BAC Information

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BAC

Clone NameB6Ng01-156G08
Chromosome14 (Build37)
Map Location 96,418,265 - 96,544,988
singlet/doubletdoublet
Overlap geneKlhl1
Upstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156G08.bB6Ng01-156G08.g
ACCDH950912DH950913
length1,109850
definitionDH950912|Mus musculus domesticus DNA, BAC clone: B6Ng01-156G08, 5' end.DH950913|Mus musculus domesticus DNA, BAC clone: B6Ng01-156G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,418,265 - 96,419,387)(96,544,143 - 96,544,988)
sequence
gaattccttgcaaaattatgacccaggctaaatccatatttaaaaatata
ccccacaatatacttcagtttttattatgcatgctatgtatgtgctgaga
tggattattcaatttttattttctgaaataaataaaatctagtccatcat
acttagtgtaaaatttccaaacatttttgttcctggaatacctcatcata
atgtcccatgacatttcacagaactctttttgcaaagatcttacttttga
attttgttgtaaccttctctccatatggcatcctttctgagttgtctgac
cttctgagaagttaattacgtctaccagatgctggattccagtggccaga
atgtggatttggagaagaactggtgagtctgggctacacacttccttgct
gtgttttgtatgtgccctccatggctattttcctatttgttctctcatta
gccaaaaaggctactccaggtgattagagaaagaattatttaaaatgatc
ataccattctctctgattaagacataatattttttaatcaccttgtaagc
tgatggtgaaaatgtgtattcaaaaataattaccttcaattatgtttgct
ctgaactttttgttacttaaaaagcaaatgagaatgcatttaaaataaga
gccactaatgctatttactaggacaacatagtttgtaacctgaaagcatg
taacactttaagataggcaaatgacagtttaatataaaaatataattctt
ataaacatgcagaagttcaaaaatcccatcaaatgtcataataccagaag
caaagagaaaccaaatctaaagtaaactgtacaaggtacacacaagtaaa
tttagattatgaaaatgatcagaatgggttgtgagcttaagatatttcac
acaaagaattaaagctttgcaaatgattggttacagaattgaaaaaatag
aagaggacctgttcggcacttactcacagctcatccatacttgggagtgc
ttttcttttcttggtagccatctatatttgttcattcttacttaaagcca
ctaatttttttctttatctctctctagcagctgctggggattacaacatg
tattcattt
gaattcatttgctaaatttgacattcaattctactaatgtgtcaaaatgt
ggtgaatatatctcagctattttgtgtatttaaaatatgagattataaaa
agagcacattataataaataaaagttacatgggctctgtcaggctttagt
gtgcatccttgtatttcagtcatgtgtgttaggcacagcaagtctaaggc
tggctttgtatccgttgccaagatttcttggtaggcaggaatgaaaacag
tcatccacctgcctcggagcttagtgaaatccagaaataagcagctcaca
cgaagaggttcactgagcagaaaaagccggagtatcctccattgttatct
gtagattgtcttgggatcagattaaaggatgttgcatgtattaagaaaca
tagggctaaactattaataatctgttttagagtctttattctacaacttg
tcattctaataattattacctacaagacagactacctgaatattttaaat
gatatattaaagaagcaaaacatgatttgtgtatgtgtgtgcacatgtgc
atatatgtctgtgtatgtatatatgtgtatatatatatgtatgtatattc
atatgtatgtatataatatctaattttccaaagtttgaaaatttataaat
atatttttatagctttgttttaactataacaaaatggaaaaagaacttgt
gtatacaatacaggttactaaaaaaattacgtatttcaatgacaacatgt
ggagttaaggtattcctgaggtagaagcaccttttttattgttaagggaa
aggtaaagtaccctctatatgaggtgaaaggtgatttatccccaaaatgc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96418265_96419387
seq2: B6Ng01-156G08.b_45_1153

seq1  GAATTCCTTGCAAAATTATGACCCAGGCTAAATCCATATTTAAAAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCAAAATTATGACCCAGGCTAAATCCATATTTAAAAATATA  50

seq1  CCCCACAATATACTTCAGTTTTTATTATGCATGCTATGTATGTGCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAATATACTTCAGTTTTTATTATGCATGCTATGTATGTGCTGAGA  100

seq1  TGGATTATTCAATTTTTATTTTCTGAAATAAATAAAATCTAGTCCATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATTCAATTTTTATTTTCTGAAATAAATAAAATCTAGTCCATCAT  150

