BAC Information

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BAC

Clone NameB6Ng01-162H09
Chromosome14 (Build37)
Map Location 19,945,165 - 20,040,093
singlet/doubletdoublet
Overlap geneEG667341, LOC667344
Upstream geneNr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498
Downstream geneLOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162H09.bB6Ng01-162H09.g
ACCDH955294DH955295
length1,1381,069
definitionDH955294|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H09, 5' end.DH955295|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,945,165 - 19,946,312)(20,039,017 - 20,040,093)
sequence
gaattctgcagttcctaaggtgagacaaagcctcatctcatggagaggta
ggtaggatgtgatgtcagggaacaaactcagctctgaattcagtcaattt
gatgcaaagagaccaatacaaatgatcagtatacccaagagccagttctt
tcagaaactcaacaggataaacaaatgttttgccgaactaactgaaaggc
agagactcaatacccaaacttacaaaatcagaaatggaacaggagacata
acagtggacactgaggacattcaaagaatcattaggtctttctgcagaag
cctgtactgtagaaaattggaaaatctaaatggaatgggttatttctaaa
cagttataaactatcaaaatgaaatcaaaatcttctctagtaagtaacag
tcttatgatccctaaggaaatagaaacagtcatcaaaagtcttccacttc
aaaaaagaccagggccagatggttttagtgcagaattctatgtgacattc
aataaagagatcatgtccatactcctcaaattatttataaaatagaaaca
gaagaaacattgttaattcattctatgaggtcatagtcaaactgataccc
aaaccacacacagtctcaacatgggaggagaatttcagtccaatttctcc
tttttaacctttccaagcaaattttcctatcttcctaataaggaagaaca
tgtcttccttgtgtatttaaagtcatgaaattaggtactgctataggaca
gaaggtaattggatttgtaagaaatgatgtaaagtgccagtgcctggcaa
atacagaagtgcgtgctcacatcatccattggatagagcacagggtcccc
aatgaaagagctagagaatgtaaccaaggagctgaaggggtttgctgccc
cataagagggacatcaatatgaactaaccagtacccctagagcttcttgt
gactaaatcaccaatcaaagaatacacatggtggaactggtgactctagc
tgcatatgtagcagagatggctactcatcagtgggggagagagaccctag
ttctgtgagttctatgcttcagtataggggattccaggacagaatgggat
tgagtgattggggagcagtacaaggaggggattggatt
gaattctttgataacagacacagattccccactcagtttttcaagaacag
agagaaacacagtagggggaagtaccgacgctccctcttctctaggcact
gcagagagacaaggtagtgtgtgcagagggtcagcgaactttaagcgtgg
aataaaactagaaaaggccctcaggaaaaaaagacccaagagatgcccag
ttgctagctaagtatgttttagttcttccctcatagtcaaaaggtcgggt
ttcttcttttctcgtttctttacttttcttctcttttcttttcttttctt
ttttttcttttctttctttttctttcttttcttttgctttcttttctccc
cctgccttttctttgaaaacagaatggggcaagataaactgcttatctaa
aattttttatttctaattttctcccttgcttctgagttcttactaatagg
atggaaaataaaattaagtggtggacaagtaggaaagtccctaaaggaca
agcagacagattcccgatttacatcataagctataaagcaaggtgctagg
gacagtagagtggacagatgtctctaatgacatcttatttacagcacaca
gctctgaagtactttttcccaactcccctactccctgtaaaagaaagaat
atcctctaactgggttagcccattgtgataatgtatgttattatagctgt
caaagccaacccctgactgattcagaaactaatatgtaggtaaaacaccg
acatgaatcccgaatacaaactaagccaataagtacaaggagaggctcgt
aactggcagtctgtagtatccacagccatccttttacatgaggatggctt
tgagctttgagatccaccccccgtcgcatcaacttaagactttgcacatg
ataggtaagttctttaacactgagctacatctttaacctgagaccatgcc
acttttatagcgcatgtatgtctttgtgaaagaccttcattttgggaata
cacgtgtgcattcccatttggtggtttctccagtctcagtgagtcacgct
gggttatggagacttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_19945165_19946312
seq2: B6Ng01-162H09.b_50_1187

seq1  GAATTCTGCAGTTCCTAAGGTGAGACAAAGCCTCATCTCATGGAGAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGTTCCTAAGGTGAGACAAAGCCTCATCTCATGGAGAGGTA  50

seq1  GGTAGGATGTGATGTCAGGGAACAAACTCAGCTCTGAATTCAGTCAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGATGTGATGTCAGGGAACAAACTCAGCTCTGAATTCAGTCAATTT  100

seq1  GATGCAAAGAGACCAATACAAATGATCAGTATACCCAAGAGCCAGTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAGAGACCAATACAAATGATCAGTATACCCAAGAGCCAGTTCTT  150

seq1  TCAGAAACTCAACAGGATAAACAAATGTTTTGCCGAACTAACTGAAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACTCAACAGGATAAACAAATGTTTTGCCGAACTAACTGAAAGGC  200

