BAC Information

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BAC

Clone NameB6Ng01-161B15
Chromosome14 (Build37)14 (Build37)
Map Location 56,049,059 - 56,049,08887,053,746 - 87,054,726
singlet/doubletsingletsinglet
Overlap geneEG667952
Upstream geneMmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729
Downstream geneDhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161B15.bB6Ng01-161B15.g
ACCDH954307DH954308
length314982
definitionDH954307|Mus musculus domesticus DNA, BAC clone: B6Ng01-161B15, 5' end.DH954308|Mus musculus domesticus DNA, BAC clone: B6Ng01-161B15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,049,059 - 56,049,088)(87,053,746 - 87,054,726)
sequence
aagaccaaacccaggtacacgatactccaagtggatgctcacagtcatct
ataggagggatcacagggcccccaatataggagcaatatagagaaagtac
ccaagagctgaaggggtctgcaactctataggtggaacaacaacatgaac
taatcagtacccccagagctcgtgtctctagctgcatatgtagcattgga
aagagaggcctgttggtctagcaaactttatatgccccagtacaggggaa
agccagggacaagaagtgggagtgagtaggtaggggagcagggcaggggg
agggtataggggac
gaattctctctctgatgtgattttgctaagactaggacttttcagaaaag
gaaactaagccaaataactcaaaacctgaggagtcacaatggagaagctg
gcaagtaaatggaaatgatgatgacaaaaactcccaagggcagaagaaga
tggggggcgggggggggatacacagaaaaggagcagactggccccacagc
atgtcctgaaataaccacagatcgccttaaaacaagaagaccaggcgccc
aagacaggcagagcagtaaggtggctgagtcaggaggtggaacccagctc
tctctccctgaatggcaagaggccaacagacccaaggccaacagaccttg
ggtaggcatgcccgagagctaggatgaagagctcacgagggactgactga
gtgcctgctcagagctcatttcctagtggagagcctatagcccttcacta
agggctgtgcaatgatgagggtttttaaatccataatactcctttagcct
aactgtgcatgaaaactctagcagtggcctttaagatagtttctatggct
ctgcttctaagcataagactgttcatttgaattaacaataatgatagtta
atatttgaagccagcgtaagaaggattctccagatttttggtaaaatatc
atttctagggaggtctatgagagtcattttggggaagggtagttagcctt
gatatcgactgaataaagattgttcttcctagtatgatggacaacatctc
atggcgcaacaataaaacacattccatattctgttctcaaacattagctc
ttctgtgcttaggcccttgatcttggagtacaactggcaatttcccatgc
ctccagcttacacataggtaggattcttagtctccataaatcatccaagc
cttttttaagcaaatatatatttgttgttgtatataatatataataccat
aatgtatgcagaattattaattatatatacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56049059_56049088
seq2: B6Ng01-161B15.b_336_365 (reverse)

seq1  GTCCCCTATACCCTCCCCCTGCCCTGCTCC  30
      ||||||||||||||||||||||||||||||
seq2  GTCCCCTATACCCTCCCCCTGCCCTGCTCC  30

seq1: chr14_87053746_87054726
seq2: B6Ng01-161B15.g_68_1049 (reverse)

seq1  TAGTATATATAATTATATATTACTGCATACATTAT-GTATTATATATTAT  49
      ||||||||||||||| ||| | ||||||||||||| ||||||||||||||
seq2  TAGTATATATAATTA-ATAATTCTGCATACATTATGGTATTATATATTAT  49

seq1  ATACAACAACAAATATATA-TTGCTTAAAATAAGGCTTGGATGA-TTATG  97
      ||||||||||||||||||| |||||||||| ||||||||||||| |||||
seq2  ATACAACAACAAATATATATTTGCTTAAAA-AAGGCTTGGATGATTTATG  98

seq1  GAGACTGAGAATCCTA-CTATGTGTAAGCTGGAGGCATGGGAAATTGCCA  146
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGACTAAGAATCCTACCTATGTGTAAGCTGGAGGCATGGGAAATTGCCA  148

