BAC Information

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BAC

Clone NameB6Ng01-160M23
Chromosome14 (Build37)
Map Location 119,998,311 - 120,086,568
singlet/doubletdoublet
Overlap geneHs6st3, EG621324
Upstream geneAbcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, LOC619601
Downstream geneLOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160M23.bB6Ng01-160M23.g
ACCDH954086DH954087
length1,1461,078
definitionDH954086|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M23, 5' end.DH954087|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,998,311 - 119,999,418)(120,085,484 - 120,086,568)
sequence
gaattctttgttcagctctgagccccattttttaatggagttatttgatt
ttctggagtctaccttcttgagttctttatatatattggatattagtccc
ctatctgatttgggataggtaaatatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcaatttta
ttaggtcccatttatcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcaaggcttttccctac
tttctcctctataagtttcagtgtctctagttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagataggaatggatcaattcgc
atttttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctgtgtcttcctgtcttaaccctactta
tcggaccgtcctggaattcagatttcactggatcccaacaacaatcctca
cagagccataatagtcaaaagatgctgagactcagaagcattatctttat
agatacccatcctgctctcaagaagtcactttacaatgtcacaggtcatg
tgtgtttgcaagtttgttccttctagaaaaaaatcatttgggagatgaag
gaagaagtcatcaaaagttctatcgactcttcagggccaagtctgtgcaa
tatcatgcaggacctctgcaagccattttatattttgtaatcaatttgaa
gtgtatccagtttctgagccaagacattctcttctcatcatttttatgag
gccgtcttcttcagtatctattctgactcccattttctccttttccatgg
aagtacatacagctatactcttatcatgtaaaaagatgttcatcagtttt
atgcatgacacagtatgaagaatagaaaataaaatttaaaacattgtctt
catgggagttattaaataactgtcatatagccagggccagaaatagatga
ccggaatcattttccttctaataaggatggaatgatggttattcca
gaattcaaagaagagtaatcttaggccatgctacatccaagttttgacag
catgtatacagtcattccagattccatttcagagcaggtatgtcactatt
ctgtgtatgatttcattaatctagtcagtttgttctgaaattcaggtttt
ggaatgtgctaaagtcttgagttgcagaaacatcagttctggttctcaga
aggcacagtgtgtgggaggagcctctagctctgtttttgctgctaatgtg
ttccacttcttccaatgcctcctcctgtgtcccactaagaagttctcaac
atggatccatggccagaggaatttagcaactcacacctgtaatccccagg
acttgggaggtagaaccaggagaagagagggttcaaggtcaggctcaggt
atattttagttccacacctgctgggactgcgtgagctttgtcccataaag
ccaagcaagccctaagatcccaatgctatccacaatgtctaacagccaac
ttgtatttgggggcagaatcaaagtgaatattcaaaacacaacccaaaaa
gtgcatggctgaagtctcccagcaactgggaagcctctcgtggcttctga
ctgtgagaagcaacaaaatggagtcctcaggatccgagttcatctcagca
aagggttaaagggtagaatctaaaataaaaataaaaatgagggcctcatt
tgaaactatttttgaacactttcattttctttcagaacaaacaattgaca
acccaaaactggtcaccagtttcctggtgactattatgagatggttttag
tttattgagacaatgagacagtccttagtatataagacttgctatggtgt
tcctatagcaaaagttcagtcgaatatgagttgagggtagtcaaatcata
catctcaaactttaaacctttacagcaattaccagtggtattgttactgc
agcaatgttttcagagagccttccctcacaaaggttcttaaagactgagg
cattcacatccacagattctaaacacctgtgtgactgatcaatcttcctt
tcaagaaacatacaaaacatttgttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119998311_119999418
seq2: B6Ng01-160M23.b_78_1187

seq1  GGAGTTATTTGATTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATTTGATTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATATAT  50

seq1  TGGATATTAGTCCCCTATCTGATTTGGGATAGGTAAATATCCTTTCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTAGTCCCCTATCTGATTTGGGATAGGTAAATATCCTTTCCCAA  100

seq1  TCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAA  150

seq1  GCTTTGCAATTTTATTAGGTCCCATTTATCAATTCTCGATCTTACAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCAATTTTATTAGGTCCCATTTATCAATTCTCGATCTTACAGCAC  200

seq1  AAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCA  250

seq1  AGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTAGTTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTAGTTTTAT  300

