BAC Information

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BAC

Clone NameB6Ng01-156B05
Chromosome14 (Build37)
Map Location 118,025,718 - 118,155,668
singlet/doubletdoublet
Overlap geneGpc6
Upstream genenone
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156B05.bB6Ng01-156B05.g
ACCDH950677DH950678
length1,1341,157
definitionDH950677|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B05, 5' end.DH950678|Mus musculus domesticus DNA, BAC clone: B6Ng01-156B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,025,718 - 118,026,868)(118,154,480 - 118,155,668)
sequence
gaattccccaccagcatagaccagtaaagcaaaataaatacttatctgga
tctgcaatttagtcacacatttgttagatgaattagtcaaagtaccagtt
tcattatctgtacatatacgtacaatgttacaatattacagtgttcacaa
aggcatcagcaaaactggtaagagaatgagtggtctgtcaaacattgttg
tgtaaatgcttttcccctggtcattgcctgaaccccttcttcccttgtat
cctggtatcgattcatcagaacctacacttttcttacgtccaattgcatc
tgctgtttatgctatatggactgtttagagccttcatgacattttcctta
aattattatgtattcatctaaaatattaactgtggtgtgctgttgactgt
cagcaaaagagacaactcggtgctggttctcatggcctttgcaatgtcaa
gacttaattgaaaaggataagtacttagaattcacttggtgtctggattg
tgtcaggagaaaggtgttttaagtgatcaagtgcaaaccacaaaggaatt
ccaccacctctgaaggcctgtggctgtgctgagggtgtttcccttctgtc
tcaaaagaaaatcaggaatctattcaagattaatttcttagcaacatctt
caacaaattaaacccatagctctgtataagagcaataattaaaattctta
ccgaaataaaaaagaaaagaaagaactctttatgaaaacaccttttttta
agttgctgacaaccttgaaaagaagtctactagaccaagctgaatcctct
taaaaagcatcagtttagtagttttagctcgtgtctcaactgccctctag
cagcctatagaacattccagaataaagcacagcccacgttatccttggtg
atcagtcagaatgaatgggcgatctgtgaacaccctaagccagacagtag
ccctgagaacatgaaagccattcctagctgtctactcttagaacagcaag
agaaatccagtcaggacacgagtctgtagaggcacttcgcccagctggtc
ctttgtgtgtaccaccagtttgtccagtagcttctgaatggtgctacgtg
caaatgacttctttagaaaaaaatgtgtttggat
gaattcttttacactgtttgtgcatgatcgggctctcctggggaaccctg
tgtccgaccttgttttcactcagaacatttcatgatcacttgtttttgta
ggggcagtaagtctggcttccagaaattagcgtttctttctctagtagca
gcggcgccaaagggatgctcttttaatcaacctggtgccataaaataact
tgaagcagtaactaactacgaaagtccatccctggaggtcctgcctggcc
agcttgctcaagtctccacttctcatccaatttccctccactctgaagcc
agagtgctagttttaattttctctggaacggaaaaaagtaggcagatcgg
caagcagaaatctccccgagcatcaaagagagctaggaatgtaagtctct
tcccaactcatcctctgtgttgaggtcctgcctctgtctccagagaatat
ggctgtaaatctgtaaaacttcccatccacgagcaacagtcctcctcctt
ggttgccttctctgctggactttttgactttccctttataacttgatgta
cactggtcaggtccagctgtatgttcattttgtctccttatatccacttg
tatttatgttctagcccttgggctaggcaagtactcacaattcataaagg
tgattcttttttatgtcaggaagctaagcaccctacatgaggattcctag
agttcagtattgtctttccttttcttgttcatgcaggaggatttgaaaca
ccaagtcaatgagtagaatttgatagtgatggtaacttggaggcgtgcag
cattgtgaagcatgtaaggctctttctctgcacctttcctgcccagactg
gcttatcctttaatcttccattcaggtttggaggatgaacagtttcatcc
ttggaaattttgttgcacacaaattagatgagaacgatggctgtaacagt
accatgagcagcatggtgagcgcttgctttctttcaaagtcacaaaggtc
aaagtcacctggtcaaacttcactagattgaacagtacttatcagtagca
gcgatttattaaaagccgcttctagctggtccgtcctctgcctctgcttt
agagctgtgtcagcgggagtaatcaagttccaggaaggtgagactgtctg
catgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118025718_118026868
seq2: B6Ng01-156B05.b_47_1180

