BAC Information

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BAC

Clone NameB6Ng01-162A18
Chromosome14 (Build37)
Map Location 66,419,176 - 66,532,298
singlet/doubletdoublet
Overlap genePbk, Esco2, Ccdc25
Upstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5
Downstream geneScara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162A18.bB6Ng01-162A18.g
ACCDH954990DH954991
length5471,158
definitionDH954990|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A18, 5' end.DH954991|Mus musculus domesticus DNA, BAC clone: B6Ng01-162A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,419,176 - 66,419,728)(66,531,134 - 66,532,298)
sequence
cattgtgttggaatgtcctagcctaggagaacaaggaggcacaaccatga
cggtggactgtgtgtggagaaaagaggggcctggattgagagtggaaggt
gaggtgacgctaatccagacaggaagggcatttgttgtcaagaagagagt
gtgtgtttaagccagagacacgaggaaaaccatgggctccccaggcacag
ccagagacttagtctttaccagagcccagggacccagtgaggcaaactcc
aggaaaggacactttgggtcagatcacaaagacagagaagttttgctcag
aagttgggacaagggcatgacaggatgaagtttccagacaaaaagactaa
gctgacttcaaagggaaaagcctcaagaagggaggaggtggtaaattgga
aggttaggtgggagtggctggagggctggttgtcctgggagagaaaggaa
gagacttaaagacgcaggagaaagagaggtcagaactgagatggggtagg
taataaaggtgtcttaggggcctggtgactgtgatgaaacactttga
gaattccaggttggccttgagcttactttgtagtggagggtgatctctag
ctctgatcctcctgcctccacatcctgagtgctgggattacaagcatgtg
ccatcatgcttggttcgtaagaggaaagtctagaacagagaaggtcaaca
aagtcaaagactatgaaaactgagacatgccagagcagtggttctcggcc
ttcctgatgctgcgatcctttaatacagtttctatattgtggtggtcccc
aaccataaaattatttttgttgctacttcataactgtagttttgctactg
ttatgaatcataatggaattatctgtgttttccgattgtgttaggcaatc
cctatgaaagggtcatctgaccccaaagaggtcgtgatccataggctagg
aactgcttccctaggcaatgttgactagaaaaagttcatgaaggtataaa
tagtgctatcatgtgaaaggtgaaattaagaggaattatgaaaatccaat
gccaataactttgaaaactcagatgaaataaacaaatttgtaggaaaata
taactcaccaagtaaactcaagaaggaaaaaaatcctaaaaggtctgaag
gcgtgtaagtggtttaaaatgctcccacaagaaaaacagcaggtccgtgg
agaaagacttacaggcaaaccctacgaaaacactcaaagacaacgttcca
tccaacacaaactcttccaaagaacaggaaaaatggggcgcagtttcctg
tcttgttctatgaggatagaaagaaaatatttttttcaaaatcagaaaat
aaaatagatacagaaacaaggcttagtgaattgaagtcctgaaaacaagt
tttacaaaattttatcaaatgaagaataaatatattaggcctaatactta
gtacctaccaaaaaatatcgcacaacaagaatctttcctaaagatgaaac
ttgaaagtgttccctttagaagagcaaatgctgaatgtttccttgtagga
caccatagcaaacttgtcactaagaaggttgtctgccaaacagaaagaaa
gaaaacagaccaaataatattcggcatctataccaccctccagttacagc
ctaacatccaagatagaaatagtgtaaccacacctcatgaaattgagagt
gtgatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_66419176_66419728
seq2: B6Ng01-162A18.b_47_599

seq1  GAATTCCATTGTGTTGGAATGTCCTAGCCTAGGAGAACAAGGAGGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTGTTGGAATGTCCTAGCCTAGGAGAACAAGGAGGCACAA  50

seq1  CCATGACGGTGGACTGTGTGTGGAGAAAAGAGGGGCCTGGATTGAGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACGGTGGACTGTGTGTGGAGAAAAGAGGGGCCTGGATTGAGAGTG  100

