BAC Information

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BAC

Clone NameB6Ng01-160B24
Chromosome14 (Build37)
Map Location 11,279,694 - 11,423,731
singlet/doubletdoublet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, Ptprg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160B24.bB6Ng01-160B24.g
ACCDH953584DH953585
length1,1601,051
definitionDH953584|Mus musculus domesticus DNA, BAC clone: B6Ng01-160B24, 5' end.DH953585|Mus musculus domesticus DNA, BAC clone: B6Ng01-160B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,279,694 - 11,280,883)(11,422,656 - 11,423,731)
sequence
gaattcaaagaaccaagcaacttctaggccccatggtccacttggacctg
ctctaatcccatttgaaaaatgagagagtctgtataccacacatctcttt
gagctgatggttacaacgtaatgcctcattcctacttctctcttccttgc
catcaaattcttacctgcttttccctaataagaaaggcatcagagccata
taacattgctgtaagaatgaaagaatgtaatgctatttttaaaacaaaat
gaacagtagctgaagttctatgacaaatcagaaatccctggttttaaaat
tagaaccttgagtttccaagctatgtcgtcacaggtagtacctacaggaa
gggcaccatcagccttctcaacacttaaacagcacctatctcctgaagca
aagagaactaaaaaacttgtccctggaagcgagcttaagcctctagaggg
gccacttctaaagagttcctcttcagctgtaagttgtgctcctccttttg
acctcggtcttcattcacaggaggagaagctcttctgagctcagcaacca
ccatctctatacctgggacgaagcatccttggacgagtcaccatgccact
ccagtcaccttgaggacagtttcagaaaacccctcatgacagagatccat
tctttcctttcaaatatctgttttgttctatatctcccatggcaggtaaa
gccaggccttcctcagcaccacttgctccctatttgttctggggctgaaa
tccaaacgtgtctcctattatagctgaactatttttgtgtacatttccta
ccaaattcagcagaaagttgacaaagggcaaggtagaattccaggcaata
ttttttaaatagaattttatttttaagttccaggacagagaacagtgagc
tgcctcagatgcatatgttggcagcagcatttctctctttctataggttg
ctgggacgtcactggtcacgtagaaactaacccagtccctgctttgtcta
gaaaagactggaatttattccttagagaatttattccaggccattatttt
acaatggattcactgttactatatgacattatgaagacctctgggagaag
agggaattcccgcaattggttgagacctgccacttaggaattctctggcc
tttctcttga
gaattctttgctatccttctcagtttgtgtggaccaagaatgcatttcgt
tcatacttattacaaacagcttcattagtctcacccaaaaaaaaataggc
cttcttccaggaggtgaggcttttcttccacaactgcaccaattcttttg
ccttgcttgtttcctgctgggctgccaccttctctgtatgtttgaagtag
tagggcagcttcacacatgaaatcagttactgggacatcaagaagtggga
gtcccacatgaacatcagctgctgctgctgctattgtgttaatggtttgt
cacagattaaagtttgcacatcagactgtttgtttgtttgtttgtttgtt
tgtttttgcatcaccaacaatgagtcatgttgttgcctgcgatatacact
tagtaaagatggagtgtttactgtataactgatatgtctgagagaggagt
ttagagggagatcagaagccagcaaatggtaaatcttgtttttaaagaaa
ggggctcttgcatcctttataggtagtcctcatccatcagctggttatcc
atgcggggaaaactcaggcccacgtgaaaacctttcaaactgtgagcact
ctactttcctatctggtgggtgggaactgctgctgatctgtttcaaactg
accttcctgtcttctcctaggtagatgacaccatatatgctgtatacaac
tcataaagtaaaaaaaaaaaaaattaaagactctgaatattattaatttt
tatagtggtctggagaacttcttgcagaaaatctgtctttattttggcca
atcaaagttaaggggacacatgctaattttgcattttatagaatggtgat
atattaatatacattggctctgcatagtgtctgttttcttactatgccca
acatatgcagtttctagaatggaatagatcatatccaaaatagacaaaag
attcagcaactattggtttacatgcaaaatgtatttttgtggcattcatg
ataatgccttagaaggatatggtaatttctttctgattagctttagaact
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_11279694_11280883
seq2: B6Ng01-160B24.b_43_1202

