BAC Information

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BAC

Clone NameB6Ng01-156N09
Chromosome14 (Build37)
Map Location 4,638,819 - 4,767,988
singlet/doubletdoublet
Overlap geneLOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262
Upstream geneLOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889
Downstream geneLOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156N09.bB6Ng01-156N09.g
ACCDH951236DH951237
length1,1171,124
definitionDH951236|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N09, 5' end.DH951237|Mus musculus domesticus DNA, BAC clone: B6Ng01-156N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,766,853 - 4,767,988)(4,638,819 - 4,639,944)
sequence
gaattcctaaaagaacagaaaagctatcttccagctggtttgctaagcta
tgttcctcttcctaaccaccattgtcagacatatgccacactccctgtta
caggcccggttgccttgaaatgtataagctgcctcagacataaagatatg
gggaacattgtcaggtcatatcagatgggaggcagggaaatgctgaagtt
catagtgcttagcactatcaagcactaattaatcgtgtgtcttcaaatcc
aaagtgtctgagtcctcaccacatgacatgaccaggggagcatccttctc
tgttcttttcatcagagactcaagttacctacagtaatctggaagatgaa
gtgcttcaactcccttccatgaaaggacacactgttattctcatagtgcc
cactcctgacattttttgccactcaaaatgaaattaaatagctcccagaa
aagtagctgcaggtttgtcaattcctggctctgtcaaactaatcatcaga
aattcttgactctttttctgacgttgacaaagtccaaggcttcagcttgt
aagacctactcctggaaggcccagctcaagcctacctctaccaggaagtt
ccccaactctgcccaggactcactgtgccttctccagaatgatttccttc
ttcctttttcatgagaaaggattccctcttccttctctgttggtctggtc
tctccttcatcgccattctctttctgaaatagcctgagcagccaggaaaa
cattcctgctggtgaacccagagcaaacagaagggatgaaccacaggcac
ttgctgtcaccacaacacagatgacaacacagagaattctagttctatcc
tagatacaagagattctccaaggaaggcattactgatgatgtcactagca
actgccatgacctacctgttactagttctgtccagcttggtccttttctg
gggtgcctctctgagcctctcatggacccgtgggatcccttggcaactct
ctcaaagctggagaattctactgcttcatagatgtcatgtgctttgaggg
ggacgtggttaggactctgacatgctaagagatttgtagccccgtttcta
aggactgtggatgtagt
gaattctccagctttgaaaggagatcccacaggaccgtgagaggctccag
gagaggcaccccagaaaaggaccaagctggggagaaccagttagctgtta
ggtcatggcagttgctagtgacatcatcagtaatgccttcctggagagtc
tcttgtatttaggaaagaactagaatcttctctgttgtcacctgtgttgt
ggtgacagcaactgcctgtggttcatcccttctgtttgctctgggttcac
cagcaggaatgttttcctggctgctcaggctatgtcagaaagagaatggc
gatgaaggagagatcagaacaacagagaagggagagggaatcctttctca
tgaaaaaggaagaaggaaatcattctggagaaggcacagtgagtcctggg
cagagttggagaacttcctggtagaggtaggcttgagctgggccttccag
gagtaggtcttagaagctgaagccttggactttgtcaatgtcagaaaaag
agtcaagaatttctgatgattagtttgacagagccaggaattgacaaacc
tgcagctacttttctgggagctatttaatttcattttgagtggcaaagaa
tgccaggagtgggtactatgagaataacagtgtgtcttttcatggaagtt
agttgaagcacttcatcttccagattactgtaggtaacttgagtctctga
tgaaaagaacagagaaggatgctcccctggtcttgtcatgtggtgaggac
tcagacactttggatttgaagacacatgattaattagggcttgatagtgc
taagcactatgaactttcaggatttccctgcatcccatctgatatgacct
gacaatgttccccacatctttatgtctgaggcagcttatagatttcaagg
caacggggcctgtacagggagtgtggcatatgtctgacatttggtggtta
ggaagaggaacatagcttagcaaaccagctggtagatagctttttctgct
cttttgggattcaccctgtcttatctttctctcctcatcttcttctggaa
ctcagaatagtctccctgcccctaagccatcagtatgcaaattctttgtt
gtttatctatctttgcagggtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4766853_4767988
seq2: B6Ng01-156N09.b_44_1160 (reverse)

