BAC Information

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BAC

Clone NameB6Ng01-158E21
Chromosome14 (Build37)
Map Location 3,329,352 - 3,542,536
singlet/doubletdoublet
Overlap geneLOC100040767, LOC100040779, LOC100038846, EG666890
Upstream geneLOC100040452, LOC100040657, LOC100040671, LOC100040682, LOC100040697, LOC544990, D830030K20Rik, LOC236565, LOC100040740, LOC100040755
Downstream geneLOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158E21.bB6Ng01-158E21.g
ACCDH952291DH952292
length1,0871,131
definitionDH952291|Mus musculus domesticus DNA, BAC clone: B6Ng01-158E21, 5' end.DH952292|Mus musculus domesticus DNA, BAC clone: B6Ng01-158E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,329,352 - 3,330,450)(3,541,386 - 3,542,536)
sequence
gaattctgtagacattgaaattttgatgtaggcataggaggaaataaaaa
tacaagactcagaggcctttggtgaaagaaattgaaaagcacattctcag
acacacacacagacacacacagacacacacacacacacagatatacacac
acacacagagacacacacacacacacagagacacacacacacacagacac
cagtgtctagagttctgtgaagcaatgcccctccctgccttttttgtctc
ccacaggagacgctatatcacttccctcctctgtaaaaagcacattctca
gacacacacatacacacacacacagagacacacagacacacacacagaga
cacacacacacagagagacacacacacatgcagacacacacacagacaca
cacagacacacacatagacacagacacagacacacacacacacacacaca
cacaccactgtctgtagaggtctgtgaagcaatgctcctccttgcttttt
tttgtctcccaccccaaactctgtatcacttccctcctctgtatgagggc
aaagcctcaggaggtggatggtaatgtggaacagaggacacaccccacaa
tctcctaaagtgtactgttccctgagaaggaaataaggtgagggggaggg
gcggtggcagcaaggcttttctagagccctttagtctgattaatacacac
aatgaatgaaaacagtcatgctaaaagtagtgctcttaggatggtctggt
agtagtgagatcaaacccgtatttttaggacatccttaaaacacaatgac
ttggaagagttgaaaaacagaactagttatactgtgcattcaggagcaaa
gagaacacttttattatacaggacagaatttaatgttataagacaatgga
gatggtattctgtttcttgctttatgttttgaattgttttatgtgagtgt
gtgcctgctgtctatctgggcacatgtcatgcagtacctgaggcaggaga
gggtattggatcttggaactggtgttacagtagctgtgagctgcctagtg
gtactggacactgaacgtggtctcaggaaagacactg
gaattctcccgagttctagtaaaggtgagaacaaacacttagacatgagg
agaatattagatctttgggatttgttagtattcctgctgtttctactaat
tttagtttgaactctcccagctatttgcactggacccagaaaattaagcc
catactctgtacagtcctatcattcatgtatttattgtaatcaacacagt
catcaatagtaaactaagtatattggttcatggttatagtctactctact
aaaataaatgattttgactgattaacaatttctagtgactgtgtgagtac
aggaacacataagaagatatttaactgagaattagtaagtagttgcccct
ttttcttcatccatacatagtaatatgtaaagacagagttattttgaaaa
caagacctctgggggaaaaaaaacattccacgagcacatattcagcaaaa
gtttaaagtacaaacctgaacagaattatgacaatgacatctggtcccta
ctcttagatcagtctgctgacgagactttgaaggagattcaacatgagcc
tagggaatcacagtttgtgcatcttcaggaagtcatttcaaaagatttca
cagtaaaagtgaagtgcttaagaaagcatgaaaatattgtttccccaagg
aagaaatcctacctcacttctctaaggaaaaagcaagattaaaggtaatt
ctaattttaaaatcagtatatgtcatttgagtgcaaagatgcatctgtgg
gcccacatctgcagagcttaagaatgtctagacaacaggatctcagcatt
gaacatgtcctgcatcttcttcacacactcagtcccagctgcatccttgt
ccttgatcattaaagctataaggatacagtgtaaaattccgggatcctgt
gaccctgagattctgggtgtgtcgcagttcctgggagacagtgcctgtga
gactctaagatcttgtgtgactaactcctgggatctgggatctgggatct
agatctggtcatgatagatgatgtgtgagtgagcttcttcttgggctgtg
ggactgtcctctggttgtaccagtagacagtgctagagtaacctatgcag
aaaatgatgccgaacagtcctggaccaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_3329352_3330450
seq2: B6Ng01-158E21.b_47_1133

seq1  GAATTCTGTAGACATTGAAATTTTGATGTAGGCATAGGAGGAAATAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGACATTGAAATTTTGATGTAGGCATAGGAGGAAATAAAAA  50

seq1  TACAAGACTCAGAGGCCTTTGGTGAAAGAAATTGAAAAGCACATTCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGACTCAGAGGCCTTTGGTGAAAGAAATTGAAAAGCACATTCTCAG  100

seq1  ACACACACACAGACACACACAGACACACACACACACACAGATATACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGACACACACAGACACACACACACACACAGATATACACAC  150

