BAC Information

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BAC

Clone NameB6Ng01-159H03
Chromosome14 (Build37)
Map Location 56,507,139 - 56,508,407
singlet/doubletsinglet
Overlap gene9130227C08Rik
Upstream genePabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3
Downstream gene2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159H03.bB6Ng01-159H03.g
ACCDH953108DH953109
length1,240705
definitionDH953108|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H03, 5' end.DH953109|Mus musculus domesticus DNA, BAC clone: B6Ng01-159H03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccaaatgtagagaaattgtttgaacattctgggaaaaggagagc
aaacctttaaagtaaacagaaggcagaaacacagtctttgaatgctagga
gtgtctggaacaggatatggctagaggccacaagactcaggatggaaggg
aatgtcggagtcagagccccaggttttcttagggatctgctttctctatg
gccttagccccacctctcagtgaatcaaatcaacctctttatctcaggat
ccatctccattcatttaccctccttgtgaattccaaaagaagctaaggta
tgtgcttgcctcattcctggtgctaagctggagggaagtctagtgatgtt
ccctcttaacagtgcatgggcccagttaagtattgcatgaagctgggtgt
ggtagtcgctcctgttctcccagcacatgagagactgaagcaggatagtc
tccattaatttgaggccagcatgagctacaaagtgtgttccaggctagcc
tggacaataaggtgagaccctgttttaataaactaaaaagaaaaaataaa
ggcaaaaagtgataaataaaataacatctctatttacagagagagacaga
agctaagtggttaactcccttggcaataaaaaattagaatttaaggttac
cttgtaggcaaaacagaaaacatagggcttattcctgcatagttgtgcac
acatggtatggatatatatgcagtttaaagctaattagctacttttaaat
cgttgtaaacattacatcttattttatgggtagtagtgttttgcctgcat
gcatgggtgtgcactgtgtgcatgcctggtgcccacagagtcctaaaaag
ggtgttggatcttctggagctggagttacagggcattgtgagtttcctgc
tgtggctgctgggaaccaggtcttttgcatgcacagcaagtgctcttaac
ttttgaaccatctctcggccctattacagtctttcacagctatcatactt
attccttaggtgtcattcagttttaacaatagtttccaagttaccgtgat
tatcttagtttattttcctattctggcgataatacctcgaagaggcactg
atggcgtgaacaatggctcaggggtacaggctccttgtctcctcaggttt
gttttctggcacttcaccatgtagcacacacgactcatgaatctaaccta
actggctgtggctgtgatgtgtgtcaagacacatgcaacc
gaattccctgtcttccttctatcaaagctgacactctcgtccccactcct
actgccatacctatttccatgaatgcagccagggttaaagtaattggttc
tctttttgaccgccggccagcatagctttcttctaaactggatgcagggt
gataatatactcggggtaacagctggatcatgacacaaaaatcatgagat
gaattaaaaaccttagttgatacacagggagtaagtcctgtattgcaagc
ccaccatccaaccggggaaggtacaagatagtaattagcttccgttctgg
acacggactgaatttgaccgcataggtgtttgtgagtggaaggtggggta
cctatacagagacctggattcctcgcggatacttcagtcagggtcagttt
ttgtcctgtaccccaagagcaggaagtatggctgctggttctgttgaaat
ctccattgaaggcgattccttcataataaggcggacccaaggacaggcat
agccagcagtcctcagtagcgcttggatcagttctgttaagggcataaaa
ggctcctctcactaggttaaacatcctctgtcttgaaggaatcgcggggg
taatagttagaggtacctgaagagtgggaggttgggtgatattaaggggg
tccgcaatcactggagtaggctgagtaattgtatgggtgagggggtgtga
atttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56507139_56508407
seq2: B6Ng01-159H03.b_50_1289

seq1  GAATTCCCAAATGTAGAGAAATTGTTTGAACATTCTGGGAAAAGGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAATGTAGAGAAATTGTTTGAACATTCTGGGAAAAGGAGAGC  50

seq1  AAACCTTTAAAGTAAACAGAAGGCAGAAACACAGTCTTTGAATGCTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTAAAGTAAACAGAAGGCAGAAACACAGTCTTTGAATGCTAGGA  100

seq1  GTGTCTGGAACAGGATATGGCTAGAGGCCACAAGACTCAGGATGGAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGAACAGGATATGGCTAGAGGCCACAAGACTCAGGATGGAAGGG  150

seq1  AATGTCGGAGTCAGAGCCCCAGGTTTTCTTAGGGATCTGCTTTCTCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCGGAGTCAGAGCCCCAGGTTTTCTTAGGGATCTGCTTTCTCTATG  200

seq1  GCCTTAGCCCCACCTCTCAGTGAATCAAATCAACCTCTTTATCTCAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGCCCCACCTCTCAGTGAATCAAATCAACCTCTTTATCTCAGGAT  250

seq1  CCATCTCCATTCATTTACCCTCCTTGTGAATTCCAAAAGAAGCTAAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCATTCATTTACCCTCCTTGTGAATTCCAAAAGAAGCTAAGGTA  300