seq1  AGAGACTCAATACCCAAACTTACAAAATCAGAAATGGAACAGGAGACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCAATACCCAAACTTACAAAATCAGAAATGGAACAGGAGACATA  250

seq1  ACAGTGGACACTGAGGACATTCAAAGAATCATTAGGTCTTTCTGCAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGACACTGAGGACATTCAAAGAATCATTAGGTCTTTCTGCAGAAG  300

seq1  CCTGTACTGTAGAAAATTGGAAAATCTAAATGGAATGGGTTATTTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACTGTAGAAAATTGGAAAATCTAAATGGAATGGGTTATTTCTAAA  350

seq1  CAGTTATAAACTATCAAAATGAAATCAAAATCTTCTCTAGTAAGTAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATAAACTATCAAAATGAAATCAAAATCTTCTCTAGTAAGTAACAG  400

seq1  TCTTATGATCCCTAAGGAAATAGAAACAGTCATCAAAAGTCTTCCACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGATCCCTAAGGAAATAGAAACAGTCATCAAAAGTCTTCCACTTC  450

seq1  AAAAAAGACCAGGGCCAGATGGTTTTAGTGCAGAATTCTATGTGACATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACCAGGGCCAGATGGTTTTAGTGCAGAATTCTATGTGACATTC  500

seq1  AATAAAGAGATCATGTCCATACTCCTCAAATTATTTATAAAATAGAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAGATCATGTCCATACTCCTCAAATTATTTATAAAATAGAAACA  550

seq1  GAAGAAACATTGTTAATTCATTCTATGAGGTCATAGTCAAACTGATACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACATTGTTAATTCATTCTATGAGGTCATAGTCAAACTGATACCC  600

seq1  AAACCACACACAGTCTCAACATGGGAGGAGAATTTCAGTCCAATTTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACACACAGTCTCAACATGGGAGGAGAATTTCAGTCCAATTTCTCC  650

seq1  TTTTTAACCTTTCCAAGCAAATTTTCCTATCTTCCTAATAAGGAAGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACCTTTCCAAGCAAATTTTCCTATCTTCCTAATAAGGAAGAACA  700

seq1  TGTCTTCCTTGTGTATTTAAAGTCATGAAATTAGGTACTGCTATAGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTTGTGTATTTAAAGTCATGAAATTAGGTACTGCTATAGGACA  750

seq1  GAAGGTAATTGGATTTGTAAGAAATGATGTAAAGTGCCAGTGCCTGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTAATTGGATTTGTAAGAAATGATGTAAAGTGCCAGTGCCTGGCAA  800

seq1  ATACAGAAGTGCGTGCTCACATCATCCATTGGATAGAGCACAGGGTCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAGTGCGTGCTCACATCATCCATTGGATAGAGCACAGGGTCCCC  850

seq1  AATGAAAGAGCTAGAGAATGTAACCAAGGAGCTGAAGGGGTTTGCTGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGAGCTAGAGAATGTAACCAAGGAGCTGAAGGGGTTTGCTGCCC  900

seq1  CATAAGAGGGACATCAATATGAACTAACCAGTACCCCTAGAGCTTCTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAGGGACATCAATATGAACTAACCAGTACCCCTAGAGCTTCTTGT  950

seq1  GACTAAATCACCAATCAAAGAATACACATGGTGGAACTGGTGACTCTAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAATCACCAATCAAAGAATACACATGGTGGAACTGGTGACTCTAGC  1000

seq1  TGCATATGTAGCAGAGGATGGCCTACTCATCAGTGGGAG-GAGAGACCCT  1049
      ||||||||||||||| ||||| ||||||||||||||| | ||||||||||
seq2  TGCATATGTAGCAGA-GATGG-CTACTCATCAGTGGGGGAGAGAGACCCT  1048

seq1  AAGTCCTGTGAAGGTTCTATGCTCCAGTATAGGGGAATTCCAGGGACAGG  1099
       ||| ||||||  |||||||||| ||||||||||| |||||| ||||| |
seq2  -AGTTCTGTGA--GTTCTATGCTTCAGTATAGGGG-ATTCCA-GGACA-G  1092

seq1  AATGGGAATGAGTGGTTTGGGGAGCAGGGACAAGGGAGGGATTGTGATT  1148
      ||||||| ||||| | |||||||||| | ||||||  ||||||| ||||
seq2  AATGGGATTGAGT-GATTGGGGAGCA-GTACAAGGAGGGGATTG-GATT  1138

seq1: chr14_20039017_20040093
seq2: B6Ng01-162H09.g_67_1135 (reverse)

seq1  TTTGAAGTCTCCATAACCCAGCGTGACTCCACTGAGACTGGGAGAAAACA  50
      |||||||||||||||||||||||||||| |||||||||| ||||||| ||
seq2  TTTGAAGTCTCCATAACCCAGCGTGACT-CACTGAGACT-GGAGAAACCA  48

