BAC Information

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BAC

Clone NameB6Ng01-161C13
Chromosome4 (Build37)14 (Build37)
Map Location 12,099,342 - 12,100,480106,622,509 - 106,622,584
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTrp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik
Downstream geneLOC545592, OTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161C13.bB6Ng01-161C13.g
ACCDH954351DH954352
length1,116127
definitionDH954351|Mus musculus domesticus DNA, BAC clone: B6Ng01-161C13, 5' end.DH954352|Mus musculus domesticus DNA, BAC clone: B6Ng01-161C13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,099,342 - 12,100,480)(106,622,509 - 106,622,584)
sequence
gaattccaggtgcttaagcctgtaatgtagccaccaggctatgtgactac
ctcaatggtggtagaggtgtgggtcacaaggatacatgcactaccatggc
atgcaggcccagaacaaggagggagcaattcttactcctactggtcttaa
gatgagcttttagggggtggggttggacacatctggctccctacctccca
attgcagaacttatttgctcagcaccatagcatttagtgaaattatactg
ctagtaacagactcgccacctggaaaggcaggaaagaacctagctgaaca
gaaccaaagaagaaccatctgtgtcgtttacagaatcctaaactgactag
tggagttgtggaagccactaggccttataatttgtttatacaacgaaacc
tgacacggtagcacatttctgggctgtgttatatgtgtttgactgtttgg
ctagctttatcattccaccaaggctgtgagcactgtaagagcaaagactt
tattctcagaaattatgggcatttgagaagtagacaaagcttgaagttgg
accccaagttcactcggaagagaagactccctctcagaagctagaggaag
gctctgggttatctgtgactcttccaattggggaaccttcattcaggccc
atacctcgactgggtctaacaatctttttcacaaagtagaaactcagtta
cctgcaagagggggaacagatggcattaaagaccagtaaagatgagggag
taagcactggtgtgcttttttttctgtttctgttttgttgttactgttct
tatttttatgttgtattgtgttgtttgtttctgttggtaatttgaccaaa
gttagagttaccgagaggagggaacatttcagaaaatgtccctatcagat
tgacctgtaggctgttttcttgattgatgattgacatggaagggtagaca
gtattgcccctgtgcagagtcctggggtaattagaaagtcaatcaaatag
gccagcagcgtgtgctacatggcctctgcttcaattctgcctcaggttcc
tgtcctgagttcctagagactggactgggtatgtcgccaaggatctttcc
ttctccacttgatttt
cagggccaaaaagggggagtgggtgggcaggggagtgggggtgggtggat
attttttattttatttaagtctttttaaatcactgtaatttgttccatcc
ctaaggtacgactatttgtaattagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12099342_12100480
seq2: B6Ng01-161C13.b_48_1163 (reverse)

seq1  AAAATCAAGTTGAGGAGGAAAGGATTTCTTTGGCTGACATATCCCAAGTC  50
      |||||||||| ||| |||||||    || ||||| ||||||  || ||||
seq2  AAAATCAAGTGGAGAAGGAAAG---ATCCTTGGC-GACATA--CCCAGTC  44

seq1  ACAGTTCTTTAAGGAACTCAGGGCAGGAACCTGGAGGCAGGAATTGAAGC  100
       ||| ||| | ||||||||||| ||||||||| |||||| ||||||||||
seq2  -CAG-TCTCT-AGGAACTCAGGACAGGAACCT-GAGGCA-GAATTGAAGC  89

seq1  AGAGGCCATGTAGCAACACTGCTGGCTGGCCTATTTGATTGACTTTCTTA  150
      |||||||||||||| |||| ||| |||||||||||||||||||||||| |
seq2  AGAGGCCATGTAGC-ACAC-GCT-GCTGGCCTATTTGATTGACTTTCTAA  136

seq1  TATACCCCAGGACCTCTTGCACAGGGGCAATACTGTCTACCCTTCCATGT  200
      | |||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  T-TACCCCAGGA-CTC-TGCACAGGGGCAATACTGTCTACCCTTCCATGT  183

seq1  CAATCATCAATCAAGAAAACAGCCTACAGGTCAATCTGATAGGGACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCAATCAAGAAAACAGCCTACAGGTCAATCTGATAGGGACATTT  233

seq1  TCTG-AATGTTCCCTCTTCTCGGGTAACTCTAACTTTGGTCAAATTAACC  299
      |||| ||||||||||| |||| |||||||||||||||||||||||||  |
seq2  TCTGAAATGTTCCCTCCTCTC-GGTAACTCTAACTTTGGTCAAATTA--C  280