seq1  GAAGGTGAGGTGACGCTAATCCAGACAGGAAGGGCATTTGTTGTCAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGAGGTGACGCTAATCCAGACAGGAAGGGCATTTGTTGTCAAGAA  150

seq1  GAGAGTGTGTGTTTAAGCCAGAGACACGAGGAAAACCATGGGCTCCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTGTGTTTAAGCCAGAGACACGAGGAAAACCATGGGCTCCCCAG  200

seq1  GCACAGCCAGAGACTTAGTCTTTACCAGAGCCCAGGGACCCAGTGAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCAGAGACTTAGTCTTTACCAGAGCCCAGGGACCCAGTGAGGCA  250

seq1  AACTCCAGGAAAGGACACTTTGGGTCAGATCACAAAGACAGAGAAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGGAAAGGACACTTTGGGTCAGATCACAAAGACAGAGAAGTTTT  300

seq1  GCTCAGAAGTTGGGACAAGGGCATGACAGGATGAAGTTTCCAGACAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAAGTTGGGACAAGGGCATGACAGGATGAAGTTTCCAGACAAAAA  350

seq1  GACTAAGCTGACTTCAAAGGGAAAAGCCTCAAGAAGGGAGGAGGTGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGCTGACTTCAAAGGGAAAAGCCTCAAGAAGGGAGGAGGTGGTAA  400

seq1  ATTGGAAGGTTAGGTGGGAGTGGCTGGAGGGCTGGTTGTCCAGGCAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  ATTGGAAGGTTAGGTGGGAGTGGCTGGAGGGCTGGTTGTCCTGGGAGAGA  450

seq1  AAGGAAGAGACTTAAAGACGCAGGAGAAAGAGAGGTCAGAACAGAGATGG  500
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGGAAGAGACTTAAAGACGCAGGAGAAAGAGAGGTCAGAACTGAGATGG  500

seq1  GGTAGGTAATAAAGGTGTCTTAGGGGCCTGGTAACTGTGATGAAACACTA  550
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  GGTAGGTAATAAAGGTGTCTTAGGGGCCTGGTGACTGTGATGAAACACTT  550

seq1  TGA  553
      |||
seq2  TGA  553

seq1: chr14_66531134_66532298
seq2: B6Ng01-162A18.g_68_1225 (reverse)

seq1  GCTATCAC---CTCAATATCATGAAGGTGTGGTTTAACATATTTCTATCT  47
      ||||||||   |||||| ||||| ||||||||||  || |||||||||| 
seq2  GCTATCACACTCTCAATTTCATG-AGGTGTGGTTACAC-TATTTCTATC-  47

seq1  TTGAATGTTA-GCTGTAAACTGGAGGGTGGTATAGATGCCGGATTATATT  96
      ||| |||||| ||||| |||||||||||||||||||||||| ||  ||||
seq2  TTGGATGTTAGGCTGT-AACTGGAGGGTGGTATAGATGCCGAATATTATT  96

seq1  TTGGGTCTGTTTTCTTTTCTTTCTTGTTTTGGCAAGAC-ACCTTCTTAGT  145
      |  ||||||||||| |||||||||   |||||| |||| |||||||||||
seq2  T--GGTCTGTTTTC-TTTCTTTCT--GTTTGGC-AGACAACCTTCTTAGT  140

seq1  GACAAGTTTGCTATGGTGTCCTACAAGGAAACATTCAGCATTTGGCTCTT  195
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GACAAGTTTGCTATGGTGTCCTACAAGGAAACATTCAGCATTT-GCTCTT  189

seq1  CTAAAGGGAACACTTTCAAGTTTTCATCTTTAGGAAAGATTCTTGTTGTG  245
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTAAAGGGAACACTTTCAAG-TTTCATCTTTAGGAAAGATTCTTGTTGTG  238

seq1  CGATATTTTTTGGTAGGTACTAAGTATTAGGCCTAATATATTTATTCTTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATATTTTTTGGTAGGTACTAAGTATTAGGCCTAATATATTTATTCTTC  288