seq1  ACACACAGAGACACACACACACACACAGAGACACACACACACACAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGAGACACACACACACACACAGAGACACACACACACACAGACAC  200

seq1  CAGTGTCTAGAGTTCTGTGAAGCAATGCCCCTCCCTGCCTTTTTTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTAGAGTTCTGTGAAGCAATGCCCCTCCCTGCCTTTTTTGTCTC  250

seq1  CCACAGGAGACGCTATATCACTTCCCTCCTCTGTAAAAAGCACATTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAGACGCTATATCACTTCCCTCCTCTGTAAAAAGCACATTCTCA  300

seq1  GACACACACATACACACACACACAGAGACACACAGACACACACACAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACATACACACACACACAGAGACACACAGACACACACACAGAGA  350

seq1  CACACACACACAGAGAGACACACACACATGCAGACACACACACAGACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGAGAGACACACACACATGCAGACACACACACAGACACA  400

seq1  CACAGACACACACATAGACACAGACACAGACACACACACACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACACACATAGACACAGACACAGACACACACACACACACACACA  450

seq1  CACACCACTGTCTGTAGAGGTCTGTGAAGCAATGCTCCTCCTTGCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACTGTCTGTAGAGGTCTGTGAAGCAATGCTCCTCCTTGCTTTTT  500

seq1  TTTGTCTCCCACCCCAAACTCTGTATCACTTCCCTCCTCTGTATGAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCCCACCCCAAACTCTGTATCACTTCCCTCCTCTGTATGAGGGC  550

seq1  AAAGCCTCAGGAGGTGGATGGTAATGTGGAACAGAGGACACACCCCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCAGGAGGTGGATGGTAATGTGGAACAGAGGACACACCCCACAA  600

seq1  TCTCCTAAAGTGTACTGTTCCCTGAGAAGGAAATAAGGTGAGGGGGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAAGTGTACTGTTCCCTGAGAAGGAAATAAGGTGAGGGGGAGGG  650

seq1  GCGGTGGCAGCAAGGCTTTCCTAGAGCCCTTTAGTCTGATTAATACACAC  700
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCGGTGGCAGCAAGGCTTTTCTAGAGCCCTTTAGTCTGATTAATACACAC  700

seq1  AATGAATGAAAACAGTCATGCTAAAAGTAGTGCTCTTAGGATGGTCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAAAACAGTCATGCTAAAAGTAGTGCTCTTAGGATGGTCTGGT  750

seq1  AGTAGTGAGATCAAA-CCGTATTTTTAGGACATCCTTAAAACACAATGAC  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTAGTGAGATCAAACCCGTATTTTTAGGACATCCTTAAAACACAATGAC  800

seq1  TTGGAAGAGTTGAAAAACAGAACTAGTTATACTGTGCATTCAGGAGCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAGTTGAAAAACAGAACTAGTTATACTGTGCATTCAGGAGCAAA  850

seq1  GAGAACACTTTTATTATACAGGACAGAATTTAATGTTATAAGACAATGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACTTTTATTATACAGGACAGAATTTAATGTTATAAGACAATGGA  900

seq1  GATGGTATTCTGTTTCTTGCTTTATGTTTTGAATTGTTTTATGTGAGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTATTCTGTTTCTTGCTTTATGTTTTGAATTGTTTTATGTGAGTGT  950

seq1  GTGCCTGCCTGTCTATCTGGGCACCATGTTCATGCAGGTACCTGAGGCCA  999
      ||||||| ||||||||||||||| |||| ||||||| |||||||||| ||
seq2  GTGCCTG-CTGTCTATCTGGGCA-CATG-TCATGCA-GTACCTGAGG-CA  995

seq1  GAAGAGGGTATTGGATCTTTTGGAACTGGTGTTACAGGTAGCTGTGAGCT  1049
      | |||||||||||||||  ||||||||||||||||| |||||||||||||
seq2  GGAGAGGGTATTGGATC--TTGGAACTGGTGTTACA-GTAGCTGTGAGCT  1042

seq1  GCCCAAGGTGGGTACTGGACACTGAACGTGGGTCCTCAGGAAGAACACTG  1099
      ||| |  || |||||||||||||||||||||   ||||||||  ||||||
seq2  GCCTA--GT-GGTACTGGACACTGAACGTGG--TCTCAGGAAAGACACTG  1087

seq1: chr14_3541386_3542536
seq2: B6Ng01-158E21.g_69_1199 (reverse)

seq1  CACCTGTCCCAGGACTGCTC-GCATCATTTCTTGCATATGTTTACTCTAG  49
      ||||||  ||||||||| || |||||||||  |||||| | |||||||||
seq2  CACCTGGTCCAGGACTGTTCGGCATCATTTTCTGCATA-GGTTACTCTAG  49

seq1  CACTTGTCTACCTTGGGTACAAACCCAGAGGACAGTCCCACAGCCCAAAG  99
      ||| |||||||    |||||||  |||||||||||||||||||||| |||
seq2  CAC-TGTCTAC---TGGTACAA--CCAGAGGACAGTCCCACAGCCC-AAG  92