seq1  GAATTCAAAGAACCAAGCAACTTCTAGGCCCCATGGTCCACTTGGACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAACCAAGCAACTTCTAGGCCCCATGGTCCACTTGGACCTG  50

seq1  CTCTAATCCCATTTGAAAAATGAGAGAGTCTGTATACCACACATCTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATCCCATTTGAAAAATGAGAGAGTCTGTATACCACACATCTCTTT  100

seq1  GAGCTGATGGTTACAACGTAATGCCTCATTCCTACTTCTCTCTTCCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATGGTTACAACGTAATGCCTCATTCCTACTTCTCTCTTCCTTGC  150

seq1  CATCAAATTCTTACCTGCTTTTCCCTAATAAGAAAGGCATCAGAGCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATTCTTACCTGCTTTTCCCTAATAAGAAAGGCATCAGAGCCATA  200

seq1  TAACATTGCTGTAAGAATGAAAGAATGTAATGCTATTTTTAAAACAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGCTGTAAGAATGAAAGAATGTAATGCTATTTTTAAAACAAAAT  250

seq1  GAACAGTAGCTGAAGTTCTATGACAAATCAGAAATCCCTGGTTTTAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTAGCTGAAGTTCTATGACAAATCAGAAATCCCTGGTTTTAAAAT  300

seq1  TAGAACCTTGAGTTTCCAAGCTATGTCGTCACAGGTAGTACCTACAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTTGAGTTTCCAAGCTATGTCGTCACAGGTAGTACCTACAGGAA  350

seq1  GGGCACCATCAGCCTTCTCAACACTTAAACAGCACCTATCTCCTGAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCATCAGCCTTCTCAACACTTAAACAGCACCTATCTCCTGAAGCA  400

seq1  AAGAGAACTAAAAAACTTGTCCCTGGAAGCGAGCTTAAGCCTCTAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACTAAAAAACTTGTCCCTGGAAGCGAGCTTAAGCCTCTAGAGGG  450

seq1  GCCACTTCTAAAGAGTTCCTCTTCAGCTGTAAGTTGTGCTCCTCCTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCTAAAGAGTTCCTCTTCAGCTGTAAGTTGTGCTCCTCCTTTTG  500

seq1  ACCTCGGTCTTCATTCACAGGAGGAGAAGCTCTTCTGAGCTCAGCAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGGTCTTCATTCACAGGAGGAGAAGCTCTTCTGAGCTCAGCAACCA  550

seq1  CCATCTCTATACCTGGGACGAAGCATCCTTGGACGAGTCACCATGCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTATACCTGGGACGAAGCATCCTTGGACGAGTCACCATGCCACT  600

seq1  CCAGTCACCTTGAGGACAGTTTCAGAAAACCCCTCATGACAGAGATCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACCTTGAGGACAGTTTCAGAAAACCCCTCATGACAGAGATCCAT  650

seq1  TCTTTCCTTTCAAATATCTGTTTTGTTCTATATCTCCCATGGCAGGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTTCAAATATCTGTTTTGTTCTATATCTCCCATGGCAGGTAAA  700

seq1  GCCAGGCCTTCCTCAGCACCACTTGCTCCCTATTTGTTCTGGGGCTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCCTTCCTCAGCACCACTTGCTCCCTATTTGTTCTGGGGCTGAAA  750

seq1  TCCAAACGTGTCTCCTATTATAGCTGAACTATTTTTGTGTACATTTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACGTGTCTCCTATTATAGCTGAACTATTTTTGTGTACATTTCCTA  800

