BAC Information

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BAC

Clone NameB6Ng01-159I01
Chromosome14 (Build37)
Map Location 29,315,205 - 29,514,627
singlet/doubletdoublet
Overlap geneWnt5a, LOC100040218
Upstream geneCcdc66, LOC665370, Erc2, LOC100040206
Downstream geneCacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159I01.bB6Ng01-159I01.g
ACCDH953150DH953151
length1,0261,054
definitionDH953150|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I01, 5' end.DH953151|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,315,205 - 29,316,230)(29,513,567 - 29,514,627)
sequence
gaattccatttgttcgggtctgaaggacaggactgaggtctttggtactt
ggagcccagagttccagtgacatcactctgtgcaaccagtattaaaacca
ccagctccgaagctgtcatccctttatctgaagtcactgggaccagatac
gcttgctggaaatcttgccatacatttttcttgaatgataaaatatagta
tatgattcagacagcaatcctgatgtctggagaaatagctaataatcaaa
tatgttggaaggaggaccattctctggcagtgaaataaagaacagctaca
actggtctagtcaacatttgcatgccaccaaggggttttgcaaaacaccc
ccaatttcccagagctgaatttttttttctagaaaagtcagtgtctagca
acattgagtacttcgcccagacccggtgtttctgtggtcagcttggtgca
gcctgttgtaaaagccattctcttccactctaagtgccctccagataccc
tgtcaactttctgtttggttgtgtgtgtgtgtttcagaaaatacggagtg
cagaggggtcttgtgaacatctacaaagtagcaggggaggaactgggact
ccaggctccatcttccactagaggatcaaggaatgaatcctttgaggctg
ggtctaacccaaaaaggcaactgtagagaagcaagcaattcttcaggtaa
ctcaggcaacagctgagtaaaataaaggaaatgctcagtgcttttgcttt
gactgtaagtggaagggattttgtcctctgtcctgttcatttatgtggcc
tgcctctgggaatctagggcacttgggaagccaggtggcttctctgttct
ttgtggggctctatttcacagctactcccagcttgttttcaacagctact
ggtgagttgtatcctggagatgtgctagcccagggcagagctgggatgcc
tgctggggacacctgggctggggtggagggcaatgggaatttctttgcag
ctgcagctacaagctgaatagctgaa
gaattcaggcccttgtgcttgcaaggcaagtactctactgactgagctat
cctcagccaatcccacaatgcttaaaaaagctaattattagctgtgtgat
aaatatttccttcaactgtttttcacttgtcattcaagacatagctaatc
attcgcagtcatttagtcaaagcttaattagatcatgccataatgtaacc
ttcttcccaattcgattgctttcttaaatatatacatatatatttatact
ctaatatataaaatataatatacaatgtacatattgcatgttatattata
tggtatatattatataaaatataatgtgcatattatataacactaaaata
tattgatatacatattcatatgtggctatgggcattttatctaaatataa
atatatacatatatattatatttatattaatatatattgcagccatttct
caattcttcaatatcctggaaactgttgactctctgacttcttataaagt
acaacccatgtcacccttgctcaacaaaaactctcattggcattggggcc
actcagtcatactggtcgttcagctctgtgacatgcagagtagctgagat
ccttgtattccaactgagtcactttgcctgaaaaggtccagtgctctgta
atgactatggtatacacaggatggttcccataggtttttctcctaaggat
gattcttgtgtatctgagtgagaaaaatcaaatatggcagtcatctgttc
agaattcatgtcctagctaggaagtctttggcattttccattttagtttt
attggtatgaatcctatctgggaaaccgaatcatgcttacattccttaca
tcccagaacataatcctttttcttcaaaagcaagcaggacagtatctagg
gctttctctgaatgcctccttgaagcaaacatccttttccttcaagcaga
attgagcatttgcacttgtcattgactctgagtgaaaaggaaaaagatcc
agcctcaactgggtccttctcctgatcggcttattctctggagccaaagg
aaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29315205_29316230
seq2: B6Ng01-159I01.b_45_1070

seq1  GAATTCCATTTGTTCGGGTCTGAAGGACAGGACTGAGGTCTTTGGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTGTTCGGGTCTGAAGGACAGGACTGAGGTCTTTGGTACTT  50

seq1  GGAGCCCAGAGTTCCAGTGACATCACTCTGTGCAACCAGTATTAAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCCAGAGTTCCAGTGACATCACTCTGTGCAACCAGTATTAAAACCA  100

seq1  CCAGCTCCGAAGCTGTCATCCCTTTATCTGAAGTCACTGGGACCAGATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCGAAGCTGTCATCCCTTTATCTGAAGTCACTGGGACCAGATAC  150