seq1  GAATTCCCCACCAGCATAGACCAGTAAAGCAAAATAAATACTTATCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACCAGCATAGACCAGTAAAGCAAAATAAATACTTATCTGGA  50

seq1  TCTGCAATTTAGTCACACATTTGTTAGATGAATTAGTCAAAGTACCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATTTAGTCACACATTTGTTAGATGAATTAGTCAAAGTACCAGTT  100

seq1  TCATTATCTGTACATATACGTACAATGTTACAATATTACAGTGTTCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATCTGTACATATACGTACAATGTTACAATATTACAGTGTTCACAA  150

seq1  AGGCATCAGCAAAACTGGTAAGAGAATGAGTGGTCTGTCAAACATTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCAGCAAAACTGGTAAGAGAATGAGTGGTCTGTCAAACATTGTTG  200

seq1  TGTAAATGCTTTTCCCCTGGTCATTGCCTGAACCCCTTCTTCCCTTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGCTTTTCCCCTGGTCATTGCCTGAACCCCTTCTTCCCTTGTAT  250

seq1  CCTGGTATCGATTCATCAGAACCTACACTTTTCTTACGTCCAATTGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTATCGATTCATCAGAACCTACACTTTTCTTACGTCCAATTGCATC  300

seq1  TGCTGTTTATGCTATATGGACTGTTTAGAGCCTTCATGACATTTTCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTATGCTATATGGACTGTTTAGAGCCTTCATGACATTTTCCTTA  350

seq1  AATTATTATGTATTCATCTAAAATATTAACTGTGGTGTGCTGTTGACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTATGTATTCATCTAAAATATTAACTGTGGTGTGCTGTTGACTGT  400

seq1  CAGCAAAAGAGACAACTCGGTGCTGGTTCTCATGGCCTTTGCAATGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAAGAGACAACTCGGTGCTGGTTCTCATGGCCTTTGCAATGTCAA  450

seq1  GACTTAATTGAAAAGGATAAGTACTTAGAATTCACTTGGTGTCTGGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATTGAAAAGGATAAGTACTTAGAATTCACTTGGTGTCTGGATTG  500

seq1  TGTCAGGAGAAAGGTGTTTTAAGTGATCAAGTGCAAACCACAAAGGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGAGAAAGGTGTTTTAAGTGATCAAGTGCAAACCACAAAGGAATT  550

seq1  CCACCACCTCTGAAGGCCTGTGGCTGTGCTGAGGGTGTTTCCCTTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCTCTGAAGGCCTGTGGCTGTGCTGAGGGTGTTTCCCTTCTGTC  600

seq1  TCAAAAGAAAATCAGGAATCTATTCAAGATTAATTTCTTAGCAACATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAAATCAGGAATCTATTCAAGATTAATTTCTTAGCAACATCTT  650

seq1  CAACAAATTAAACCCATAGCTCTGTATAAGAGCAATAATTAAAATTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATTAAACCCATAGCTCTGTATAAGAGCAATAATTAAAATTCTTA  700

seq1  CCGAAATAAAAAAGAAAAGAAAGAACTCTTTATGAAAACACCTTTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAATAAAAAAGAAAAGAAAGAACTCTTTATGAAAACACCTTTTTTTA  750

seq1  AGTTGCTGACAACCTTGAAAAGAAGTCTACTAGACCAAGCTGAATCCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTGACAACCTTGAAAAGAAGTCTACTAGACCAAGCTGAATCCTCT  800