seq1  CCAAATTCAGCAGAAAGTTGACAAAGGGCAAGGTAGAATTCCAGGCAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCAGCAGAAAGTTGACAAAGGGCAAGGTAGAATTCCAGGCAATA  850

seq1  TTTTTTAAATAGAATTTTATTTTTAAGTTCCAGGACAGAGAACAGTGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATAGAATTTTATTTTTAAGTTCCAGGACAGAGAACAGTGAGC  900

seq1  TGCCTCAGAATGCATAATGTTGGCAGCAGCATTTCTCTCTTTCTATAGGT  950
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  TGCCTCAG-ATGCAT-ATGTTGGCAGCAGCATTTCTCTCTTTCTATAGGT  948

seq1  TGCTGGGAACGTCACTGGTCACGTAAGAAAACTAACCCAGTCCCTGCCTT  1000
      ||||||| |||||||||||||||||   |||||||||||||||||| |||
seq2  TGCTGGG-ACGTCACTGGTCACGTA--GAAACTAACCCAGTCCCTG-CTT  994

seq1  TGTCTAAGAAAAGACTGGAATTTTATTCCCTAAGGAGAATTTTATTCCAA  1050
      ||||| |||||||||||||| |||||||| ||  ||||| |||||||| |
seq2  TGTCT-AGAAAAGACTGGAA-TTTATTCCTTA--GAGAA-TTTATTCC-A  1038

seq1  GGCCAATTATTTTACAAATTGGATTCACTGTTTACCTAATATGACATAAT  1100
      |||| ||||||||||||  ||||||||||| ||||   ||||||||| ||
seq2  GGCC-ATTATTTTACAA--TGGATTCACTG-TTAC--TATATGACATTAT  1082

seq1  G-AGA-CTCTGGGAAGACAGAAGGAAAATCCCGCAATTGGTTTTGAGGAA  1148
      | ||| ||||||| ||| || ||| || ||||||||||||||     || 
seq2  GAAGACCTCTGGG-AGA-AG-AGGGAATTCCCGCAATTGGTT-----GAG  1124

seq1  CCCTGCCCACTTAGGGTATTCTCTGGGGTCTTTCTTTCTTGA  1190
       |||| ||||||| || |||||||  || |||||  ||||||
seq2  ACCTG-CCACTTA-GGAATTCTCT--GGCCTTTC--TCTTGA  1160

seq1: chr14_11422656_11423731
seq2: B6Ng01-160B24.g_68_1118 (reverse)

seq1  TAGTTCTTTAAAGCCCTAAATCAGAAAGAAATTTACCATATTTCCCTTCT  50
      ||||||  ||||||    ||||||||||||| |||||||||   ||||||
seq2  TAGTTC--TAAAGC---TAATCAGAAAGAAA-TTACCATAT---CCTTCT  41

seq1  AAGGCATTTATCATGAATGCCACAAATATACATTTTTGGCATGTAAAACC  100
      |||||| ||||||||||||||||||| |||||||||  ||||||||| | 
seq2  AAGGCA-TTATCATGAATGCCACAAAAATACATTTT--GCATGTAAACCA  88

seq1  ATAGTTGCTGAATCTTTTGTCTATTTTGGAATATGATTCTATTTCCATCT  150
      ||||||||||||||||||||||||||||| |||||| |||||| |  |||
seq2  ATAGTTGCTGAATCTTTTGTCTATTTTGG-ATATGA-TCTATTCCATTCT  136

seq1  AGAAACTGCAATATGTTGGGCAATTAAGTAAGAAAAACAGAACACTTATT  200
      ||||||||| ||||||||||||    |||||| ||||||| |||||   |
seq2  AGAAACTGC-ATATGTTGGGCA---TAGTAAG-AAAACAG-ACACT--AT  178

seq1  GCAGAAGCCAATGTATATT-ATATATCACCATTCTATAAAATGCAAAATT  249
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCAG-AGCCAATGTATATTAATATATCACCATTCTATAAAATGCAAAATT  227