seq1  ACTTAGTGTAAAATTTCCAAACATTTTTGTTCCTGGAATACCTCATCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTGTAAAATTTCCAAACATTTTTGTTCCTGGAATACCTCATCATA  200

seq1  ATGTCCCATGACATTTCACAGAACTCTTTTTGCAAAGATCTTACTTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCATGACATTTCACAGAACTCTTTTTGCAAAGATCTTACTTTTGA  250

seq1  ATTTTGTTGTAACCTTCTCTCCATATGGCATCCTTTCTGAGTTGTCTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGTAACCTTCTCTCCATATGGCATCCTTTCTGAGTTGTCTGAC  300

seq1  CTTCTGAGAAGTTAATTACGTCTACCAGATGCTGGATTCCAGTGGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGAAGTTAATTACGTCTACCAGATGCTGGATTCCAGTGGCCAGA  350

seq1  ATGTGGATTTGGAGAAGAACTGGTGAGTCTGGGCTACACACTTCCTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATTTGGAGAAGAACTGGTGAGTCTGGGCTACACACTTCCTTGCT  400

seq1  GTGTTTTGTATGTGCCCTCCATGGCTATTTTCCTATTTGTTCTCTCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGTATGTGCCCTCCATGGCTATTTTCCTATTTGTTCTCTCATTA  450

seq1  GCCAAAAAGGCTACTCCAGGTGATTAGAGAAAGAATTATTTAAAATGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAAGGCTACTCCAGGTGATTAGAGAAAGAATTATTTAAAATGATC  500

seq1  ATACCATTCTCTCTGATTAAGACATAATATTTTTTAATCACCTTGTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATTCTCTCTGATTAAGACATAATATTTTTTAATCACCTTGTAAGC  550

seq1  TGATGGTGAAAATGTGTATTCAAAAATAATTACCTTCAATTATGTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGAAAATGTGTATTCAAAAATAATTACCTTCAATTATGTTTGCT  600

seq1  CTGAACTTTTTGTTACTTAAAAAGCAAATGAGAATGCATTTAAAATAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTTTTGTTACTTAAAAAGCAAATGAGAATGCATTTAAAATAAGA  650

seq1  GCCACTAATGCTATTTACTAGGACAACATAGTTTGTAACCTGAAAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAATGCTATTTACTAGGACAACATAGTTTGTAACCTGAAAGCATG  700

seq1  TAACACTTTAAGATAGGCAAATGACAGTTTAATATAAAAATATAATTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTTAAGATAGGCAAATGACAGTTTAATATAAAAATATAATTCTT  750

seq1  ATAAACATGCAGAAGTTCAAAAATCCCATCAAATGTCATAATACCAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATGCAGAAGTTCAAAAATCCCATCAAATGTCATAATACCAGAAG  800

seq1  CAAAGAGAAACCAAATCTAAAGTAAACTGTACAAGGTACACACAAGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAAACCAAATCTAAAGTAAACTGTACAAGGTACACACAAGTAAA  850

seq1  TTTAAGATTATGAAAATGATCAGAAT-GGTTGTGAGCTTAAGATATTTCA  899
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTT-AGATTATGAAAATGATCAGAATGGGTTGTGAGCTTAAGATATTTCA  899

seq1  CACAAAAGAATTAAAGCTTTGCAAATGATTGGTTAACAGAATTGAAAAAA  949
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAC-AAAGAATTAAAGCTTTGCAAATGATTGGTT-ACAGAATTGAAAAAA  947

seq1  TAGAAGAGAACCTGTTCGGCACTTACTCACCAGCTCATCCATACTTGGGA  999
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  TAGAAGAGGACCTGTTCGGCACTTACTCA-CAGCTCATCCATACTTGGGA  996

seq1  GTGCTTTTTCCTTTCTTGGTAAGCCATCTATATCTGTTTCATTCCTAACT  1049
      |||| ||||| ||||||||| |||||||||||| || |||||| || |||
seq2  GTGC-TTTTCTTTTCTTGGT-AGCCATCTATATTTG-TTCATT-CTTACT  1042

seq1  TAAAAGCCACTAATTTTTTTCTCTATCTCTCCTCCTAGCAGCTGCTGGGG  1099
      | |||||||||||||||||||| ||||||||   ||||||||||||||||
seq2  T-AAAGCCACTAATTTTTTTCTTTATCTCTC--TCTAGCAGCTGCTGGGG  1089

