BAC Information

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BAC

Clone NameB6Ng01-158I16
Chromosome14 (Build37)
Map Location 47,891,555 - 48,019,010
singlet/doubletdoublet
Overlap geneWdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7
Upstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1
Downstream geneLOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158I16.bB6Ng01-158I16.g
ACCDH952462DH952463
length1,179437
definitionDH952462|Mus musculus domesticus DNA, BAC clone: B6Ng01-158I16, 5' end.DH952463|Mus musculus domesticus DNA, BAC clone: B6Ng01-158I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,017,819 - 48,019,010)(47,891,555 - 47,891,997)
sequence
gaattcctgtcctatgctgggcattgtagttagagatgactgaaaggcag
agtcaagcagggcgtggtggcacacatggtgccaaatcccagcttgaggc
cagcctggtctacacttgcagacagccagggccacacagaggaacataga
atctgactccgtcttacagcatccatactcaagtgggccacgcagtcaca
cacatataacatatacacgtaagataaaatcagtctggaaggaaggaaaa
cagagcaagcagtcagttgtgtgtggcagcatacacctttagtcccctca
ccccgggaaactaagtctatagaagttgcattcagaattcagaattatta
acaatattcaggtgctttctactgtagagaaggatatacataggttacgt
gcaaatgccagggaatctcatgctctctggtgtgtgtgtgagttgctgag
gacctgacttggggctttccctgtgccaggcaggcacttgaacacacaat
ttacagtgacttaaacagcatctgggaggtggaggctgcaagattgggag
ttccaagtattttcttggacaatatagcaagttgtgggttttcctgggtt
catgtgagtctcctctctctctccctctccctctccctcctccaactccc
gacaccaccaccaccactctacacataaatccccatacacaggcctttaa
gtttaataactaaccagttctggatcaccattttctgtttatttgacatg
gtcattcattttagagtcctaaagtagcaattttgacatagcactaattg
cacaaactcgggcttttatcaccaggtcgatgatgtgaaccagaaattca
acaacctgatcaaacttgaggcgtcaggatggaaagacagcaataatcca
agcaaaaaagtcctccgggtaggtttgtgcatccctagcacagattctgc
tttggtttgtttctaagaatgtcgttatttacgtgggtgggtgcttgtgc
cgtgaggggcagcagtggagggcaaaggcaagctgaaggcattggctctt
accttctgttaagaaatctgacgcttcacagaactgaattctaaaatgct
atacattctggaatgcgctggggcaaggacaagaatatacttcacacaaa
ttaagacagtgttctttaagagaaaagtc
tgtagtgctgggcatggtggcgcacgcctttaatcccagcactcaggagg
cagaggcaggcggatttctgagttcgagggcagcctggtctacagagtga
gttccaggacagccggggctatacagagaaaccctgtctcaaaaaaaaaa
aatatattgaaaagatccatcctttcacttttatgaaagtggtagagccg
tcttgccagctcacatctcaacttaaggctgaaaactaagcactacttac
cttcccggccttgggctgccacgcgagtctgcagatggacttggcgttca
ccacgtcattgctcttttgcagtactggccaactgacagcacaggtctga
tttcaaaacatgaaaattgacttctctttatcaaaaattcctctcaaaat
agatacaaagctgaggtttaacggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48017819_48019010
seq2: B6Ng01-158I16.b_45_1223 (reverse)

seq1  GACTTTCTTCTCTTTGGAAGGACAC-GTCTTACATTTTGTGTTGAGTATA  49
      |||||  |||||||   ||| |||| |||||  | |||||||  ||||||
seq2  GACTT--TTCTCTT--AAAGAACACTGTCTT--AATTTGTGTGAAGTATA  44

seq1  TCCTTGCTCCCTTGCCCCCACGGCAAT-CAGAATGTAATAAGCAATATAT  98
      | ||||   ||||| |||||  ||| | |||||||||   |||| | || 
seq2  TTCTTG--TCCTTG-CCCCAGCGCATTCCAGAATGTA--TAGCATTTTA-  88

seq1  GAATTCAG-TCTGTGAAGCGTCAGAGTTTCTGTAACAGAAGTGAAGAGCC  147
      |||||||| |||||||||||||||| ||||| |||||||||  |||||||
seq2  GAATTCAGTTCTGTGAAGCGTCAGA-TTTCT-TAACAGAAGGTAAGAGCC  136

seq1  AATGCCTCCAGCTTGCCCTCTGCCCCTCACCTGCTGCCCCTCACGGCACA  197
      ||||||| ||||||| ||| || |||||  ||||||||||||||||||||
seq2  AATGCCTTCAGCTTG-CCTTTG-CCCTCCACTGCTGCCCCTCACGGCACA  184

seq1  AGCACCCACCCACGTAAATAACGACATTCTTAGAAACAAACCAGAGCAGA  247
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCACCCACCCACGTAAATAACGACATTCTTAGAAACAAACCAAAGCAGA  234

seq1  ATCTGTGCTAGGGATGCACAAACCTACCCGGAGGACTTTTTTGCTTGGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCTAGGGATGCACAAACCTACCCGGAGGACTTTTTTGCTTGGAT  284

seq1  TATTGCTGTCTTTCCATCCTGACGCCTCAAGTTTGATCAGGTTGTTGAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGTCTTTCCATCCTGACGCCTCAAGTTTGATCAGGTTGTTGAAT  334

