BAC Information

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BAC

Clone NameB6Ng01-158L16
Chromosome14 (Build37)4 (Build37)
Map Location 84,829,211 - 84,829,64350,049,053 - 50,050,239
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream genePcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158L16.bB6Ng01-158L16.g
ACCDH952602DH952603
length9721,145
definitionDH952602|Mus musculus domesticus DNA, BAC clone: B6Ng01-158L16, 5' end.DH952603|Mus musculus domesticus DNA, BAC clone: B6Ng01-158L16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,829,211 - 84,829,643)(50,049,053 - 50,050,239)
sequence
gaattctgtaggctttttgtatgtttatgggcatctctttctttatgtta
gggaagttttcttctataattttgttgaagatatttgctggccctttaag
ttgaaaatcttcattctcatctatacgtattatcctattggtcttctcat
tgtgtcctgaacttcctggatgtttgagttaggatctttttgcattttgt
attttcttttattgttgtgtccatgttctctgtgtaatcttctgcaccta
agattctctcttccatctcttgcattctattggtgatgcttgcatctatg
gttcctcttcccaccccacccccctaggatttctacgtccagagttgtct
ccctttgggttttcattattgtttctacttacatttttagatcttggatg
gttttgttcaaatccatcacctatttggttgtgttttcctgtaattcttt
gagggacttttgtgctttctctttaaggacttctacctgtttagcagtgt
tctcctttatttctttaagtgagttattaatgcccttcttaaaatactct
accagcaacatgagatataattttaaatccaaatcttgctttttgggtgt
gttgggggtatccaggactcactgtggtgggagtactggaatctgatgat
acctagtggtcttggtttgtgttagtatgtttacatttcaccatctggtt
atctctggtgttagatattctagctgtctcttgttggagcttgttcctcc
tgtgattctgttagcctgtcagcactcctgggagtccaactctctcctga
gtcccagtggtcagagcagtctctgcattcaagctctggtcttgtaggga
atgtgcaccgaggtctggagctcagtttcacctcctggctgaaaattgag
acccgaagtgaccttgtccaagaagctttgtgttctgttgcccgtgtgtg
ctctctgtgtggctggtccctg
gaattcttgggcacatggagatgttgaattaagctgacacaacggcatga
gtcttgcaagcttctttgattgcacttgaaacactggccaccgggggcca
ctgttagaataactgagggaagaggcagcttgaaagcaccagaagttgag
agccactgggttaaaaacggttaaagcagggttagggaaggaggaatgtt
agggaagttttcagtgctacagaagtactgtaggacagaaagttagcact
gaaatatagagtatccgaccaccatggtaaatgaggtcggcaaatcctcc
ataacctagttagcttgagtgtagttgaagttgactcgccgtggagtcag
agaaactgcaatgttcatgttacagcattgatttttaaagcccaaagctg
cctgagtgaggttgagattactccttcaggtgatgccgaaagcgagcgtg
atggatgaacagaaatctgggttagcctgggttttcacaagctgggtgcc
ctcctgggagcaggatggggggaaagaatccaccgctcttagagctagga
agggcagctctgtgtaggatgtagagagttctcatgagtaaagagcataa
gaactaggaaagaagtaaaggatctataactggccaggcaaggatttgtg
acagggactaagtctgaaggaggaactatttcaaggcagtgagctctaat
tgaggtaagtttatattcatcaaaatagaagtcgggctcagtgggattta
ttattgtttaccggtgcatctctttcagctagaaagacttaagttactgt
taatttcaaagatgggaagagaaagaccaaatggtcaaattaattaaagc
aaacaattaattaagcaagcttttttattcttatacacgggctccttcct
cctatagtggggttcaagaggtcagtcagcattggacatggggaactttt
tagttcagagtatgaaatttcagaggaaatttggtagcaatagtggttac
gagcagaatatacagtagtcatagtagtggtatatacttttgaaaccagc
atatctgttcttattgtagtcaggtgtaggtgggccatgttcatagctta
aacaggcagatcagttgatctactaagaggctttcaagtccaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84829211_84829643
seq2: B6Ng01-158L16.b_49_483 (reverse)