seq1  GCTTGCTGGAAATCTTGCCATACATTTTTCTTGAATGATAAAATATAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGGAAATCTTGCCATACATTTTTCTTGAATGATAAAATATAGTA  200

seq1  TATGATTCAGACAGCAATCCTGATGTCTGGAGAAATAGCTAATAATCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCAGACAGCAATCCTGATGTCTGGAGAAATAGCTAATAATCAAA  250

seq1  TATGTTGGAAGGAGGACCATTCTCTGGCAGTGAAATAAAGAACAGCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGGAAGGAGGACCATTCTCTGGCAGTGAAATAAAGAACAGCTACA  300

seq1  ACTGGTCTAGTCAACATTTGCATGCCACCAAGGGGTTTTGCAAAACACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTAGTCAACATTTGCATGCCACCAAGGGGTTTTGCAAAACACCC  350

seq1  CCAATTTCCCAGAGCTGAATTTTTTTTTCTAGAAAAGTCAGTGTCTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCCCAGAGCTGAATTTTTTTTTCTAGAAAAGTCAGTGTCTAGCA  400

seq1  ACATTGAGTACTTCGCCCAGACCCGGTGTTTCTGTGGTCAGCTTGGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGTACTTCGCCCAGACCCGGTGTTTCTGTGGTCAGCTTGGTGCA  450

seq1  GCCTGTTGTAAAAGCCATTCTCTTCCACTCTAAGTGCCCTCCAGATACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTGTAAAAGCCATTCTCTTCCACTCTAAGTGCCCTCCAGATACCC  500

seq1  TGTCAACTTTCTGTTTGGTTGTGTGTGTGTGTTTCAGAAAATACGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACTTTCTGTTTGGTTGTGTGTGTGTGTTTCAGAAAATACGGAGTG  550

seq1  CAGAGGGGTCTTGTGAACATCTACAAAGTAGCAGGGGAGGAACTGGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGTCTTGTGAACATCTACAAAGTAGCAGGGGAGGAACTGGGACT  600

seq1  CCAGGCTCCATCTTCCACTAGAGGATCAAGGAATGAATCC-TTGAGGCTG  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAGGCTCCATCTTCCACTAGAGGATCAAGGAATGAATCCTTTGAGGCTG  650

seq1  GGTCTAACCCAAAAAGGCAACTGTAGAGAAGCAAGCAATTCTTCAGGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAACCCAAAAAGGCAACTGTAGAGAAGCAAGCAATTCTTCAGGTAA  700

seq1  CTCAGGCAACAGCTGAGTAAAATAAAGGAAATGCTCAGTGCTTTTGCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCAACAGCTGAGTAAAATAAAGGAAATGCTCAGTGCTTTTGCTTT  750

seq1  GACTGTTAAGTGGAAGGGATTTTGTCCTCTGTCCTGTTCATTTATGTGGC  799
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTG-TAAGTGGAAGGGATTTTGTCCTCTGTCCTGTTCATTTATGTGGC  799

seq1  CTGCCTCT-GGAATCCAGGGCACTTGGG-AGCCAGGTGGCTTCTCTGTCC  847
      |||||||| |||||| |||||||||||| ||||||||||||||||||| |
seq2  CTGCCTCTGGGAATCTAGGGCACTTGGGAAGCCAGGTGGCTTCTCTGTTC  849

seq1  TTTGTGGGGCTCTA-TTCACAGCTACTCCCAGCTTGTTTTCAACAGCCAC  896
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  TTTGTGGGGCTCTATTTCACAGCTACTCCCAGCTTGTTTTCAACAGCTAC  899

seq1  TGGTGAGTTGTATCCTGGAGATGTGCTAGCCCAGGGCAGAGCTGGGATGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGTTGTATCCTGGAGATGTGCTAGCCCAGGGCAGAGCTGGGATGC  949

seq1  CTGCCTGGGGACACCTGGGCTGGGGGTGGAGGGCAATGGGAATTTCTTTG  996
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTG-CTGGGGACACCTGGGCT-GGGGTGGAGGGCAATGGGAATTTCTTTG  997

seq1  CAGCTGCAGCTACAGAGCTGAATAGCTGGA  1026
      |||||||||||||| ||||||||||||| |
seq2  CAGCTGCAGCTACA-AGCTGAATAGCTGAA  1026

seq1: chr14_29513567_29514627
seq2: B6Ng01-159I01.g_66_1119 (reverse)

seq1  TTTTCCTCTTTGGCTTCCCATGAATTAAGGCGATCA-GAGAA-GAGCCAG  48
      |||||  ||||||||  |||   | |||| |||||| ||||| || ||||
seq2  TTTTC--CTTTGGCT--CCAGAGAATAAGCCGATCAGGAGAAGGACCCAG  46