seq1  AAGAGGCTCCACTCCACACACTCACTCTATCATGACCAGGATCTTAGAAT  149
      |||| ||| |||| |||||| ||| ||||||||||||| |||| ||| ||
seq2  AAGAAGCT-CACT-CACACA-TCA-TCTATCATGACCA-GATC-TAG-AT  135

seq1  CCCAGGATCCCAGAATCCCAGGAGTTAGTCACACAAGAATCTTAGAGTCT  199
      |||| |||||||| ||||||||||||||||||||||| ||||||||||||
seq2  CCCA-GATCCCAG-ATCCCAGGAGTTAGTCACACAAG-ATCTTAGAGTCT  182

seq1  CACAGGCAACTTGTCTCCCAGGAACTGCGACACACCCAGAATCTCAGGGT  249
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCA--CTGTCTCCCAGGAACTGCGACACACCCAGAATCTCAGGGT  230

seq1  CACAGGATCCCGGAATTTTACACCTGTATCCTTATAGCTTTAATGATCAA  299
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACAGGATCCCGGAATTTTACA-CTGTATCCTTATAGCTTTAATGATCAA  279

seq1  GGACAAGGATGCAGCTGGGACTGAGTGTGTGAAGAAGATGCAGGACATGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGGATGCAGCTGGGACTGAGTGTGTGAAGAAGATGCAGGACATGT  329

seq1  TCAATGCTGAGATCCTGTTGTCTAGACATTCTTAAGCTCTGCAGATGTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTGAGATCCTGTTGTCTAGACATTCTTAAGCTCTGCAGATGTGG  379

seq1  GCCCACAGATGCATCTTTGCACTCAAATGACATATACTGATTTTAAAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGATGCATCTTTGCACTCAAATGACATATACTGATTTTAAAATT  429

seq1  AGAATTACCTTTAATCTTGCTTTTTCCTTAGAGAAGTGAGGTAGGATTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACCTTTAATCTTGCTTTTTCCTTAGAGAAGTGAGGTAGGATTTC  479

seq1  TTCCTTGGGGAAACAATATTTTCATGCTTTCTTAAGCACTTCACTTTTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGGGAAACAATATTTTCATGCTTTCTTAAGCACTTCACTTTTAC  529

seq1  TGTGAAATCTTTTGAAATGACTTCCTGAAGATGCACAAACTGTGATTCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATCTTTTGAAATGACTTCCTGAAGATGCACAAACTGTGATTCCC  579

seq1  TAGGCTCATGTTGAATCTCCTTCAAAGTCTCGTCAGCAGACTGATCTAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCATGTTGAATCTCCTTCAAAGTCTCGTCAGCAGACTGATCTAAG  629

seq1  AGTAGGGACCAGATGTCATTGTCATAATTCTGTTCAGGTTTGTACTTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGACCAGATGTCATTGTCATAATTCTGTTCAGGTTTGTACTTTAA  679

seq1  ACTTTTGCTGAATATGTGCTCGTGGAATGTTTTTTTTCCCCCAGAGGTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGCTGAATATGTGCTCGTGGAATGTTTTTTTTCCCCCAGAGGTCT  729

seq1  TGTTTTCAAAATAACTCTGTCTTTACATATTACTATGTATGGATGAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAAAATAACTCTGTCTTTACATATTACTATGTATGGATGAAGAA  779

seq1  AAAGGGGCAACTACTTACTAATTCTCAGTTAAATATCTTCTTATGTGTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCAACTACTTACTAATTCTCAGTTAAATATCTTCTTATGTGTTC  829

seq1  CTGTACTCACACAGTCACTAGAAATTGTTAATCAGTCAAAATCATTTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTCACACAGTCACTAGAAATTGTTAATCAGTCAAAATCATTTATT  879

seq1  TTAGTAGAGTAGACTATAACCATGAACCAATATACTTAGTTTACTATTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGAGTAGACTATAACCATGAACCAATATACTTAGTTTACTATTGA  929

seq1  TGACTGTGTTGATTACAATAAATACATGAATGATAGGACTGTACAGAGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGTTGATTACAATAAATACATGAATGATAGGACTGTACAGAGTA  979

seq1  TGGGCTTAATTTTCTGGGTCCAGTGCAAATAGCTGGGAGAGTTCAAACTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTAATTTTCTGGGTCCAGTGCAAATAGCTGGGAGAGTTCAAACTA  1029

seq1  AAATTAGTAGAAACAGCAGGAATACTAACAAATCCCAAAGATCTAATATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTAGAAACAGCAGGAATACTAACAAATCCCAAAGATCTAATATT  1079

seq1  CTCCTCATGTCTAAGTGTTTGTTCTCACCTTTACTAGAACTCGGGAGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATGTCTAAGTGTTTGTTCTCACCTTTACTAGAACTCGGGAGAAT  1129

seq1  TC  1151
      ||
seq2  TC  1131