seq1  AAACAGAAACAAACAAACAACAATAACAACAATAAAAATAAGAACAGTAA  349
       |||||||||||||||   ||||| ||||| |||||||||||||||||||
seq2  CAACAGAAACAAACAA--CACAAT-ACAAC-ATAAAAATAAGAACAGTAA  326

seq1  CAACAAAACAGAAACAGAAAAAAAAGCACACCAGTGCTTACTCCCTCATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAACAGAAACAGAAAAAAAAGCACACCAGTGCTTACTCCCTCATC  376

seq1  TTTACTGGTCTTTAATGCCATCTGTTCCCCCTCTTGCAGGTAACTGAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGGTCTTTAATGCCATCTGTTCCCCCTCTTGCAGGTAACTGAGTT  426

seq1  TCTACTTTGTGAAAAAGATTGTTAGACCCAGTCGAGGTATGGGCCTGAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTGTGAAAAAGATTGTTAGACCCAGTCGAGGTATGGGCCTGAAT  476

seq1  GAAGGTTCCCCAATTGGAAGAGTCACAGATAACCCAGAGCCTTCCTCTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTCCCCAATTGGAAGAGTCACAGATAACCCAGAGCCTTCCTCTAG  526

seq1  CTTCTGAGAGGGAGTCTTCTCTTCCGAGTGAACTTGGGGTCCAACTTCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGAGGGAGTCTTCTCTTCCGAGTGAACTTGGGGTCCAACTTCAA  576

seq1  GCTTTGTCTACTTCTCAAATGCCCATAATTTCTGAGAATAAAGTCTTTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTCTACTTCTCAAATGCCCATAATTTCTGAGAATAAAGTCTTTGC  626

seq1  TCTTACAGTGCTCACAGCCTTGGTGGAATGATAAAGCTAGCCAAACAGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGTGCTCACAGCCTTGGTGGAATGATAAAGCTAGCCAAACAGTC  676

seq1  AAACACATATAACACAGCCCAGAAATGTGCTACCGTGTCAGGTTTCGTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATATAACACAGCCCAGAAATGTGCTACCGTGTCAGGTTTCGTTG  726

seq1  TATAAACAAATTATAAGGCCTAGTGGCTTCCACAACTCCACTAGTCAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAAATTATAAGGCCTAGTGGCTTCCACAACTCCACTAGTCAGTT  776

seq1  TAGGATTCTGTAAACGACACAGATGGTTCTTCTTTGGTTCTGTTCAGCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTCTGTAAACGACACAGATGGTTCTTCTTTGGTTCTGTTCAGCTA  826

seq1  GGTTCTTTCCTGCCTTTCCAGGTGGCGAGTCTGTTACTAGCAGTATAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCCTGCCTTTCCAGGTGGCGAGTCTGTTACTAGCAGTATAATT  876

seq1  TCACTAAATGCTATGGTGCTGAGCAAATAAGTTCTGCAATTGGGAGGTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAATGCTATGGTGCTGAGCAAATAAGTTCTGCAATTGGGAGGTAG  926

seq1  GGAGCCAGATGTGTCCAACCCCACCCCCTAAAAGCTCATCTTAAGACCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGATGTGTCCAACCCCACCCCCTAAAAGCTCATCTTAAGACCAG  976

seq1  TAGGAGTAAGAATTGCTCCCTCCTTGTTCTGGGCCTGCATGCCATGGTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTAAGAATTGCTCCCTCCTTGTTCTGGGCCTGCATGCCATGGTAG  1026

seq1  TGCATGTATCCTTGTGACCCACACCTCTACCACCATTGAGGTAGTCACAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATCCTTGTGACCCACACCTCTACCACCATTGAGGTAGTCACAT  1076

seq1  AGCCTGGTGGCTACATTACAGGCTTAAGCACCTGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTGGCTACATTACAGGCTTAAGCACCTGGAATTC  1116

seq1: chr14_106622509_106622584
seq2: B6Ng01-161C13.g_124_199

seq1  TTTTTTTTTTTATTTAGGTCTTTTTAAATCACTGTAATTTGTGCAATCCC  50
      |||||| ||||||||| ||||||||||||||||||||||||| | |||||
seq2  TTTTTTATTTTATTTAAGTCTTTTTAAATCACTGTAATTTGTTCCATCCC  50

seq1  TAGGGTACGACTATTTGTAATTAGAC  76
      || |||||||||||||||||||||||
seq2  TAAGGTACGACTATTTGTAATTAGAC  76