seq1  ACTACATCCACAGTCCCTAGAGATTTGGGTGCTAACAAAATCTCTTAAGC  50
      |||||||||||||||| |||| |    || ||||   ||||||||| |||
seq2  ACTACATCCACAGTCCTTAGAAA---CGGGGCTA--CAAATCTCTT-AGC  44

seq1  ATGTCAGAGTCCTAACCAACGTTCCCCCTCAAAAGCACATGACATCTAAT  100
      ||||||||||||||||| ||| |||||||| |||||||||||||||| ||
seq2  ATGTCAGAGTCCTAACC-ACG-TCCCCCTC-AAAGCACATGACATCT-AT  90

seq1  GAAGCAGTAGAATTCTCCAGCTTTGGAAGGAGAG-GTTGCCAAAGGGGAT  149
      ||||||||||||||||||||||||     ||||| ||||||||  |||||
seq2  GAAGCAGTAGAATTCTCCAGCTTT-----GAGAGAGTTGCCAA--GGGAT  133

seq1  CCCACGGGTCCATGAGAGGCTCCAGGAGAGGCACCCCAGAAAAGGACCAA  199
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  CCCACGGGTCCATGAGAGGCTC--AGAGAGGCACCCCAGAAAAGGACCAA  181

seq1  GCTGGACAGAACTAGTTAACAGGTAGGTCATGGCAGTTGCTAGTGACATC  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTGGACAGAACTAG-TAACAGGTAGGTCATGGCAGTTGCTAGTGACATC  230

seq1  ATCAGTAATGCCTTCCTTGGAGAATCTCTTGTATCTAGGATAGAACTAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAATGCCTTCCTTGGAGAATCTCTTGTATCTAGGATAGAACTAGA  280

seq1  ATTCTCTGTGTTGTCATCTGTGTTGTGGTGACAGCAAGTGCCTGTGGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGTGTTGTCATCTGTGTTGTGGTGACAGCAAGTGCCTGTGGTTC  330

seq1  ATCCCTTCTGTTTGCTCTGGGTTCACCAGCAGGAATGTTTTCCTGGCTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCTGTTTGCTCTGGGTTCACCAGCAGGAATGTTTTCCTGGCTGC  380

seq1  TCAGGCTATTTCAGAAAGAGAATGGCGATGAAGGAGAGACCAGACCAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTATTTCAGAAAGAGAATGGCGATGAAGGAGAGACCAGACCAACA  430

seq1  GAGAAGGAAGAGGGAATCCTTTCTCATGAAAAAGGAAGAAGGAAATCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAAGAGGGAATCCTTTCTCATGAAAAAGGAAGAAGGAAATCATT  480

seq1  CTGGAGAAGGCACAGTGAGTCCTGGGCAGAGTTGGGGAACTTCCTGGTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAGGCACAGTGAGTCCTGGGCAGAGTTGGGGAACTTCCTGGTAG  530

seq1  AGGTAGGCTTGAGCTGGGCCTTCCAGGAGTAGGTCTTACAAGCTGAAGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGCTTGAGCTGGGCCTTCCAGGAGTAGGTCTTACAAGCTGAAGCC  580

seq1  TTGGACTTTGTCAACGTCAGAAAAAGAGTCAAGAATTTCTGATGATTAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACTTTGTCAACGTCAGAAAAAGAGTCAAGAATTTCTGATGATTAGT  630