seq1  ATTTCACCAAACATGTATTCATTT  1123
      ||| |    |||||||||||||||
seq2  ATTAC----AACATGTATTCATTT  1109

seq1: chr14_96544143_96544988
seq2: B6Ng01-156G08.g_69_918 (reverse)

seq1  GCATTTTGGGGATATGTCACCTTTCACCTCATGTAGAGGGATACTTCTAC  50
      ||||||||||||||  |||||||||||||||| ||||||| ||||| |||
seq2  GCATTTTGGGGATAAATCACCTTTCACCTCATATAGAGGG-TACTT-TAC  48

seq1  CTTT-CCTTAACAAT-AAAAAGGTGCTTCTACCTCAGGAATTCCTTAACT  98
      |||| |||||||||| ||||||||||||||||||||||||| ||||||||
seq2  CTTTCCCTTAACAATAAAAAAGGTGCTTCTACCTCAGGAATACCTTAACT  98

seq1  CCACATGTTTGTCATTGAAATACGTAAATTTCTTAGTAACCTGTATTGTA  148
      ||||||| ||||||||||||||||||| ||| ||||||||||||||||||
seq2  CCACATG-TTGTCATTGAAATACGTAATTTTTTTAGTAACCTGTATTGTA  147

seq1  TACAC-AGTTC-TTTTCCA-TTTGTTATAGTTAAAACAAAGCTAT-AAAA  194
      ||||| ||||| ||||||| ||||||||||||||||||||||||| ||||
seq2  TACACAAGTTCTTTTTCCATTTTGTTATAGTTAAAACAAAGCTATAAAAA  197

seq1  TATATTTAT-AATTTTCAAACTTTGGAAAATTAGATATTATATACATACA  243
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATAAATTTTCAAACTTTGGAAAATTAGATATTATATACATACA  247

seq1  TATGAATATACATACATATATATATACACATATATACATACACAGACATA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATATACATACATATATATATACACATATATACATACACAGACATA  297

seq1  TATGCACATGTGCACACACATACACAAATCATGTTTTGCTTCTTTAATAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACATGTGCACACACATACACAAATCATGTTTTGCTTCTTTAATAT  347

seq1  ATCATTTAAAATATTCAGGTAGTCTGTCTTGTAGGTAATAATTATTAGAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAAAATATTCAGGTAGTCTGTCTTGTAGGTAATAATTATTAGAA  397

seq1  TGACAAGTTGTAGAATAAAGACTCTAAAACAGATTATTAATAGTTTAGCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTTGTAGAATAAAGACTCTAAAACAGATTATTAATAGTTTAGCC  447

seq1  CTATGTTTCTTAATACATGCAACATCCTTTAATCTGATCCCAAGACAATC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTTCTTAATACATGCAACATCCTTTAATCTGATCCCAAGACAATC  497

seq1  TACAGATAACAATGGAGGATACTCCGGCTTTTTCTGCTCAGTGAACCTCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATAACAATGGAGGATACTCCGGCTTTTTCTGCTCAGTGAACCTCT  547

seq1  TCGTGTGAGCTGCTTATTTCTGGATTTCACTAAGCTCCGAGGCAGGTGGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTGAGCTGCTTATTTCTGGATTTCACTAAGCTCCGAGGCAGGTGGA  597

seq1  TGACTGTTTTCATTCCTGCCTACCAAGAAATCTTGGCAACGGATACAAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTTCATTCCTGCCTACCAAGAAATCTTGGCAACGGATACAAAG  647

seq1  CCAGCCTTAGACTTGCTGTGCCTAACACACATGACTGAAATACAAGGATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTAGACTTGCTGTGCCTAACACACATGACTGAAATACAAGGATG  697

seq1  CACACTAAAGCCTGACAGAGCCCATGTAACTTTTATTTATTATAATGTGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAAAGCCTGACAGAGCCCATGTAACTTTTATTTATTATAATGTGC  747

seq1  TCTTTTTATAATCTCATATTTTAAATACACAAAATAGCTGAGATATATTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATAATCTCATATTTTAAATACACAAAATAGCTGAGATATATTC  797

seq1  ACCACATTTTGACACATTAGTAGAATTGAATGTCAAATTTAGCAAATGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTTTGACACATTAGTAGAATTGAATGTCAAATTTAGCAAATGAA  847

seq1  TTC  846
      |||
seq2  TTC  850