seq1  TTCTGGTTCACATCATCGACCTGGTGATAAAAGCCCGAGTTTGTGCAATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTCACATCATCGACCTGGTGATAAAAGCCCGAGTTTGTGCAATT  384

seq1  AGTGCTATGTCAAAATTGCTACTTTAGGACTCTAAAATGAATGACCATGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTATGTCAAAATTGCTACTTTAGGACTCTAAAATGAATGACCATGT  434

seq1  CAAATAAACAGAAAATGGTGATCCAGAACTGGTTAGTTATTAAACTTAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAACAGAAAATGGTGATCCAGAACTGGTTAGTTATTAAACTTAAA  484

seq1  GGCCTGTGTATGGGGATTTATGTGTAGAGTGGTGGTGGTGGTGTCGGGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGTATGGGGATTTATGTGTAGAGTGGTGGTGGTGGTGTCGGGAG  534

seq1  TTGGAGGAGGGAGAGGGAGAGGGAGAGAGAGAGGAGACTCACATGAACCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAGGGAGAGGGAGAGGGAGAGAGAGAGGAGACTCACATGAACCC  584

seq1  AGGAAAACCCACAACTTGCTATATTGTCCAAGAAAATACTTGGAACTCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACCCACAACTTGCTATATTGTCCAAGAAAATACTTGGAACTCCC  634

seq1  AATCTTGCAGCCTCCACCTCCCAGATGCTGTTTAAGTCACTGTAAATTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGCAGCCTCCACCTCCCAGATGCTGTTTAAGTCACTGTAAATTGT  684

seq1  GTGTTCAAGTGCCTGCCTGGCACAGGGAAAGCCCCAAGTCAGGTCCTCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAAGTGCCTGCCTGGCACAGGGAAAGCCCCAAGTCAGGTCCTCAG  734

seq1  CAACTCACACACACACCAGAGAGCATGAGATTCCCTGGCATTTGCACGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCACACACACACCAGAGAGCATGAGATTCCCTGGCATTTGCACGTA  784

seq1  ACCTATGTATATCCTTCTCTACAGTAGAAAGCACCTGAATATTGTTAATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGTATATCCTTCTCTACAGTAGAAAGCACCTGAATATTGTTAATA  834

seq1  ATTCTGAATTCTGAATGCAACTTCTATAGACTTAGTTTCCCGGGGTGAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAATTCTGAATGCAACTTCTATAGACTTAGTTTCCCGGGGTGAGG  884

seq1  GGACTAAAGGTGTATGCTGCCACACACAACTGACTGCTTGCTCTGTTTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAAAGGTGTATGCTGCCACACACAACTGACTGCTTGCTCTGTTTTC  934

seq1  CTTCCTTCCAGACTGATTTTATCTTACGTGTATATGTTATATGTGTGTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCAGACTGATTTTATCTTACGTGTATATGTTATATGTGTGTGA  984

seq1  CTGCGTGGCCCACTTGAGTATGGATGCTGTAAGACGGAGTCAGATTCTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGGCCCACTTGAGTATGGATGCTGTAAGACGGAGTCAGATTCTAT  1034

seq1  GTTCCTCTGTGTGGCCCTGGCTGTCTGCAAGTGTAGACCAGGCTGGCCTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTGTGTGGCCCTGGCTGTCTGCAAGTGTAGACCAGGCTGGCCTC  1084

seq1  AAGCTGGGATTTGGCACCATGTGTGCCACCACGCCCTGCTTGACTCTGCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGATTTGGCACCATGTGTGCCACCACGCCCTGCTTGACTCTGCC  1134

seq1  TTTCAGTCATCTCTAACTACAATGCCCAGCATAGGACAGGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCATCTCTAACTACAATGCCCAGCATAGGACAGGAATTC  1179

seq1: chr14_47891555_47891997
seq2: B6Ng01-158I16.g_70_512

seq1  GAATTCTGTAGTGCTGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGTGCTGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTC  50

seq1  AGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGGCAGCCTGGTCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGGCAGCCTGGTCTACA  100

seq1  GAGTGAGTTCCAGGACAGCCGGGGCTATACAGAGAAACCCTGTCTCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTCCAGGACAGCCGGGGCTATACAGAGAAACCCTGTCTCAAAA  150

seq1  AAAAAAAATATATTGAAAAGATCCATCCTTTCACTTTTATGAAAGTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATATATTGAAAAGATCCATCCTTTCACTTTTATGAAAGTGGTA  200

seq1  GAGCCGTCTTGCCAGCTCACATCTCAACTTAAGGCTGAAAACTAAGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGTCTTGCCAGCTCACATCTCAACTTAAGGCTGAAAACTAAGCACT  250

seq1  ACTTACCTTCCCGGCCTTGGGCTGCCACGCGAGTCTGCAGATGGACTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCTTCCCGGCCTTGGGCTGCCACGCGAGTCTGCAGATGGACTTGG  300

seq1  CGTTCACCACGTCATTGCTCTTTTGCAGTACTGGCCAACTGACAGCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCACCACGTCATTGCTCTTTTGCAGTACTGGCCAACTGACAGCACAG  350

seq1  GTCTGATTTCAAAACATGAAAATTGACTTCTCTTTATCAAAAATTCCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTTCAAAACATGAAAATTGACTTCTCTTTATCAAAAATTCCTCT  400

seq1  CAAAATAGATACAAAGCTGAGGTTTAACGGGGGGGGGGGGGGG  443
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGATACAAAGCTGAGGTTTAACGGGGGGGGGGGGGGG  443