seq1  TTGACAGAGCCAGGAATTGACAAACCTGCAGCTACTTTTCTGGGAGCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGAGCCAGGAATTGACAAACCTGCAGCTACTTTTCTGGGAGCTAT  680

seq1  TTAATTTCATTTTGAGTGGCAAAAAATGTCAGGAGTGGGCACTATGAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCATTTTGAGTGGCAAAAAATGTCAGGAGTGGGCACTATGAGAA  730

seq1  TAACAGTGTGTCCTTTCATGGAAGGGAGTTGAAGCACTTCATCTTCCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGTGTCCTTTCATGGAAGGGAGTTGAAGCACTTCATCTTCCAGA  780

seq1  TTACTGTAGGTAACTTGAGTCTCTGATGAAAAGAACAGAGAAGGATGCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTAGGTAACTTGAGTCTCTGATGAAAAGAACAGAGAAGGATGCTC  830

seq1  CCCTGGTCATGTCATGTGGTGAGGACTCAGACACTTTGGATTTGAAGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTCATGTCATGTGGTGAGGACTCAGACACTTTGGATTTGAAGACA  880

seq1  CACGATTAATTAGTGCTTGATAGTGCTAAGCACTATGAACTTCAGCATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATTAATTAGTGCTTGATAGTGCTAAGCACTATGAACTTCAGCATTT  930

seq1  CCCTGCCTCCCATCTGATATGACCTGACAATGTTCCCCATATCTTTATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTCCCATCTGATATGACCTGACAATGTTCCCCATATCTTTATGT  980

seq1  CTGAGGCAGCTTATACATTTCAAGGCAACCGGGCCTGTAACAGGGAGTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAGCTTATACATTTCAAGGCAACCGGGCCTGTAACAGGGAGTGT  1030

seq1  GGCATATGTCTGACAATGGTGGTTAGGAAGAGGAACATAGCTTAGCAAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATGTCTGACAATGGTGGTTAGGAAGAGGAACATAGCTTAGCAAAC  1080

seq1  CAGCTGGAAGATAGCTTTTCTGTTCTTTTAGGAATTC  1136
      |||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGAAGATAGCTTTTCTGTTCTTTTAGGAATTC  1117

seq1: chr14_4638819_4639944
seq2: B6Ng01-156N09.g_72_1195

seq1  GAATTCTCCAGCTTTGAAAGGAGATCCCACAGGACCGTGAGAGGCTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGCTTTGAAAGGAGATCCCACAGGACCGTGAGAGGCTCCAG  50

seq1  GAGAGGCACCCCAGAAAAGGACCAAGCTGGGGAGAACCAGTTAGCTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCACCCCAGAAAAGGACCAAGCTGGGGAGAACCAGTTAGCTGTTA  100

seq1  GGTCATGGCAGTTGCTAGTGACATCATCAGTAATGCCTTCCTGGAGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGGCAGTTGCTAGTGACATCATCAGTAATGCCTTCCTGGAGAGTC  150

seq1  TCTTGTATTTAGGAAAGAACTAGAATCTTCTCTGTTGTCACCTGTGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATTTAGGAAAGAACTAGAATCTTCTCTGTTGTCACCTGTGTTGT  200

seq1  GGTGACAGCAACTGCCTGTGGTTCATCCCTTCTGTTTGCTCTGGGTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGCAACTGCCTGTGGTTCATCCCTTCTGTTTGCTCTGGGTTCAC  250

seq1  CAGCAGGAATGTTTTCCTGGCTGCTCAGGCTATGTCAGAAAGAGAATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAATGTTTTCCTGGCTGCTCAGGCTATGTCAGAAAGAGAATGGC  300

seq1  GATGAAGGAGAGATCAGAACAACAGAGAAGGGAGAGGGAATCCTTTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGGAGAGATCAGAACAACAGAGAAGGGAGAGGGAATCCTTTCTCA  350