seq1  ATTTGATAAAATTTTGTAAAACTTGTTTTCAGGACTTCAATTCACTAAGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAAAATTTTGTAAAACTTGTTTTCAGGACTTCAATTCACTAAGC  338

seq1  CTTGTTTCTGTATCTATTTTATTTTCTGATTTTGAAAAAAATATTTTCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCTGTATCTATTTTATTTTCTGATTTTGAAAAAAATATTTTCTT  388

seq1  TCTATCCTCATAGAACAAGACAGGAAACTGCGCCCCATTTTTCCTGTTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTCATAGAACAAGACAGGAAACTGCGCCCCATTTTTCCTGTTCT  438

seq1  TTGGAAGAGTTTGTGTTGGATGGAACGTTGTCTTTGAGTGTTTTCGTAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAGTTTGTGTTGGATGGAACGTTGTCTTTGAGTGTTTTCGTAGG  488

seq1  GTTTGCCTGTAAGTCTTTCTCCACGGACCTGCTGTTTTTCTTGTGGGAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTGTAAGTCTTTCTCCACGGACCTGCTGTTTTTCTTGTGGGAGC  538

seq1  ATTTTAAACCACTTACACGCCTTCAGACCTTTTAGGATTTTTTTCCTTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAACCACTTACACGCCTTCAGACCTTTTAGGATTTTTTTCCTTCT  588

seq1  TGAGTTTACTTGGTGAGTTATATTTTCCTACAAATTTGTTTATTTCATCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTACTTGGTGAGTTATATTTTCCTACAAATTTGTTTATTTCATCT  638

seq1  GAGTTTTCAAAGTTATTGGCATTGGATTTTCATAATTCCTCTTAATTTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCAAAGTTATTGGCATTGGATTTTCATAATTCCTCTTAATTTCA  688

seq1  CCTTTCACATGATAGCACTATTTATACCTTCATGAACTTTTTCTAGTCAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACATGATAGCACTATTTATACCTTCATGAACTTTTTCTAGTCAA  738

seq1  CATTGCCTAGGGAAGCAGTTCCTAGCCTATGGATCACGACCTCTTTGGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTAGGGAAGCAGTTCCTAGCCTATGGATCACGACCTCTTTGGGG  788

seq1  TCAGATGACCCTTTCATAGGGATTGCCTAACACAATCGGAAAACACAGAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGACCCTTTCATAGGGATTGCCTAACACAATCGGAAAACACAGAT  838

seq1  AATTCCATTATGATTCATAACAGTAGCAAAACTACAGTTATGAAGTAGCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATTATGATTCATAACAGTAGCAAAACTACAGTTATGAAGTAGCA  888

seq1  ACAAAAATAATTTTATGGTTGGGGACCACCACAATATAGAAACTGTATTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATAATTTTATGGTTGGGGACCACCACAATATAGAAACTGTATTA  938

seq1  AAGGATCGCAGCATCAGGAAGGCCGAGAACCACTGCTCTGGCATGTCTCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCGCAGCATCAGGAAGGCCGAGAACCACTGCTCTGGCATGTCTCA  988

seq1  GTTTTCATAGTCTTTGACTTTGTTGACCTTCTCTGTTCTAGACTTTCCTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATAGTCTTTGACTTTGTTGACCTTCTCTGTTCTAGACTTTCCTC  1038

seq1  TTACGAACCAAGCATGATGGCACATGCTTGTAATCCCAGCACTCAGGATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGAACCAAGCATGATGGCACATGCTTGTAATCCCAGCACTCAGGATG  1088

seq1  TGGAGGCAGGAGGATCAGAGCTAGAGATCACCCTCCACTACAAAGTAAGC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCAGGAGGATCAGAGCTAGAGATCACCCTCCACTACAAAGTAAGC  1138

seq1  TCAAGGCCAACCTGGAATTC  1165
      ||||||||||||||||||||
seq2  TCAAGGCCAACCTGGAATTC  1158