BAC Information

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BAC

Clone NameB6Ng01-160P05
Chromosome14 (Build37)
Map Location 55,043,589 - 55,044,723
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7
Downstream geneMrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160P05.bB6Ng01-160P05.g
ACCDH954194DH954195
length1,2111,115
definitionDH954194|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P05, 5' end.DH954195|Mus musculus domesticus DNA, BAC clone: B6Ng01-160P05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactcttgcacctgcgtacaggacttgtttactagttaggcacag
cggaggcccgcaccatcttataatggcgattgctcgctgcacaaacggct
ctcctcagagattactggcggcacacatgcgattgcttgcagcacgtacc
ggctctccacatctccccctttttattttattaaaatttaaggctggtct
aggcctgtgtaattatgcccatccgctgtggctcctgtcttaggtcgttc
ctccaatgtcacagcctttcctgtcatagggtaaccctatcgccaccggg
ccccgtgtcttaggttgatctgtgcatgaggaaagttgcccgtccctgga
taccgcagtgctatatgacattaactactaaatgacctagggcgaactct
ataaaagaggccagccaccaatgtcaattaattttttagcatagatagcc
agatttcaggggaggccccttgctcaatggtagcaagtgcttgagttatc
acaaccttgtcacgtgtttgttgggttctgagcttgcaaaccaaccagag
catgaccacaagtccacagcaggtgtcaacgccaaataaacctaccccca
cccattccttaaaataagaaaaggcagatgaaatccaggaggagaggccc
tctgtcaatgacaggtccactcgtgtcgagttgatctttagaacggccgc
tctcagggcctcaagggtctcatcgaatctttcagaccagtttcctgcaa
gatataaagaaagctgtctagacagattagctgcataagtaaaattttca
tattggacactggtaatgcacagagcttccagttttctttcacaacccaa
ctgggtcatctggtatagaacacctatctgttcctcgccaggtcaaggcg
ctgattcaaaatcatcagccctccctttaacttggtactagcagagtttg
gacagtgatggcatcagcagatctgctgaaagctgattatttgtgctgat
gaccgcactacatagcgtacctgcagctgtagcagcagctgcactgcctg
aaatgcttgatccgcagcagtatgcatctcttcttttgttcaaacataga
taggtggagggtttcacagacatgaatcaactggaatcgtgcacatgcat
ggtatcttgtacactccacattggaatcctaacagagaaatctctgcgaa
acgagataact
gaattcaggtccatccccaacaaacatatattcaaatgttcccaaatcag
gcatttctgtattaagggcccaagagttggacagattccctggtaggcag
acagataaaagaccatgactagataatgatgaatttccacgatgtctggt
ttcttcctctcctcctagcctgagacaaaagcctggcagcataaaacaaa
gaatcttgtgggctttctctccctcccagtagatctgctgatagactgac
tccaggaattcaaggctggattggtacatgttccaagacagttgtgggcc
aatcagccatcctttttctctttaaatttaccaaccctaaattaggggag
gaaaacttcagagacttaaaaactccagccttggaaaaggactagatttt
cagtcttctgagtcccccttcttggctttgcaaaggcacttttctctgtg
tgtgatgcatgtatatgttgcttcacccttcaataaagcctttcttcagt
tgctgattctgtctgagctgtttgcgatgttggagatttctccactgcta
cctgtcacatctgaggatttcctgcctattaattctttagctgacagtag
aaacaagaccgatcaaggcccgtgatgctaacaataccaagcatttcaaa
taaaggatattcaacctataagctagagcttcctttctccccagcacctc
ttttgagataggcatcttgctaagtagctctggatgacccagtgcctgct
aggtagccctggctgccctcaatgctcctgcatcaatcagccttttgaat
actgggattaccagttagtaccaccatgcctggcttgctttatctctttg
gtatttaatttttgcctttgaggaactcctttttccttcctttccctttt
ttattcctccatctttcctccctagcctttcctttcccattatgagacag
gtctgctctgtaacccagactggtctagaaactctgagtctagttctctg
tacagaaattgattattatacatagaaaacctattgctaacggaatcaga
gctgtcgatgcagttggtgttccctgaagtaagcagtaggtgtgccctct
aaagtcaaatagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55043589_55044723
seq2: B6Ng01-160P05.g_68_1182 (reverse)

seq1  TATCTATTTGAAACTTTTAGA-GGCACACCCTAACTGCTTCCCTTCAGGA  49
      |||||||||||    |||||| ||||||||   |||||||  ||||||| 
seq2  TATCTATTTGA---CTTTAGAGGGCACACC--TACTGCTT-ACTTCAGGG  44

seq1  CACACCCAACTGCATCTGACAGCTTCTGTATTTCGTTAGCAATTAGGTTT  99
       ||| ||||||||||| |||||| |||| ||| ||||||||| |||||||
seq2  AACA-CCAACTGCATC-GACAGC-TCTG-ATTCCGTTAGCAA-TAGGTTT  89

