BAC Information

Click to search

BAC

Clone NameB6Ng01-157E04
Chromosome14 (Build37)
Map Location 118,794,336 - 118,936,732
singlet/doubletdoublet
Overlap geneAbcc4
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157E04.bB6Ng01-157E04.g
ACCDH951545DH951546
length719425
definitionDH951545|Mus musculus domesticus DNA, BAC clone: B6Ng01-157E04, 5' end.DH951546|Mus musculus domesticus DNA, BAC clone: B6Ng01-157E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,794,336 - 118,795,054)(118,936,302 - 118,936,732)
sequence
gaattccatcttgcacattgtgcctttgattaggaaagggaactggactg
gaagacgggaagcatggaatttaccctttactgtttgttgcctaaccatg
tgaccttctagaaactgtaaaagggaccaaaacgtagcgtcgtgcaagct
acagccaatcttcccaaggaagaagagatgtctactccatttcttctcaa
tttttgcttgtgactctctaagatcaaaggtttagagaggtttgaggcag
ctaggccctcagaggccctagtctcttgttctagagtgaaatccaaagca
agagagcaggaaaaaatttaatcttcccactagtatgattacatggacat
tttagagtttatacaacaggcacctgtgtatcagaccaacctgcaggctt
aggtagatcctgtgttcttgataattgtgctacctgcatctcgtcctagg
ctcgaaagtccctttgtggaatggtgccagagaaaccaagataagtttct
cagttgtcaacccatctcttccgtggtagatcaaataagaatagttctca
taagctcatatatgtttgggcattagggagtgacactacttgagaaggat
tgggaggcgtggtcttgttggaggaaatgtgtcactgagggtggccttga
ggttttaaattttcaagccaggtctagtctctctctctctctctctctct
ctctctctcactctctctc
ctgatagccatttttctagttttcttgtttttgtgatgtcgttaaatccg
ctaaaaccaaatccgttcttgttgtcgaggcgtgtggacgcgtgttttgt
ggcatagtggatttgtgctggaaaggaattgtccttgtcaccatagccgt
tggctaacatttgctcgttcgctcatcacgaagtcctgtgttcctgccag
ttctttgttagttgttctatcagttgttggagtgagcatggcctgctttg
gtgccatgtgactgtgactgggtttgcctgttagttctaagtatggtcag
attttcctttaatattctgaagccgtagttgaggttcatacaagctggtt
tgtgtttctggataatggacccagtttttcttggacttatgaaggtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118794336_118795054
seq2: B6Ng01-157E04.b_47_765

seq1  GAATTCCATCTTGCACATTGTGCCTTTGATTAGGAAAGGGAACTGGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTGCACATTGTGCCTTTGATTAGGAAAGGGAACTGGACTG  50

seq1  GAAGACGGGAAGCATGGAATTTACCCTTTACTGTTTGTTGCCTAACCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACGGGAAGCATGGAATTTACCCTTTACTGTTTGTTGCCTAACCATG  100

seq1  TGACCTTCTAGAAACTGTAAAAGGGACCAAAACGTAGCGTCGTGCAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCTAGAAACTGTAAAAGGGACCAAAACGTAGCGTCGTGCAAGCT  150

seq1  ACAGCCAATCTTCCCAAGGAAGAAGAGATGTCTACTCCATTTCTTCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAATCTTCCCAAGGAAGAAGAGATGTCTACTCCATTTCTTCTCAA  200

seq1  TTTTTGCTTGTGACTCTCTAAGATCAAAGGTTTAGAGAGGTTTGAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTGTGACTCTCTAAGATCAAAGGTTTAGAGAGGTTTGAGGCAG  250

seq1  CTAGGCCCTCAGAGGCCCTAGTCTCTTGTTCTAGAGTGAAATCCAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCCTCAGAGGCCCTAGTCTCTTGTTCTAGAGTGAAATCCAAAGCA  300