seq1  GAAAACACATCCAAACAGGTGATGGAAATGAACAAAAGAATACTAGAACT  50
      ||||||||| ||||| ||||||||||  |||||||||  || | ||| ||
seq2  GAAAACACAACCAAATAGGTGATGGATTTGAACAAAACCATCCAAGATCT  50

seq1  AAAAGGGGAAGTAGACACAATTAAGAAAACCCAAAGCGAGGCAATGCTAG  100
      ||||  | ||||||| ||||| | |||||||||||| ||| |||  || |
seq2  AAAAATGTAAGTAGAAACAATAATGAAAACCCAAAGGGAGACAACTCTGG  100

seq1  AGATAGAAACCCTA-------GGAAAGAGATCTGGAACCACAGATGCGAG  143
      |  |||||| ||||       ||   | ||   ||||||| |||||| ||
seq2  ACGTAGAAATCCTAGGGGGGTGGGGTGGGAAGAGGAACCATAGATGCAAG  150

seq1  CATCAGCAACAGAATACAAGAAATGGAAGAGAGAATCTCAGGTGCAGAAG  193
      ||||| ||| ||||| ||||| |||||||||||||||| |||||||||||
seq2  CATCACCAATAGAATGCAAGAGATGGAAGAGAGAATCTTAGGTGCAGAAG  200

seq1  ATTCCATAGAGAACATCGACACAACAGTCAAAGAAAATACAAAATGCAAA  243
      ||| || ||||||||| ||||||||| | |||||||||||||||||||||
seq2  ATTACACAGAGAACATGGACACAACAATAAAAGAAAATACAAAATGCAAA  250

seq1  AGGATCCTAACTCAAAACATCCAGGTAATCCAGGACACAATGAGAAGACC  293
      | ||||||||||| ||||||||||| | | ||||||||||||||||||||
seq2  AAGATCCTAACTC-AAACATCCAGGAAGTTCAGGACACAATGAGAAGACC  299

seq1  AAACCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAG  343
      ||   || |||||||| | || ||||||||||||||||||||||||||||
seq2  AA---TA-GGATAATACGTATAGATGAGAATGAAGATTTTCAACTTAAAG  345

seq1  GGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATA  393
      ||||||| ||||||||||||||||| ||||||||||||||||| ||||||
seq2  GGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAACTTCCCTAACATA  395

seq1  AAGAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAA  433
      ||||||||||||||||| | ||||||| ||||||||||||
seq2  AAGAAAGAGATGCCCATAAACATACAAAAAGCCTACAGAA  435

seq1: chr4_50049053_50050239
seq2: B6Ng01-158L16.g_68_1212

seq1  GAATTCTTGGGCACATGGAGATGTTGAATTAAGCTGACACAACGGCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGCACATGGAGATGTTGAATTAAGCTGACACAACGGCATGA  50

seq1  GTCTTGCAAGCTTCTTTGATTGCACTTGAAACACTGGCCACCGGGGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCAAGCTTCTTTGATTGCACTTGAAACACTGGCCACCGGGGGCCA  100

seq1  CTGTTAGAATAACTGAGGGAAGAGGCAGCTTGAAAGCACCAGAAGTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGAATAACTGAGGGAAGAGGCAGCTTGAAAGCACCAGAAGTTGAG  150

seq1  AGCCACTGGGTTAAAAACGGTTAAAGCAGGGTTAGGGAAGGAGGAATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGGGTTAAAAACGGTTAAAGCAGGGTTAGGGAAGGAGGAATGTT  200

seq1  AGGGAAGTTTTCAGTGCTACAGAAGTACTGTAGGACAGAAAGTTAGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTTTTCAGTGCTACAGAAGTACTGTAGGACAGAAAGTTAGCACT  250

seq1  GAAATATAGAGTATCCGACCACCATGGTAAATGAGGTCGGCAAATCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAGAGTATCCGACCACCATGGTAAATGAGGTCGGCAAATCCTCC  300

seq1  ATAACCTAGTTAGCTTGAGTGTAGTTGAAGTTGACTCGCCGTGGAGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTAGTTAGCTTGAGTGTAGTTGAAGTTGACTCGCCGTGGAGTCAG  350

seq1  AGAAACTGCAATGTTCATGTTACAGCATTGATTTTTAAAGCCCAAAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGCAATGTTCATGTTACAGCATTGATTTTTAAAGCCCAAAGCTG  400