seq1  AGCATGTGTCCCCTTAACTTTGATTGG-CAAAATAAAGACAGATTTTTCT  298
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  AGCATGTGTCCCCTTAACTTTGATTGGCCAAAATAAAGACAGA-TTTTCT  276

seq1  GCAAGAAGTTCTCCAGACCACTATAAAAATTAATAATATTCAGAGTCTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGTTCTCCAGACCACTATAAAAATTAATAATATTCAGAGTCTTT  326

seq1  TATTTTTTTTTTTTTTTTTACTTTATGAGTTGTATACAGCATATATGGTG  398
       |   |||||||||||||||||||||||||||||||||||||||||||||
seq2  AA---TTTTTTTTTTTTTTACTTTATGAGTTGTATACAGCATATATGGTG  373

seq1  TCATCTACCTAGGAGAAGACAGGAAGGTCAGTTTGAAACAGATCAGCAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTACCTAGGAGAAGACAGGAAGGTCAGTTTGAAACAGATCAGCAGC  423

seq1  AGTTCCCACCCACCAGATAGGAAAGTAGAGTGCTCACAGTTTGAAAGGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCACCCACCAGATAGGAAAGTAGAGTGCTCACAGTTTGAAAGGTT  473

seq1  TTCACGTGGGCCTGAGTTTTCCCCGCATGGATAACCAGCTGATGGATGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTGGGCCTGAGTTTTCCCCGCATGGATAACCAGCTGATGGATGAG  523

seq1  GACTACCTATAAAGGATGCAAGAGCCCCTTTCTTTAAAAACAAGATTTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACCTATAAAGGATGCAAGAGCCCCTTTCTTTAAAAACAAGATTTAC  573

seq1  CATTTGCTGGCTTCTGATCTCCCTCTAAACTCCTCTCTCAGACATATCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTGGCTTCTGATCTCCCTCTAAACTCCTCTCTCAGACATATCAG  623

seq1  TTATACAGTAAACACTCCATCTTTACTAAGTGTATATCGCAGGCAACAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAGTAAACACTCCATCTTTACTAAGTGTATATCGCAGGCAACAAC  673

seq1  ATGACTCATTGTTGGTGATGCAAAAACAAACAAACAAACAAACAAACAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCATTGTTGGTGATGCAAAAACAAACAAACAAACAAACAAACAAA  723

seq1  CAGTCTGATGTGCAAACTTTAATCTGTGACAAACCATTAACACAATAGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGATGTGCAAACTTTAATCTGTGACAAACCATTAACACAATAGCA  773

seq1  GCAGCAGCAGCTGATGTTCATGTGGGACTCCCACTTCTTGATGTCCCAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCAGCTGATGTTCATGTGGGACTCCCACTTCTTGATGTCCCAGT  823

seq1  AACTGATTTCATGTGTGAAGCTGCCCTACTACTTCAAACATACAGAGAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTTCATGTGTGAAGCTGCCCTACTACTTCAAACATACAGAGAAG  873

seq1  GTGGCAGCCCAGCAGGAAACAAGCAAGGCAAAAGAATTGGTGCAGTTGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGCCCAGCAGGAAACAAGCAAGGCAAAAGAATTGGTGCAGTTGTG  923

seq1  GAAGAAAAGCCTCACCTCCTGGAAGAAGGCCTATTTTTTTTTGGGTGAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGCCTCACCTCCTGGAAGAAGGCCTATTTTTTTTTGGGTGAGA  973

seq1  CTAATGAAGCTGTTTGTAATAAGTATGAACGAAATGCATTCTTGGTCCAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAAGCTGTTTGTAATAAGTATGAACGAAATGCATTCTTGGTCCAC  1023

seq1  ACAAACTGAGAAGGATAGCAAAGAATTC  1076
      ||||||||||||||||||||||||||||
seq2  ACAAACTGAGAAGGATAGCAAAGAATTC  1051