seq1  TTGGAAGGCTGGATCTTTTTCATTTTCACTCAGAGTCAATGACAAGTGCA  98
      |||  |||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTG--AGGCTGGATCTTTTTCCTTTTCACTCAGAGTCAATGACAAGTGCA  94

seq1  AATGCTCAATTCTGGCTTGAAGGAAAAGGATGTTTGGCTTCAAGGAGGCA  148
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  AATGCTCAATTCT-GCTTGAAGGAAAAGGATGTTT-GCTTCAAGGAGGCA  142

seq1  TTCAGAGAAAGCCCTAGATACTGTCCTGCCTGCTTTTGAAGAAAAAGGAT  198
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCAGAGAAAGCCCTAGATACTGTCCTGCTTGCTTTTGAAGAAAAAGGAT  192

seq1  TATGTTCTGGGATGTAAGGAATTGTAAGCATGATTCGGTTTCCCAGATAG  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATGTTCTGGGATGTAAGGAA-TGTAAGCATGATTCGGTTTCCCAGATAG  241

seq1  GATTCATACCAATAAAACTAAAATGGAAAATGCCAAAGACTTCCTAGCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATACCAATAAAACTAAAATGGAAAATGCCAAAGACTTCCTAGCTA  291

seq1  GGACCTGAATTCTGAACAGATGACTGCCATATTTGATTTTTCTCACTCAG  348
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGAATTCTGAACAGATGACTGCCATATTTGATTTTTCTCACTCAG  341

seq1  ATACACAAGAATCATCCTTAGGAGAAAAACCTATGGGAACCATCCTGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAAGAATCATCCTTAGGAGAAAAACCTATGGGAACCATCCTGTGT  391

seq1  ATACCATAGTCATTACAGAGCACTGGACCTTTTCAGGCAAAGTGACTCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATAGTCATTACAGAGCACTGGACCTTTTCAGGCAAAGTGACTCAG  441

seq1  TTGGAATACAAGGATCTCAGCTACTCTGCATGTCACAGAGCTGAACGACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATACAAGGATCTCAGCTACTCTGCATGTCACAGAGCTGAACGACC  491

seq1  AGTATGACTGAGTGGCCCCAATGCCAATGAGAGTTTTTGTTGAGCAAGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGACTGAGTGGCCCCAATGCCAATGAGAGTTTTTGTTGAGCAAGGG  541

seq1  TGACATGGGTTGTACTTTATAAGAAGTCAGAGAGTCAACAGTTTCCAGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGGTTGTACTTTATAAGAAGTCAGAGAGTCAACAGTTTCCAGGA  591

seq1  TATTGAAGAATTGAGAAATGGCTGCAATATATATTAATATAAATATAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGAATTGAGAAATGGCTGCAATATATATTAATATAAATATAATA  641

seq1  TATATGTATATATTTATATTTAGATAAAATGCCCATAGCCACATATGAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATATATTTATATTTAGATAAAATGCCCATAGCCACATATGAAT  691

seq1  ATGTATATCAATATATTTTAGTGTTATATAATATGCACATTATATTTTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATCAATATATTTTAGTGTTATATAATATGCACATTATATTTTAT  741

seq1  ATAATATATACCATATAATATAACATGCAATATGTACATTGTATATTATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATACCATATAATATAACATGCAATATGTACATTGTATATTATA  791

seq1  TTTTATATATTAGAGTATAAATATATATGTATATATTTAAGAAAGCAATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATATTAGAGTATAAATATATATGTATATATTTAAGAAAGCAATC  841

seq1  GAATTGGGAAGAAGGTTACATTATGGCATGATCTAATTAAGCTTTGACTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGAAGAAGGTTACATTATGGCATGATCTAATTAAGCTTTGACTA  891

seq1  AATGACTGCGAATGATTAGCTATGTCTTGAATGACAAGTGAAAAACAGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTGCGAATGATTAGCTATGTCTTGAATGACAAGTGAAAAACAGTT  941

seq1  GAAGGAAATATTTATCACACAGCTAATAATTAGCTTTTTTAAGCATTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATATTTATCACACAGCTAATAATTAGCTTTTTTAAGCATTGTG  991

seq1  GGATTGGCTGAGGATAGCTCAGTCAGTAGAGTACTTGCCTTGCAAGCACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGCTGAGGATAGCTCAGTCAGTAGAGTACTTGCCTTGCAAGCACA  1041

seq1  AGGGCCTGAATTC  1061
      |||||||||||||
seq2  AGGGCCTGAATTC  1054