seq1  AGAGAGCAGGAAAAAATTTAATCTTCCCACTAGTATGATTACATGGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAGGAAAAAATTTAATCTTCCCACTAGTATGATTACATGGACAT  350

seq1  TTTAGAGTTTATACAACAGGCACCTGTGTATCAGACCAACCTGCAGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTTTATACAACAGGCACCTGTGTATCAGACCAACCTGCAGGCTT  400

seq1  AGGTAGATCCTGTGTTCTTGATAATTGTGCTACCTGCATCTCGTCCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATCCTGTGTTCTTGATAATTGTGCTACCTGCATCTCGTCCTAGG  450

seq1  CTCGAAAGTCCCTTTGTGGAATGGTGCCAGAGAAACCAAGATAAGTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAAGTCCCTTTGTGGAATGGTGCCAGAGAAACCAAGATAAGTTTCT  500

seq1  CAGTTGTCAACCCATCTCTTCCGTGGTAGATCAAATAAGAATAGTTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTCAACCCATCTCTTCCGTGGTAGATCAAATAAGAATAGTTCTCA  550

seq1  TAAGCTCATATATGTTTGGGCATTAGGGAGTGACACTACTTGAGAAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCATATATGTTTGGGCATTAGGGAGTGACACTACTTGAGAAGGAT  600

seq1  TGGGAGGCGTGGTCTTGTTGGAGGAAATGTGTCACTGAGGGTGGCCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCGTGGTCTTGTTGGAGGAAATGTGTCACTGAGGGTGGCCTTGA  650

seq1  GGTTTTAAATTTTCAAGCCAGGTCTAGTCTCTCTCTCTCTCTCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAAATTTTCAAGCCAGGTCTAGTCTCTCTCTCTCTCTCTCTCTCT  700

seq1  CTCTCTCTCACTCTCTCTC  719
      |||||||||||||||||||
seq2  CTCTCTCTCACTCTCTCTC  719

seq1: chr14_118936302_118936732
seq2: B6Ng01-157E04.g_66_496 (reverse)

seq1  CACACACACACACACACACACACACACACACCTTCATAAGTCCAAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACCTTCATAAGTCCAAGAAAA  50

seq1  ACTGGGTCCATTATCCAGAAACACAAACCAGCTTGTATGAACCTCAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCCATTATCCAGAAACACAAACCAGCTTGTATGAACCTCAACTA  100

seq1  CGGCTTCAGAATATTAAAGGAAAATCTGACCATACTTAGAACTAACAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTCAGAATATTAAAGGAAAATCTGACCATACTTAGAACTAACAGGC  150

seq1  AAACCCAGTCACAGTCACATGGCACCAAAGCAGGCCATGCTCACTCCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGTCACAGTCACATGGCACCAAAGCAGGCCATGCTCACTCCAAC  200

seq1  AACTGATAGAACAACTAACAAAGAACTGGCAGGAACACAGGACTTCGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATAGAACAACTAACAAAGAACTGGCAGGAACACAGGACTTCGTGA  250

seq1  TGAGCGAACGAGCAAATGTTAGCCAACGGCTATGGTGACAAGGACAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGAACGAGCAAATGTTAGCCAACGGCTATGGTGACAAGGACAATTC  300

seq1  CTTTCCAGCACAAATCCACTATGCCACAAAACACGCGTCCACACGCCTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGCACAAATCCACTATGCCACAAAACACGCGTCCACACGCCTCG  350

seq1  ACAACAAGAACGGATTTGGTTTTAGCGGATTTAACGACATCACAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGAACGGATTTGGTTTTAGCGGATTTAACGACATCACAAAAACA  400

seq1  AGAAAACTAGAAAAATGGCTATCAGGAATTC  431
      |||||||||||||||||||||||||||||||
seq2  AGAAAACTAGAAAAATGGCTATCAGGAATTC  431