seq1  CCAAATGGGAATGCACACGTGTATTTCCCAAAATTGAAGGTCTTTTCACA  100
      ||||||||||||||||||||||| ||||||||| |||||||| |||||||
seq2  CCAAATGGGAATGCACACGTGTA-TTCCCAAAA-TGAAGGTC-TTTCACA  95

seq1  AAGGACATACATGCGCTATTAAAAGTGGCATGGTCTCAGGTTAAAGATGT  150
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AA-GACATACATGCGCTA-TAAAAGTGGCATGGTCTCAGGTTAAAGATGT  143

seq1  AGCTCAGTGTTAAAGAACTTACCTATCATGTGCAAAGTCTTAAGTTTGAT  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGCTCAGTGTTAAAGAACTTACCTATCATGTGCAAAGTCTTAAG-TTGAT  192

seq1  GCGACGGGGGGTGGATCTCAAAGCTCAAAGCCATCCTCATGTAAAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACGGGGGGTGGATCTCAAAGCTCAAAGCCATCCTCATGTAAAAGGAT  242

seq1  GGCTGTGGATACTACAGACTGCCAGTTACGAGCCTCTCCTTGTACTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGATACTACAGACTGCCAGTTACGAGCCTCTCCTTGTACTTATT  292

seq1  GGCTTAGTTTGTATTCGGGATTCATGTCGGTGTTTTACCTACATATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGTTTGTATTCGGGATTCATGTCGGTGTTTTACCTACATATTAGT  342

seq1  TTCTGAATCAGTCAGGGGTTGGCTTTGACAGCTATAATAACATACATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATCAGTCAGGGGTTGGCTTTGACAGCTATAATAACATACATTAT  392

seq1  CACAATGGGCTAACCCAGTTAGAGGATATTCTTTCTTTTACAGGGAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGGGCTAACCCAGTTAGAGGATATTCTTTCTTTTACAGGGAGTAG  442

seq1  GGGAGTTGGGAAAAAGTACTTCAGAGCTGTGTGCTGTAAATAAGATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGGGAAAAAGTACTTCAGAGCTGTGTGCTGTAAATAAGATGTCA  492

seq1  TTAGAGACATCTGTCCACTCTACTGTCCCTAGCACCTTGCTTTATAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGACATCTGTCCACTCTACTGTCCCTAGCACCTTGCTTTATAGCTT  542

seq1  ATGATGTAAATCGGGAATCTGTCTGCTTGTCCTTTAGGGACTTTCCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTAAATCGGGAATCTGTCTGCTTGTCCTTTAGGGACTTTCCTACT  592

seq1  TGTCCACCACTTAATTTTATTTTCCATCCTATTAGTAAGAACTCAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACCACTTAATTTTATTTTCCATCCTATTAGTAAGAACTCAGAAGC  642

seq1  AAGGGAGAAAATTAGAAATAAAAAATTTTAGATAAGCAGTTTATCTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAAAATTAGAAATAAAAAATTTTAGATAAGCAGTTTATCTTGCC  692

seq1  CCATTCTGTTTTCAAAGAAAAGGCAGGGGGAGAAAAGAAAGCAAAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGTTTTCAAAGAAAAGGCAGGGGGAGAAAAGAAAGCAAAAGAAA  742

seq1  AGAAAGAAAAAGAAAGAAAAGAAAAAAAAGAAAAGAAAAGAAAAGAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAAGAAAGAAAAGAAAAAAAAGAAAAGAAAAGAAAAGAGAAG  792

seq1  AAAAGTAAAGAAACGAGAAAAGAAGAAACCCGACCTTTTGACTATGAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAAGAAACGAGAAAAGAAGAAACCCGACCTTTTGACTATGAGGG  842

seq1  AAGAACTAAAACATACTTAGCTAGCAACTGGGCATCTCTTGGGTCTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTAAAACATACTTAGCTAGCAACTGGGCATCTCTTGGGTCTTTTT  892

seq1  TTCCTGAGGGCCTTTTCTAGTTTTATTCCACGCTTAAAGTTCGCTGACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAGGGCCTTTTCTAGTTTTATTCCACGCTTAAAGTTCGCTGACCC  942

seq1  TCTGCACACACTACCTTGTCTCTCTGCAGTGCCTAGAGAAGAGGGAGCGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACACACTACCTTGTCTCTCTGCAGTGCCTAGAGAAGAGGGAGCGT  992

seq1  CGGTACTTCCCCCTACTGTGTTTCTCTCTGTTCTTGAAAAACTGAGTGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTACTTCCCCCTACTGTGTTTCTCTCTGTTCTTGAAAAACTGAGTGGG  1042

seq1  GAATCTGTGTCTGTTATCAAAGAATTC  1077
      |||||||||||||||||||||||||||
seq2  GAATCTGTGTCTGTTATCAAAGAATTC  1069