seq1  GTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGA  350

seq1  ATGGATCAATTCGCATTTTTCTACATGATAACCACCAGTTGTGCCAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCAATTCGCATTTTTCTACATGATAACCACCAGTTGTGCCAGCAC  400

seq1  CATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTT  450

seq1  GTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATCTGTGTCTTCCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATCTGTGTCTTCCTGT  500

seq1  CTTAACCCTACTTATCGGACCGTCCTGGAATTCAGATTTCACTGGATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCCTACTTATCGGACCGTCCTGGAATTCAGATTTCACTGGATCCC  550

seq1  AACAACAATCCTCACAGAGCCATAATAGTCAAAAGATGCTGAGACTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATCCTCACAGAGCCATAATAGTCAAAAGATGCTGAGACTCAGA  600

seq1  AGCATTATCTTTATAGATACCCATCCTGCTCTCAAGAAGTCACTTTACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATCTTTATAGATACCCATCCTGCTCTCAAGAAGTCACTTTACAA  650

seq1  TGTCACAGGTCATGTGTGTTTGCAAGTTTGTTCCTTCTAGAAAAAAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGGTCATGTGTGTTTGCAAGTTTGTTCCTTCTAGAAAAAAATCA  700

seq1  TTTGGGAGATGAAGGAAGAAGTCATCAAAAGTTCTATCGACTCTTCAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGGGAGATGAAGGAAGAAGTCATCAAAAGTTCTATCGACTCTTCA-GG  749

seq1  GCCAAGTCTGTGCAATATCATGCAGGACCTCTGCAAGCCATTTTATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCTGTGCAATATCATGCAGGACCTCTGCAAGCCATTTTATATTT  799

seq1  TGTAATCAATTTGAAGTGTATCCAGTTTCTGAGCCAAGACATTCTCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCAATTTGAAGTGTATCCAGTTTCTGAGCCAAGACATTCTCTTCT  849

seq1  CATCA-TTTTATGAGGGCCGTCTTCTTCAGTATCTATTCTGACTCCCATT  899
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  CATCATTTTTATGA-GGCCGTCTTCTTCAGTATCTATTCTGACTCCCATT  898

seq1  TTCTCCTTTTCCATGGAAGTACATACAGCTATACTCTTATCATGTAAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTTTCCATGGAAGTACATACAGCTATACTCTTATCATGTAAAAA  948

seq1  GATGTTCATCAGTTTTATGCATGACACAAGTATGAAGAATAGAAAATAAA  999
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GATGTTCATCAGTTTTATGCATGACAC-AGTATGAAGAATAGAAAATAAA  997

seq1  ATTTAAAACA-TGTCTTCATGGGAGTTATTTAAATAACTGTTCAT-TAGC  1047
      |||||||||| ||||||||||||||||| ||||||||||| |||| ||||
seq2  ATTTAAAACATTGTCTTCATGGGAGTTA-TTAAATAACTG-TCATATAGC  1045

seq1  CCAGGCCAAGAATAGATGA-CAGAATCATTTTTCTTCTAATAA-GATGGA  1095
      |  |||||  ||||||||| | |||||||||| |||||||||| ||||||
seq2  CAGGGCCAGAAATAGATGACCGGAATCATTTTCCTTCTAATAAGGATGGA  1095

seq1  ATGATG--TATTCCA  1108
      ||||||  |||||||
seq2  ATGATGGTTATTCCA  1110

seq1: chr14_120085484_120086568
seq2: B6Ng01-160M23.g_68_1145 (reverse)

seq1  CAGAACAAATTGTTTTGTATGTTTCTTTGAAAGGAAGATTGAATTCAGTC  50
      ||||||||| ||||||||||||||| ||||||||||||||||  ||||||
seq2  CAGAACAAA-TGTTTTGTATGTTTC-TTGAAAGGAAGATTGA--TCAGTC  46

seq1  ACACAGGTGTTTAGGAATCTGT-GATGTGAATTGCCTCCAGTCTTTAAGG  99
      ||||||||||||| |||||||| |||||||| ||||| ||||||||||| 
seq2  ACACAGGTGTTTA-GAATCTGTGGATGTGAA-TGCCT-CAGTCTTTAAGA  93

seq1  ACCTTTGTGAGGGAAGGCTCTCTGAAAACATTGCTGCAGTTAACAATACC  149
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCTTTGTGAGGGAAGGCTCTCTGAAAACATTGCTGCAG-TAACAATACC  142