seq1  TAAAAAGCATCAGTTTAGTAGTTTTAGCTCGTGTCTCAACTGCCCTCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCATCAGTTTAGTAGTTTTAGCTCGTGTCTCAACTGCCCTCTAG  850

seq1  CAGCCTATAGAACATTCCAGAATAAAGCACAGCCCACGTTATCCTTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATAGAACATTCCAGAATAAAGCACAGCCCACGTTATCCTTGGTG  900

seq1  ATCAGTCAGAATGAATGGGCGATCTGTGAACACCCTAAGCCAGACAGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAGAATGAATGGGCGATCTGTGAACACCCTAAGCCAGACAGTAG  950

seq1  CCCTGAGGAACATGAAAGCCATTCCTAGCCTGTTCTTACTCTAAGGAACA  1000
      |||||| ||||||||||||||||||||| ||||   |||||| | |||||
seq2  CCCTGA-GAACATGAAAGCCATTCCTAG-CTGT--CTACTCTTA-GAACA  995

seq1  GCAAGAGAAATCCCAGTCAGGACACGGAAGGTCTGTAGAGGCACTTCGCC  1050
      ||||||||||| ||||||||||||||    ||||||||||||||||||||
seq2  GCAAGAGAAAT-CCAGTCAGGACACG---AGTCTGTAGAGGCACTTCGCC  1041

seq1  CAGCTGGTTCTTTGTGTGTACACACAGTTTGTCCCAGGTAAGCTTCTGAA  1100
      |||||||| ||||||||||||   |||||||| ||||   ||||||||||
seq2  CAGCTGGTCCTTTGTGTGTACCACCAGTTTGT-CCAG--TAGCTTCTGAA  1088

seq1  TGGTGCCTACGTGCAAAATGACTTTCTTTTAGAAAAAAAATGTGTTTGGA  1150
      ||||| |||||||| |||||||||   ||||| |||||||||||||||||
seq2  TGGTG-CTACGTGC-AAATGACTT--CTTTAG-AAAAAAATGTGTTTGGA  1133

seq1  T  1151
      |
seq2  T  1134

seq1: chr14_118154480_118155668
seq2: B6Ng01-156B05.g_66_1222 (reverse)

seq1  AGTCAATTGCAGAACGTCTCACCTTCCTGGGACTTGAGTAACATCCCGCT  50
      |||||  ||||||  ||||||||||||||| |||||| ||   |||||||
seq2  AGTCA--TGCAGACAGTCTCACCTTCCTGGAACTTGATTA--CTCCCGCT  46

seq1  GACACCAGCTTCATAAAAGCAGAAGGCAGAGAGACGACACAGCTAGGAAA  100
      |||| |||||     ||||||| |||||||| ||||   |||||||  ||
seq2  GACA-CAGCT---CTAAAGCAG-AGGCAGAG-GACGGACCAGCTAG--AA  88

seq1  GCGGCTTTTAAATTAAAATCGCTGCTACCTGATTAAGTTACTGTTCAATC  150
      |||||||||||    |||||||||||| |||| |||| ||||||||||||
seq2  GCGGCTTTTAA---TAAATCGCTGCTA-CTGA-TAAG-TACTGTTCAATC  132

seq1  TTTAGTGAAGTTTTGACCAGGTTGAACTTTTGACCTTTGTGACCTTTGGA  200
        |||||||| |||||||||| |||   |||||||||||||| |||||  
seq2  --TAGTGAAG-TTTGACCAGG-TGA--CTTTGACCTTTGTGA-CTTTG--  173

seq1  AAGGAAAGCAAGCGCCTCACCATGGCTGCCTCATTGGTACTGTTACAGCC  250
      || ||||||||||| |||||||| |||| |||| ||||||||||||||||
seq2  AAAGAAAGCAAGCG-CTCACCAT-GCTG-CTCA-TGGTACTGTTACAGCC  219

seq1  ATCGTTCTCATCTAATTTGTTGTGCAACAAAATTTCCAAGGATGAAACTG  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCGTTCTCATCTAATTTG-TGTGCAACAAAATTTCCAAGGATGAAACTG  268

