BAC Information

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BAC

Clone NameB6Ng01-159D23
Chromosome14 (Build37)
Map Location 43,981,784 - 44,106,855
singlet/doubletdoublet
Overlap geneLOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502
Upstream geneLOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik
Downstream geneLOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159D23.bB6Ng01-159D23.g
ACCDH952966DH952967
length1,100898
definitionDH952966|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D23, 5' end.DH952967|Mus musculus domesticus DNA, BAC clone: B6Ng01-159D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,981,784 - 43,982,906)(44,105,951 - 44,106,855)
sequence
gaattcccatagctgtgctgcaaaacaggacgtttcaggagccccttgag
ggtcataataatctaaagaactcacactattttatctgtgtagcattctg
caattgccgttattcaaaatcattttatcagagttagaatgagcctaaat
gggggttgggagaattgaggaacttcagacaggtctggtagtataaaatc
aggtaggtgtttgagaagcaaggttcagaaagtagaaaagaatttcccct
tgacccagagattccaaaacaaggagtagatatacacagagtctctaggg
cacatgaggtctgtaatggtcctcagagtagtccagaagaagatgatatc
ctgatgtccatcagctaaagagtgaaaatgtactatgtgatgcagccctt
tcatgaactattgctcagtgtgagataatccatgcaagtgtttgaccttc
aactagttagcctcatattactccaaatatccctgacacagttatattat
ttgaagaacattgttccattggatcctatttataatgacttcctattttt
ctgggatcatacctttggataccaaataggtcaggcaatgataaagggaa
cctctaatggaaggaactgtttactttgggacaagactgaaacagtgaag
gagaggctagtccaccaccaacacgtgatcctttgctggcagagaagcct
actctacacatcctttggaacttgctaagacagattgaataatgtaccaa
gaaccccggttcatgaggggaaagcatatcactgactgagctgtctatat
gctttgcccactatgtacctatcccatttaagatttgttttttatgtcta
caaatatcctgggagatttttataatagcattaactggggaatctaaaca
gtttgctgaagtataagtgctagtgttatgtgatacaaataatttgtata
tttgacagagtgctctacacagcttagattaacagtgtgtgttatattct
tcatggcatcacttttaaaatcagtctagcatggattttttcagtagcac
attcttctgattagtaccaatgcagtgcctgtgatcgttgatatggtttc

gaattctttgcatacttctatgactgtgaaagactggggaaattcctagg
aactggagtgtgaagtgagactaagtacaaggtctattggcacagaaatc
aaatattgaaacagcttagaagacagatcaggacaaaatatattgagtcc
agactgatgctgggaggtcaatgaataatccagagaacattgcctcagta
agaaaggagcagggaggagaggtacttgggcaggtcttgaagttagcctt
tgctaaaaatgagtaaaaaataaaattttcacagtcggtgcattcataca
ggaaaggaggagatgactcagtcactaaaggtcctgagaggccacactga
gctggcattcatgaactctccattatttagtaagaacaactgcacttgat
taagatgcttacatgacctttacacccagcacttccctctctgctactat
ctgtcatggtggaggatcttctcagggttgtctcttctgagctgtcagga
cactggcaggttttcctgtcacctgttatggtctcaacaaagtctcctct
caccagccagaaaatctcttcttgacatttgaggctcattgtgaggtaga
aagagaatggaaacaatctacaccattacagatgaggcctttggaaggca
atgtgggttagataatgtcatcagagtaattcttaccttttacaaaagcc
ttctaaacaaatggttccctaggatagtttcctaaccagagagcatgata
gcatgcggcttatgtatttgcatatgaagtgtgggagacaggctgctgat
tttagatagtcttaagtagaccatgctggccttgtacacaatccactaac
ttggtcagtgactttggatcccatagcaccctatatatttggatatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43981784_43982906
seq2: B6Ng01-159D23.b_43_1142

seq1  GAATTCCCATAGCTGTGCTGCAAAACAGGACGTTTCAGGAGCCCCTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATAGCTGTGCTGCAAAACAGGACGTTTCAGGAGCCCCTTGAG  50

seq1  GGTCATAATAATCTAAAGAACTCACACTATTTTATCTGTGTAGCATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAATAATCTAAAGAACTCACACTATTTTATCTGTGTAGCATTCTG  100

seq1  CAATTGCCGTTATTCAAAATCATTTTATCAGAGTTAGAATGAGCCTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCCGTTATTCAAAATCATTTTATCAGAGTTAGAATGAGCCTAAAT  150