seq1  TCTAATGTATAATAATCAAATATCCTGTAACAGAGAACTAAGAACTCAAG  149
      ||| |||||||||||||||   | |||| |||||||||||   |||| ||
seq2  TCT-ATGTATAATAATCAA--TTTCTGT-ACAGAGAACTA--GACTC-AG  132

seq1  AGTTTCTAGACCAGTCTGGGTTACAGAGCAAGACCCTGTCTCATAATGGG  199
      ||||||||||||||||||||||||||||| ||| ||||||||||||||||
seq2  AGTTTCTAGACCAGTCTGGGTTACAGAGC-AGA-CCTGTCTCATAATGGG  180

seq1  AAAGGAAAGGCTAGGGAGGAAAGATGGAGGAAATAAAAAAGGGAAAGGAA  249
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGGAAAGGCTAGGGAGGAAAGATGGAGG-AATAAAAAAGGGAAAGGAA  229

seq1  GGAAAAAGGAGTTCCTCAAAGGCAAAAA-TAAATACCAAAGAGAATAAAG  298
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  GGAAAAAGGAGTTCCTCAAAGGCAAAAATTAAATACCAAAGAG-ATAAAG  278

seq1  CAAGCCAGGCATGGTGGTACTAACTGGTAATCCCAGTATTCAAAAGGCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGGCATGGTGGTACTAACTGGTAATCCCAGTATTCAAAAGGCTG  328

seq1  ATTGATGCAGGAGCATTGAGGGCAGCCAGGGCTACCTAGCAGGCACTGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGCAGGAGCATTGAGGGCAGCCAGGGCTACCTAGCAGGCACTGGG  378

seq1  TCATCCAGAGCTACTTAGCAAGATGCCTATCTCAAAAGAGGTGCTGGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGAGCTACTTAGCAAGATGCCTATCTCAAAAGAGGTGCTGGGGA  428

seq1  GAAAGGAAGCTCTAGCTTATAGGTTGAATATCCTTTATTTGAAATGCTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGCTCTAGCTTATAGGTTGAATATCCTTTATTTGAAATGCTTG  478

seq1  GTATTGTTAGCATCACGGGCCTTGATCGGTCTTGTTTCTACTGTCAGCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTAGCATCACGGGCCTTGATCGGTCTTGTTTCTACTGTCAGCTA  528

seq1  AAGAATTAATAGGCAGGAAATCCTCAGATGTGACAGGTAGCAGTGGAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAATAGGCAGGAAATCCTCAGATGTGACAGGTAGCAGTGGAGAA  578

seq1  ATCTCCAACATCGCAAACAGCTCAGACAGAATCAGCAACTGAAGAAAGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAACATCGCAAACAGCTCAGACAGAATCAGCAACTGAAGAAAGGC  628

seq1  TTTATTGAAGGGTGAAGCAACATATACATGCATCACACACAGAGAAAAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAAGGGTGAAGCAACATATACATGCATCACACACAGAGAAAAGT  678

seq1  GCCTTTGCAAAGCCAAGAAGGGGGACTCAGAAGACTGAAAATCTAGTCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCAAAGCCAAGAAGGGGGACTCAGAAGACTGAAAATCTAGTCCT  728

seq1  TTTCCAAGGCTGGAGTTTTTAAGTCTCTGAAGTTTTCCTCCCCTAATTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGGCTGGAGTTTTTAAGTCTCTGAAGTTTTCCTCCCCTAATTTA  778

seq1  GGGTTGGTAAATTTAAAGAGAAAAAGGATGGCTGATTGGCCCACAACTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGTAAATTTAAAGAGAAAAAGGATGGCTGATTGGCCCACAACTGT  828

seq1  CTTGGAACATGTACCAATCCAGCCTTGAATTCCTGGAGTCAGTCTATCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACATGTACCAATCCAGCCTTGAATTCCTGGAGTCAGTCTATCAG  878

seq1  CAGATCTACTGGGAGGGAGAGAAAGCCCACAAGATTCTTTGTTTTATGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTACTGGGAGGGAGAGAAAGCCCACAAGATTCTTTGTTTTATGCT  928

seq1  GCCAGGCTTTTGTCTCAGGCTAGGAGGAGAGGAAGAAACCAGACATCGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTTTTGTCTCAGGCTAGGAGGAGAGGAAGAAACCAGACATCGTG  978

seq1  GAAATTCATCATTATCTAGTCATGGTCTTTTATCTGTCTGCCTACCAGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATCATTATCTAGTCATGGTCTTTTATCTGTCTGCCTACCAGGG  1028

seq1  AATCTGTCCAACTCTTGGGCCCTTAATACAGAAATGCCTGATTTGGGAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCCAACTCTTGGGCCCTTAATACAGAAATGCCTGATTTGGGAAC  1078

seq1  ATTTGAATATATGTTTGTTGGGGATGGACCTGAATTC  1135
      |||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATATATGTTTGTTGGGGATGGACCTGAATTC  1115