seq1  CCTGAGTGAGGTTGAGATTACTCCTTCAGGTGATGCCGAAAGCGAGCGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGAGGTTGAGATTACTCCTTCAGGTGATGCCGAAAGCGAGCGTG  450

seq1  ATGGATGAACAGAAATCTGGGTTAGCCTGGGTTTTCACAAGCTGGGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGAACAGAAATCTGGGTTAGCCTGGGTTTTCACAAGCTGGGTGCC  500

seq1  CTCCTGGGAGCAGGATGGGGGGAAAGAATCCACCGCTCTTAGAGCTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGAGCAGGATGGGGGGAAAGAATCCACCGCTCTTAGAGCTAGGA  550

seq1  AGGGCAGCTCTGTGTAGGATGTAGAGAGTTCTCATGAGTAAAGAGCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCTCTGTGTAGGATGTAGAGAGTTCTCATGAGTAAAGAGCATAA  600

seq1  GAACTAGGAAAGAAGTAAAGGATCTATAACTGGCCAGGCAAGGATTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGGAAAGAAGTAAAGGATCTATAACTGGCCAGGCAAGGATTTGTG  650

seq1  ACAGGGACTAAGTCTGAAGGAGGAACTATTTCAAGGCAGTGAGCTCTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACTAAGTCTGAAGGAGGAACTATTTCAAGGCAGTGAGCTCTAAT  700

seq1  TGAGGTAAGTTTATATTCATCAAAATAGAAGTCGGGCTCAGTGGGATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAAGTTTATATTCATCAAAATAGAAGTCGGGCTCAGTGGGATTTA  750

seq1  TTATTGTTTACCGGTGCATCTCTTTCAGCTAGAAAGACTTAAGTTACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTTACCGGTGCATCTCTTTCAGCTAGAAAGACTTAAGTTACTGT  800

seq1  TAATTTCAAAGATGGGAAGAGAAAGACCAAAATGGTCAAATTAATTAAAG  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAATTTCAAAGATGGGAAGAGAAAGACC-AAATGGTCAAATTAATTAAAG  849

seq1  CAAACAATTAATTAAAGCAAGCTTTTTTATTCTTATACACGGGCTCCTTC  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAACAATTAATT-AAGCAAGCTTTTTTATTCTTATACACGGGCTCCTTC  898

seq1  CTCCTATAGTGGGGTTCAAGAGGTCAGTCAGCATTGGACATGGGGAACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATAGTGGGGTTCAAGAGGTCAGTCAGCATTGGACATGGGGAACTT  948

seq1  TTATAGTTCAGGAGTATGAAATTTCCAGAGGAAATTTTGGTAGGCAAATA  1000
      || ||||||| ||||||||||||| ||||||||| ||||||||   ||||
seq2  TT-TAGTTCA-GAGTATGAAATTT-CAGAGGAAA-TTTGGTAG--CAATA  992

seq1  GGTGGGGTTACAGAGCAGAATATAACAAGGTAGTCATAAAGTAGGTGGTT  1050
         | |||||| ||||||||||| |||  ||||||||  |||| ||||| 
seq2  ---GTGGTTAC-GAGCAGAATAT-ACA--GTAGTCAT--AGTA-GTGGT-  1031

seq1  ATAATAACCTTTTGAAACCAAGCCATGGTTCTGTTTCTTATTTGTAGTTC  1100
         |||  ||||||||||||   |||   |||| |||||| |||||| ||
seq2  ---ATATACTTTTGAAACCA--GCAT--ATCTG-TTCTTA-TTGTAG-TC  1071

seq1  AGGTTGTAGGTGGGGCATAGTTCACTAGCTCATAAACAGTCAAGATCCTA  1150
      ||| |||||||||| ||| ||||| |||||  ||||||| | |||||  |
seq2  AGG-TGTAGGTGGGCCAT-GTTCA-TAGCT--TAAACAGGC-AGATC--A  1113

seq1  GTTTGAATTTACTATAAGATGGCTTTCAAGTCCAATA  1187
      |||   || |||  ||||| |||||||||||||||||
seq2  GTT--GATCTAC--TAAGA-GGCTTTCAAGTCCAATA  1145