seq1  TGTGCTTGCCTCATTCCTGGTGCTAAGCTGGAGGGAAGTCTAGTGATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGCCTCATTCCTGGTGCTAAGCTGGAGGGAAGTCTAGTGATGTT  350

seq1  CCCTCTTAACAGTGCATGGGCCCAGTTAAGTATTGCATGAAGCTGGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTAACAGTGCATGGGCCCAGTTAAGTATTGCATGAAGCTGGGTGT  400

seq1  GGTAGTCGCTCCTGTTCTCCCAGCACATGAGAGACTGAAGCAGGATAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCGCTCCTGTTCTCCCAGCACATGAGAGACTGAAGCAGGATAGTC  450

seq1  TCCATTAATTTGAGGCCAGCATGAGCTACAAAGTGTGTTCCAGGCTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAATTTGAGGCCAGCATGAGCTACAAAGTGTGTTCCAGGCTAGCC  500

seq1  TGGACAATAAGGTGAGACCCTGTTTTAATAAACTAAAAAGAAAAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATAAGGTGAGACCCTGTTTTAATAAACTAAAAAGAAAAAATAAA  550

seq1  GGCAAAAAGTGATAAATAAAATAACATCTCTATTTACAGAGAGAGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAAGTGATAAATAAAATAACATCTCTATTTACAGAGAGAGACAGA  600

seq1  AGCTAAGTGGTTAACTCCCTTGGCAATAAAAAATTAGAATTTAAGGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTGGTTAACTCCCTTGGCAATAAAAAATTAGAATTTAAGGTTAC  650

seq1  CTTGTAGGCAAAACAGAAAACATAGGGCTTATTCCTGCATAGTTGTGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGGCAAAACAGAAAACATAGGGCTTATTCCTGCATAGTTGTGCAC  700

seq1  ACATGGTATGGATATATATGCAGTTTAAAGCTAATTAGCTACTTTTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTATGGATATATATGCAGTTTAAAGCTAATTAGCTACTTTTAAAT  750

seq1  CGTTGTAAACATTACATCTTATTTTATGGGTAGTAGTGTTTTGCCTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTAAACATTACATCTTATTTTATGGGTAGTAGTGTTTTGCCTGCAT  800

seq1  GCATGGGTGTGCACTGTGTGCATGCCTGGTGCCCACAGAGTCCTAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTGTGCACTGTGTGCATGCCTGGTGCCCACAGAGTCCTAAAAAG  850

seq1  GGTGTTGGATCTTCTGGAGCTGGAGTTACAGGGCATTGTGAGTTTCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGGATCTTCTGGAGCTGGAGTTACAGGGCATTGTGAGTTTCCTGC  900

seq1  TGTGGCTGCTGGGAACCAGGTCTTTTGCATGCACAGCAAGTGCTCTTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGCTGGGAACCAGGTCTTTTGCATGCACAGCAAGTGCTCTTAAC  950

seq1  TTTTGAACCATCTCTCCGGCCCTATTTACAGTCTTTCAACAGCTATCAAT  1000
      ||||||||||||||| |||||||| |||||||||||| ||||||||| ||
seq2  TTTTGAACCATCTCT-CGGCCCTA-TTACAGTCTTTC-ACAGCTATC-AT  996

seq1  ACTTATTCCTTAGGATGTTCATTCAGTTTTTAACAATTAGTTTCCAAGTT  1050
      |||||||||||||| || |||||||| ||||||||| |||||||||||||
seq2  ACTTATTCCTTAGG-TG-TCATTCAG-TTTTAACAA-TAGTTTCCAAGTT  1042

seq1  ACCGTGATTATCTTAGTTTATTTTCCTATACTGGCGATAAAATACTCCGA  1100
      ||||||||||||||||||||||||||||| ||||||||  |||||  || 
seq2  ACCGTGATTATCTTAGTTTATTTTCCTATTCTGGCGAT--AATACCTCG-  1089

seq1  AAGAAGCAACTGAAGGGCTGGAGCAATGGCTCAGGGGTTACAAGTGCTCC  1150
      |||| || |||| | |||  || |||||||||||||| ||||   |||||
seq2  AAGAGGC-ACTG-ATGGCGTGAACAATGGCTCAGGGG-TACA--GGCTCC  1134

seq1  TTG-CTCCTTCAGGTTTGTTTCCTGGCACTCACACCATTGTAGCACACAC  1199
      ||| |||| |||||||||||| ||||||||  ||||| ||||||||||||
seq2  TTGTCTCC-TCAGGTTTGTTTTCTGGCACT-TCACCA-TGTAGCACACAC  1181

seq1  AGCTCCAATGAGTCTAACACCCTAATCTGGGCTTTGTGAGCCTGCGATGT  1249
        |||  |||| |||||   ||||| ||||      || | ||| |||||
seq2  GACTC--ATGAATCTAA---CCTAA-CTGG-----CTGTGGCTGTGATGT  1220

seq1  GTGTCAAGACACATGCAACC  1269
      ||||||||||||||||||||
seq2  GTGTCAAGACACATGCAACC  1240