seq1  TGAAAAAGGAAGAAGGAAATCATTCTGGAGAAGGCACAGTGAGTCCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGGAAGAAGGAAATCATTCTGGAGAAGGCACAGTGAGTCCTGGG  400

seq1  CAGAGTTGGAGAACTTCCTGGTAGAGGTAGGCTTGAGCTGGGCCTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGGAGAACTTCCTGGTAGAGGTAGGCTTGAGCTGGGCCTTCCAG  450

seq1  GAGTAGGTCTTAGAAGCTGAAGCCTTGGACTTTGTCAATGTCAGAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGTCTTAGAAGCTGAAGCCTTGGACTTTGTCAATGTCAGAAAAAG  500

seq1  AGTCAAGAATTTCTGATGATTAGTTTGACAGAGCCAGGAATTGACAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGAATTTCTGATGATTAGTTTGACAGAGCCAGGAATTGACAAACC  550

seq1  TGCAGCTACTTTTCTGGGAGCTATTTAATTTCATTTTGAGTGGCAAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTACTTTTCTGGGAGCTATTTAATTTCATTTTGAGTGGCAAAGAA  600

seq1  TGCCAGGAGTGGGTACTATGAGAATAACAGTGTGTCTTTTCATGGAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGAGTGGGTACTATGAGAATAACAGTGTGTCTTTTCATGGAAGTT  650

seq1  AGTTGAAGCACTTCATCTTCCAGATTACTGTAGGTAACTTGAGTCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGCACTTCATCTTCCAGATTACTGTAGGTAACTTGAGTCTCTGA  700

seq1  TGAAAAGAACAGAGAAGGATGCTCCCCTGGTCTTGTCATGTGGTGAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAACAGAGAAGGATGCTCCCCTGGTCTTGTCATGTGGTGAGGAC  750

seq1  TCAGACACTTTGGATTTGAAGACACATGATTAATTAGGGCTTGATAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACTTTGGATTTGAAGACACATGATTAATTAGGGCTTGATAGTGC  800

seq1  TAAGCACTATGAAC-TTCAGGATTTCCCTGCATCCCATCTGATATGACCT  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAAGCACTATGAACTTTCAGGATTTCCCTGCATCCCATCTGATATGACCT  850

seq1  GACAATGTTCCCCACATCTTTATGTCTGAGGCAGCTTATAGATTTCAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTTCCCCACATCTTTATGTCTGAGGCAGCTTATAGATTTCAAGG  900

seq1  CAACGGGGCCTGTAACAGGGAGTGTGGCATATGTCTGACA-ATGGTGGTT  948
      ||||||||||||| ||||||||||||||||||||||||||  ||||||||
seq2  CAACGGGGCCTGT-ACAGGGAGTGTGGCATATGTCTGACATTTGGTGGTT  949

seq1  AGGAAGAGGAACATAGCTTAGCAAACCAGCTGGAAGATAGC-TTTTCTGC  997
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  AGGAAGAGGAACATAGCTTAGCAAACCAGCTGGTAGATAGCTTTTTCTGC  999

seq1  TCTTTTTGGATTCACCCTGTCTTTATCTTTCTCTCCCTCCATCTTCTTCT  1047
      |||||| |||||||||||||| ||||||||||||||   |||||||||| 
seq2  TCTTTTGGGATTCACCCTGTC-TTATCTTTCTCTCC--TCATCTTCTTC-  1045

seq1  TGGGACTCAGAATAGTCTCCCCTGCCCCTAGGCCATCAAGTATGCAAATT  1097
      ||| |||||||||||||| ||||||||||| |||||| ||||||||||||
seq2  TGGAACTCAGAATAGTCT-CCCTGCCCCTAAGCCATC-AGTATGCAAATT  1093

seq1  CTTTTGTGTTTATCTATCTT--CAGGGTCTG  1126
      ||||  ||||||||||||||  |||||||||
seq2  CTTTGTTGTTTATCTATCTTTGCAGGGTCTG  1124