seq1  ACTGGTAATTGCTGTAAAGGTTTAAAGTTTTGAGATGTATGATTTGACTA  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTGGTAATTGCTGTAAAGGTTTAAAG-TTTGAGATGTATGATTTGACTA  191

seq1  CCCTCAACTCATATTCGACTGAACTTTTGCTATAGGAACACCATAGCAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAACTCATATTCGACTGAACTTTTGCTATAGGAACACCATAGCAAG  241

seq1  TCTTATATACTAAGGACTGTCTCATTGTCTCAATAAACTAAAACCATCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATACTAAGGACTGTCTCATTGTCTCAATAAACTAAAACCATCTC  291

seq1  ATAATAGTCACCAGGAAACTGGTGACCAGTTTTGGGTTGTCAATTGTTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTCACCAGGAAACTGGTGACCAGTTTTGGGTTGTCAATTGTTTG  341

seq1  TTCTGAAAGAAAATGAAAGTGTTCAAAAATAGTTTCAAATGAGG-CCTCA  398
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTGAAAGAAAATGAAAGTGTTCAAAAATAGTTTCAAATGAGGCCCTCA  391

seq1  TTTTTATTTTTATTTTAGATTCTACCCTTTAACCCTTTGCTGAGATGAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTATTTTAGATTCTACCCTTTAACCCTTTGCTGAGATGAAC  441

seq1  TCGGATCCTGAGGACTCCATTTTGTTGCTTCTCACAGTCAGAAGCCACGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATCCTGAGGACTCCATTTTGTTGCTTCTCACAGTCAGAAGCCACGA  491

seq1  GAGGCTTCCCAGTTGCTGGGAGACTTCAGCCATGCACTTTTTGGGTTGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTCCCAGTTGCTGGGAGACTTCAGCCATGCACTTTTTGGGTTGTG  541

seq1  TTTTGAATATTCACTTTGATTCTGCCCCCAAATACAAGTTGGCTGTTAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATATTCACTTTGATTCTGCCCCCAAATACAAGTTGGCTGTTAGA  591

seq1  CATTGTGGATAGCATTGGGATCTTAGGGCTTGCTTGGCTTTATGGGACAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGATAGCATTGGGATCTTAGGGCTTGCTTGGCTTTATGGGACAA  641

seq1  AGCTCACGCAGTCCCAGCAGGTGTGGAACTAAAATATACCTGAGCCTGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACGCAGTCCCAGCAGGTGTGGAACTAAAATATACCTGAGCCTGAC  691

seq1  CTTGAACCCTCTCTTCTCCTGGTTCTACCTCCCAAGTCCTGGGGATTACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACCCTCTCTTCTCCTGGTTCTACCTCCCAAGTCCTGGGGATTACA  741

seq1  GGTGTGAGTTGCTAAATTCCTCTGGCCATGGATCCATGTTGAGAACTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAGTTGCTAAATTCCTCTGGCCATGGATCCATGTTGAGAACTTCT  791

seq1  TAGTGGGACACAGGAGGAGGCATTGGAAGAAGTGGAACACATTAGCAGCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGACACAGGAGGAGGCATTGGAAGAAGTGGAACACATTAGCAGCA  841

seq1  AAAACAGAGCTAGAGGCTCCTCCCACACACTGTGCCTTCTGAGAACCAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGCTAGAGGCTCCTCCCACACACTGTGCCTTCTGAGAACCAGA  891

seq1  ACTGATGTTTCTGCAACTCAAGACTTTAGCACATTCCAAAACCTGAATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTTTCTGCAACTCAAGACTTTAGCACATTCCAAAACCTGAATTT  941

seq1  CAGAACAAACTGACTAGATTAATGAAATCATACACAGAATAGTGACATAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAACTGACTAGATTAATGAAATCATACACAGAATAGTGACATAC  991

seq1  CTGCTCTGAAATGGAATCTGGAATGACTGTATACATGCTGTCAAAACTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGAAATGGAATCTGGAATGACTGTATACATGCTGTCAAAACTTG  1041

seq1  GATGTAGCATGGCCTAAGATTACTCTTCTTTGAATTC  1085
      |||||||||||||||||||||||||||||||||||||
seq2  GATGTAGCATGGCCTAAGATTACTCTTCTTTGAATTC  1078