seq1  TTCATCCTCCAAACCTGAATGGAAGATTAAAGGATAAGCCAGTCTGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTCCAAACCTGAATGGAAGATTAAAGGATAAGCCAGTCTGGGCA  318

seq1  GGAAAGGTGCAGGGAAAGAGCCTTACATGCTTCACAATGCTGCACGCCTC  400
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTGCAGAGAAAGAGCCTTACATGCTTCACAATGCTGCACGCCTC  368

seq1  CAAGTTACCATCACTATCAAATTCTACTCATTGACTTGGTGTTTCAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTACCATCACTATCAAATTCTACTCATTGACTTGGTGTTTCAAATC  418

seq1  CTCCTGCATGAACAAGAAAAGGAAAGACAATACTGAACTCTAGGAATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCATGAACAAGAAAAGGAAAGACAATACTGAACTCTAGGAATCCT  468

seq1  CATGTAGGGTGCTTAGCTTCCTGACATAAAAAAGAATCACCTTTATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGGGTGCTTAGCTTCCTGACATAAAAAAGAATCACCTTTATGAAT  518

seq1  TGTGAGTACTTGCCTAGCCCAAGGGCTAGAACATAAATACAAGTGGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTACTTGCCTAGCCCAAGGGCTAGAACATAAATACAAGTGGATAT  568

seq1  AAGGAGACAAAATGAACATACAGCTGGACCTGACCAGTGTACATCAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACAAAATGAACATACAGCTGGACCTGACCAGTGTACATCAAGTT  618

seq1  ATAAAGGGAAAGTCAAAAAGTCCAGCAGAGAAGGCAACCAAGGAGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGAAAGTCAAAAAGTCCAGCAGAGAAGGCAACCAAGGAGGAGGA  668

seq1  CTGTTGCTCGTGGATGGGAAGTTTTACAGATTTACAGCCATATTCTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTCGTGGATGGGAAGTTTTACAGATTTACAGCCATATTCTCTGG  718

seq1  AGACAGAGGCAGGACCTCAACACAGAGGATGAGTTGGGAAGAGACTTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGGCAGGACCTCAACACAGAGGATGAGTTGGGAAGAGACTTACA  768

seq1  TTCCTAGCTCTCTTTGATGCTCGGGGAGATTTCTGCTTGCCGATCTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCTCTCTTTGATGCTCGGGGAGATTTCTGCTTGCCGATCTGCCT  818

seq1  ACTTTTTTCCGTTCCAGAGAAAATTAAAACTAGCACTCTGGCTTCAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTCCGTTCCAGAGAAAATTAAAACTAGCACTCTGGCTTCAGAGT  868

seq1  GGAGGGAAATTGGATGAGAAGTGGAGACTTGAGCAAGCTGGCCAGGCAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAATTGGATGAGAAGTGGAGACTTGAGCAAGCTGGCCAGGCAGG  918

seq1  ACCTCCAGGGATGGACTTTCGTAGTTAGTTACTGCTTCAAGTTATTTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGGGATGGACTTTCGTAGTTAGTTACTGCTTCAAGTTATTTTAT  968

seq1  GGCACCAGGTTGATTAAAAGAGCATCCCTTTGGCGCCGCTGCTACTAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGGTTGATTAAAAGAGCATCCCTTTGGCGCCGCTGCTACTAGAG  1018

seq1  AAAGAAACGCTAATTTCTGGAAGCCAGACTTACTGCCCCTACAAAAACAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACGCTAATTTCTGGAAGCCAGACTTACTGCCCCTACAAAAACAA  1068

seq1  GTGATCATGAAATGTTCTGAGTGAAAACAAGGTCGGACACAGGGTTCCCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCATGAAATGTTCTGAGTGAAAACAAGGTCGGACACAGGGTTCCCC  1118

seq1  AGGAGAGCCCGATCATGCACAAACAGTGTAAAAGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCCCGATCATGCACAAACAGTGTAAAAGAATTC  1157