seq1  GGGGGTTGGGAGAATTGAGGAACTTCAGACAGGTCTGGTAGTATAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTGGGAGAATTGAGGAACTTCAGACAGGTCTGGTAGTATAAAATC  200

seq1  AGGTAGGTGTTTGAGAAGCAAGGTTCAGAAAGTAGAAAAGAATTTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTGTTTGAGAAGCAAGGTTCAGAAAGTAGAAAAGAATTTCCCCT  250

seq1  TGACCCAGAGATTCCAAAACAAGGAGTAGATATACACAGAGTCTCTAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAGAGATTCCAAAACAAGGAGTAGATATACACAGAGTCTCTAGGG  300

seq1  CACATGAGGTCTGTAATGGTCCTCAGAGTAGTCCAGAAGAAGATGATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGGTCTGTAATGGTCCTCAGAGTAGTCCAGAAGAAGATGATATC  350

seq1  CTGATGTCCATCAGCTAAAGAGTGAAAATGTACTATGTGATGCAGCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCCATCAGCTAAAGAGTGAAAATGTACTATGTGATGCAGCCCTT  400

seq1  TCATGAACTATTGCTCAGTGTGAGATAATCCATGCAAGTATTTGACCTTC  450
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCATGAACTATTGCTCAGTGTGAGATAATCCATGCAAGTGTTTGACCTTC  450

seq1  AACTAGTTAGCCTCATATTACTCCAAATATCCCTGACACAGTTATATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTTAGCCTCATATTACTCCAAATATCCCTGACACAGTTATATTAT  500

seq1  TTGAAGAACATTGTTCCATTGGATCCTATTTATAATGACTTCCTATGTTT  550
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGAAGAACATTGTTCCATTGGATCCTATTTATAATGACTTCCTATTTTT  550

seq1  CTGGGATCATACCTTTGGATACCAAATAGGTCAGGCAATGATAAAGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCATACCTTTGGATACCAAATAGGTCAGGCAATGATAAAGGGAA  600

seq1  CCTCTAATGGAAGGAACTGTTTACTTTGGGACAAGACTGAAACAGTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATGGAAGGAACTGTTTACTTTGGGACAAGACTGAAACAGTGAAG  650

seq1  GAGAGGCTAGTCCACCACCAACACGTGATCCTTTGCTGGCAGAGAAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTAGTCCACCACCAACACGTGATCCTTTGCTGGCAGAGAAGCCT  700

seq1  ACTCTACACATCCTTTGGAACTTGCTAAGACAGATTGAATAATGTACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACACATCCTTTGGAACTTGCTAAGACAGATTGAATAATGTACCAA  750

seq1  GAACCCCGGTTCATGAGGGGAAAGCATATCACTGACTGAGCTGTCTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCGGTTCATGAGGGGAAAGCATATCACTGACTGAGCTGTCTATAT  800

seq1  GCTTTGCCCACTATGTACCTATCCCATTTAAGATTTGTTTTTTATGTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCCCACTATGTACCTATCCCATTTAAGATTTGTTTTTTATGTCTA  850

seq1  CAAAATATCCTGGGAGATTTTTATAATAGCATTAACTGGGGAATCTAAAC  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AAATATCCTGGGAGATTTTTATAATAGCATTAACTGGGGAATCTAAAC  899

seq1  AGTTTGCTGAAGTATAAGGTGCTAGTGTTATGTGAATACAAATAATTTGT  950
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  AGTTTGCTGAAGTATAA-GTGCTAGTGTTATGTG-ATACAAATAATTTGT  947

seq1  ATATTTGACAGAGTGCTCTACAACAGGCTTAGATATACAGGTGTGTTGTT  1000
      ||||||||||||||||||||| ||| ||||||||  ||| ||||| ||||
seq2  ATATTTGACAGAGTGCTCTAC-ACA-GCTTAGATTAACA-GTGTG-TGTT  993

seq1  ATATTCCTTCATGGCCATCACTTTTAAAATTCAGTTCCTAGCCATGGGAA  1050
      ||||| |||||||| |||||||||||||| |||||  |||| |||||  |
seq2  ATATT-CTTCATGG-CATCACTTTTAAAA-TCAGT--CTAG-CATGG--A  1035

seq1  TATTTTCAGTTAGCACATTCTTTCTGATTTTAGTACCCATGCAGTGCCTG  1100
      | ||||||| |||||||||| ||||||  |||||||| ||||||||||||
seq2  TTTTTTCAG-TAGCACATTC-TTCTGA--TTAGTACCAATGCAGTGCCTG  1081