seq1  GTTGTACTCCAAGATCAAGGGCCTAAGCACAGAAGAGCTAATGTTTGAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACTCCAAGATCAAGGGCCTAAGCACAGAAGAGCTAATGTTTGAGA  198

seq1  ACAGAATATGGAATGTGTTTTATTGTTTGCGCCATGAGATGTTGTCCATC  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACAGAATATGGAATGTGTTTTATTG-TTGCGCCATGAGATGTTGTCCATC  247

seq1  ATACTAGGAAGAACAATCTTTATTCAGTCGATATCAAGGCTAACTACCCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGGAAGAACAATCTTTATTCAGTCGATATCAAGGCTAACTACCCT  297

seq1  TCCCCAGAATGACTCTCATAGACCTCCCTAGAAATGATATTTTACCAAAA  346
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAAATGACTCTCATAGACCTCCCTAGAAATGATATTTTACCAAAA  347

seq1  ATCTGGAGAATCCTTCTTACGCTGGCTTCAAATATTAACTATCATTATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAGAATCCTTCTTACGCTGGCTTCAAATATTAACTATCATTATTG  397

seq1  TTAATTCAAATGAACAGTCTTATGCTTAGAAGCAGAGCCATAGAAACTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCAAATGAACAGTCTTATGCTTAGAAGCAGAGCCATAGAAACTAT  447

seq1  CTTAAAGGCCACTGCTAGAGTTTTCATGCACAGTTAGGCTAAAGGAGTAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGCCACTGCTAGAGTTTTCATGCACAGTTAGGCTAAAGGAGTAT  497

seq1  TATGGATTTAAAAACCCTCATCATTGCACAGCCCTTAGTGAAGGGCTATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTTAAAAACCCTCATCATTGCACAGCCCTTAGTGAAGGGCTATA  547

seq1  GGCTCTCCACTAGGAAATGAGCTCTGAGCAGGCACTCAGTCAGTCCCTCG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCACTAGGAAATGAGCTCTGAGCAGGCACTCAGTCAGTCCCTCG  597

seq1  TGAGCTCTTCATCCTAGCTCTCGGGCATGCCTACCCAAGGTCTGTTGGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTTCATCCTAGCTCTCGGGCATGCCTACCCAAGGTCTGTTGGCC  647

seq1  TTGGGTCTGTTGGCCTCTTGCCATTCAGGGAGAGAGAGCTGGGTTCCACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTGTTGGCCTCTTGCCATTCAGGGAGAGAGAGCTGGGTTCCACC  697

seq1  TCCTGACTCAGCCACCTTACTGCTCTGCCTGTCTTGGGCGCCTGGTCTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTCAGCCACCTTACTGCTCTGCCTGTCTTGGGCGCCTGGTCTTC  747

seq1  TTGTTTTAAGGCGATCTGTGGTTATTTCAGGACATGCTGTGGGGCCAGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAAGGCGATCTGTGGTTATTTCAGGACATGCTGTGGGGCCAGTC  797

seq1  TGCTCCTTTTCTGTGTATCCCCCCCCCGCCCCCCATCTTCTTCTGCCCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTTTCTGTGTATCCCCCCCCCGCCCCCCATCTTCTTCTGCCCTT  847

seq1  GGGAGTTTTTGTCATCATCATTTCCATTTACTTGCCAGCTTCTCCATTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTTTGTCATCATCATTTCCATTTACTTGCCAGCTTCTCCATTGT  897

seq1  GACTCCTCAGGTTTTGAGTTATTTGGCTTAGTTTCCTTTTCTGAAAAGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCAGGTTTTGAGTTATTTGGCTTAGTTTCCTTTTCTGAAAAGTC  947

seq1  CTAGTCTTAGCAAAATCACATCAGAGAGAGAATTC  981
      |||||||||||||||||||||||||||||||||||
seq2  CTAGTCTTAGCAAAATCACATCAGAGAGAGAATTC  982