCACTGGTCAATTTTATTTTTTCTTTATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGACTAGCATCAACCACTGGTCAATTTTATTTTTTCTTTATTATT  150

seq1  TAACTGCTAGGAACTTGCATGCCCACTGCTATTATTTCTTCAAAAATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTAGGAACTTGCATGCCCACTGCTATTATTTCTTCAAAAATGAA  200

seq1  TGTCTTTTAATTTAAAACTTTTCTCCTCCAGTAACCTCTTCATTAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTAATTTAAAACTTTTCTCCTCCAGTAACCTCTTCATTAAATCT  250

seq1  AACCAGTGCCAAATTTAATGTGGGAAAACAAAACAGTCTTACTCCTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGCCAAATTTAATGTGGGAAAACAAAACAGTCTTACTCCTAACT  300

seq1  GTTGTGATACCATATGAATGACTGTAAGCTCAAGCCAGACAAATACCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGATACCATATGAATGACTGTAAGCTCAAGCCAGACAAATACCATG  350

seq1  GAGAATAGAAGTGGTCAAGTAATCCCAACTTTAGCTGGGAATCTTATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGAAGTGGTCAAGTAATCCCAACTTTAGCTGGGAATCTTATTGC  400

seq1  AATTAGTGGCTTCTGGGTGAAGAAAACTCAGTACACTTCAAGGCCATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTGGCTTCTGGGTGAAGAAAACTCAGTACACTTCAAGGCCATTGG  450

seq1  GAGCCTACATTTGTTAAAGTAGATGACCTTACATGCTAATACATATCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTACATTTGTTAAAGTAGATGACCTTACATGCTAATACATATCATC  500

seq1  AGGAATAAGTGAATTCTCTGAATTTCAAATACTAACATGTAAGATTTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAAGTGAATTCTCTGAATTTCAAATACTAACATGTAAGATTTGAA  550

seq1  AAGAATAGTGGTAAGGAATCTGGAAGGTTTAGAGAGCAAAGAATGAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGTGGTAAGGAATCTGGAAGGTTTAGAGAGCAAAGAATGAGGAG  600

seq1  GAATTGATCAGGATATATAATATATTTAGATAAAACTATAAAATATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATCAGGATATATAATATATTTAGATAAAACTATAAAATATAAAA  650

seq1  ATATTTAAAAATCATCAAAATTTTAAATAGCAAAGGACAAGCTAGATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAAAATCATCAAAATTTTAAATAGCAAAGGACAAGCTAGATACC  700

seq1  TATGTTGTATAAGTGCGTATCAACCAAGCAGATTTATATTTTAATGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTATAAGTGCGTATCAACCAAGCAGATTTATATTTTAATGAGAT  750

seq1  ATTTTTATTTACATTTCAAATTTAATCCTCTATTCAATCTCCCCTCACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTACATTTCAAATTTAATCCTCTATTCAATCTCCCCTCACCC  800

seq1  TGCTCACAAACCCACCCACTCCTGCTCTCCTGTCCTAGGATTCCCCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACAAACCCACCCACTCCTGCTCTCCTGTCCTAGGATTCCCCTGAA  850

seq1  TTGGGGTATCAAGCCTTCACCAGACCAAGGGCCTCTCCTCTCATTGATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTATCAAGCCTTCACCAGACCAAGGGCCTCTCCTCTCATTGATGT  900

seq1  CTCACAAGACCATCCTCTGCTACATATGCAGCTGGAGTCATGAGTCCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGACCATCCTCTGCTACATATGCAGCTGGAGTCATGAGTCCCAC  950

seq1  CATGTGTACTCCTTAGTTGGCAGTTTAATTCCTGGGAGCTCTGGGGTACT  1000
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  CATGTGTACTCCTTAG-TGGCAGTTT-ATTCCTGGGAGCTCTGGGGTACT  998

seq1  TGTTGGTTCATATTGTTGTTCCTCCTATGGGGCTGCAAACCCCTTCAGCT  1050
         |||||||||    |||  || ||||||||||||||| ||||||||||
seq2  --GTGGTTCATA----TGTGTCT-CTATGGGGCTGCAAA-CCCTTCAGCT  1040

seq1  CGTTGAGTC-TTTTCTCTAGTTCCTTCATTAAGGACCCCATACTCAGTCC  1099
      || |||||| |||||||||||    ||||    || ||||||||||||| 
seq2  CG-TGAGTCTTTTTCTCTAGT---CTCAT---AGAACCCATACTCAGTC-  1082

seq1  AATGGATGGCTGAGAACATCCACTTCTGTATTTGTCAGGCTCTGGCAGAG  1149
       || ||||   |||||||| ||||||||||||||||| ||||||     |
seq2  -ATTGATGCTGGAGAACAT-CACTTCTGTATTTGTCA-GCTCTG---CGG  1126

seq1  CCTCTCAG  1157
      ||||||||
seq2  CCTCTCAG  1134

seq1: chr5_18084511_18084575
seq2: B6Ng01-155M04.g_386_450 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGG  65
      |||||||| ||||||
seq2  CTTCTTACTAGTTGG  65