seq1  TGGATTTCGTGTGATATGTTTTC  1123
      ||    |||| ||||||| ||||
seq2  TG---ATCGT-TGATATGGTTTC  1100

seq1: chr14_44105951_44106855
seq2: B6Ng01-159D23.g_67_964 (reverse)

seq1  TGATATTCAAATATATAGGGTTGCTATTGGGATCCAAAGTCAACCTTGAC  50
      |||||| ||||||||||||| ||||| |||||||||||||||    ||||
seq2  TGATATCCAAATATATAGGG-TGCTA-TGGGATCCAAAGTCA---CTGAC  45

seq1  CAAGTTAGTGGATTGTGTACAAGGCCAGCATGGTCTACTTAAGACTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAGTGGATTGTGTACAAGGCCAGCATGGTCTACTTAAGACTATCT  95

seq1  AAAATCAGCAGCCTGTCTCCCACACTTCATATTGCAAATACATAAGCCGC  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAATCAGCAGCCTGTCTCCCACACTTCATA-TGCAAATACATAAGCCGC  144

seq1  ATGCTATCATGCTCTCTGGTTAGGAAACTATCCTAGGGAACCATTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCATGCTCTCTGGTTAGGAAACTATCCTAGGGAACCATTTGTTT  194

seq1  AGAAGGCTTTTGTAAAAGGTAAGAATTACTCTGATGACATTATCTAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTTTTGTAAAAGGTAAGAATTACTCTGATGACATTATCTAACCC  244

seq1  ACATTGCCTTCCAAAGGCCTCATCTGTAATGGTGTAGATTGTTTCCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCTTCCAAAGGCCTCATCTGTAATGGTGTAGATTGTTTCCATTC  294

seq1  TCTTTCTACCTCACAATGAGCCTCAAATGTCAAGAAGAGATTTTCTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTACCTCACAATGAGCCTCAAATGTCAAGAAGAGATTTTCTGGCT  344

seq1  GGTGAGAGGAGACTTTGTTGAGACCATAACAGGTGACAGGAAAACCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAGGAGACTTTGTTGAGACCATAACAGGTGACAGGAAAACCTGCC  394

seq1  AGTGTCCTGACAGCTCAGAAGAGACAACCCTGAGAAGATCCTCCACCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTGACAGCTCAGAAGAGACAACCCTGAGAAGATCCTCCACCATG  444

seq1  ACAGATAGTAGCAGAGAGGGAAGTGCTGGGTGTAAAGGTCATGTAAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGTAGCAGAGAGGGAAGTGCTGGGTGTAAAGGTCATGTAAGCAT  494

seq1  CTTAATCAAGTGCAGTTGTTCTTACTAAATAATGGAGAGTTCATGAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCAAGTGCAGTTGTTCTTACTAAATAATGGAGAGTTCATGAATGC  544

seq1  CAGCTCAGTGTGACCTCTCAGGACCTTTAGTGACTGAGTCATCTCCTCCT  600
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGTGTGGCCTCTCAGGACCTTTAGTGACTGAGTCATCTCCTCCT  594

seq1  TTCCTGTATGAATGCACTGACTGTGAAAATTATATTTTTTACTCATTTTT  650
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  TTCCTGTATGAATGCACCGACTGTGAAAATTTTATTTTTTACTCATTTTT  644

seq1  AGCAAAGGCTAACTTCAAGACCTGCCCAAGTACCTCTCCTCCCTGCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGCTAACTTCAAGACCTGCCCAAGTACCTCTCCTCCCTGCTCCT  694

seq1  TTCTTACTGAGGCAATGTTCTCTGGATTATTCATTGACCTCCCAGCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTGAGGCAATGTTCTCTGGATTATTCATTGACCTCCCAGCATCA  744

seq1  GTCTGGACTCAATATATTTTGTCCTGATCTGTCTTCTAAGCTGTTTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGACTCAATATATTTTGTCCTGATCTGTCTTCTAAGCTGTTTCAAT  794

seq1  ATTTGATTTCTGTGCCAATAGACCTTGTACTTAGTCTCACTTCACACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTCTGTGCCAATAGACCTTGTACTTAGTCTCACTTCACACTCC  844

seq1  AGTTCCTAGGAATTTCCCCAGTCTTTCACAGTCATAGAAGTATGCAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTTCCTAGGAATTTCCCCAGTCTTTCACAGTCATAGAAGTATGC-AAAG  893

seq1  AATTC  905
      |||||
seq2  AATTC  898