BAC Information

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BAC

Clone NameB6Ng01-162K20
Chromosome14 (Build37)
Map Location 4,758,780 - 4,942,758
singlet/doubletdoublet
Overlap geneLOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317
Upstream geneLOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549
Downstream geneLOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162K20.bB6Ng01-162K20.g
ACCDH955457DH955458
length1,2001,086
definitionDH955457|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K20, 5' end.DH955458|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,941,547 - 4,942,758)(4,758,780 - 4,759,859)
sequence
gaattcccagaggacacaactagtatttacaggagaaaggctttatcaca
cctcctcccccaggagattcctgtgtgacaccaaggaaacaccaggaaca
aacttccctggtgatcactttggacctctatggactcaacactaacacta
cctgcaaactgtgcaacacacaaatcctcagaccccatcaaaggtcccag
agcctcagtcctgaacaaaacacacacagctaagttcacacacacagaca
caattagaatgccaaataaatccagggaggtaccatctctcagaatataa
tgaacaatatcagagtaaagccttgaagcctgcaggcattgcattcacac
actgagaggcaacaagtgtgagcaggaccttccagctgttgacatcaaca
atcagattgcaagcatcccagggtcaagtacaaaaaaagatgataataaa
cacacagcaccttgtttatccaacaattaaacacctgttagggctactta
attgaatgatgggagatcacactccatttatagaaggaaattgggttaac
agatggcacaatacaggaaacaaggtactgggcataattcctacctgtaa
ttcaaatcctcatacatgtaaacgatcaggattccacacatttcctccat
gtcattgatgatcttcctcttatgcaatttcagttctctaactttattta
tatttgatatctgattagtgatgttggaattttgggttgaagtatttcta
gcagaccctgcagatagataaacacaaatgagtttgcatacttgatggcc
caggggaggggagaccattcagagtcccaagaagaagatggatggagaga
aaaggtaaagacggggtgaatccttaaaagagcagaaaagctatcttcca
gctggtttgctaagctatgttcctcttcctaaccacattgtcagacatat
gcctcactccctattacaggaccctttgccctgaaatctataattgcctc
agaacataaagatatggggaacattgtcaggtcatatcagatgtgttaca
aggaaatccttgaagtcatagtgctaggcactatcagcactaattaatca
aggtctggaaacctcacccacatgacttgacaggggagcatcttccgttc
tttccatcaggactcaagtacccaagtatctgggaagtgattgcttcaac

gaattcctggcaaagagaaaggctgctataggtaactgtctgtcttgctt
gggagcacatgagctgtagaattgccatctctgcttttgatcctgcacag
gagactctcgagctctggttcttgctttctgccacttcacacaggagcct
ttagatttttctgttgtaaacctgtgggttgaaacactttttggggtaaa
aaaaaaaagtcaaaggaccctttcacagaggttgtgtatcagacaatcct
ttatctcagacacttctattatggcttataacagtacaaaaattatagta
cccaagtagcaatgaaaataatcttaagtttgggaggtcactgcattaaa
gcatccacagcatttggtaaattgagaaaccctggtcttgacagaagaac
tatttgtatcatgtgaggtcttcttgacccccggggctgagtcaggatct
gtagagagctagttaccagcagacccatatatagcaagtattccccttgt
ttctcctttccaattcatagtgcctttgcccattccttcgtgatgtttct
ccattaggatggacaggtagggacaactgtagtccacttcttctttttag
gaaacatggatccctcttagtgttgggacttttggaagtagcatgagtgt
ttctggaatttgctgttctctaatttttgctttctgagtgcagctcacct
agatgtcctgagttcttatctaggtcttcctgagaaccagggtctggtgg
ggttgatggtgtttcttataagttaataggaaaaggatagcaggggcttt
gtatgcattgggtgtttgcagaaacctgcagagccaccttctgatggaac
tgaatcagctgaagaagacggtagacatgctgaggaggcacaggaataga
aagtgctggaagatgaggcactggtgctgcagtacttggtgggacttaaa
gggggctccataaggaccataagaagaggccatgtgactttccagagtca
aggaacatcaggtataagacaggcagcctttgttaagcctaatggttagt
ctcatctggccctttgtaactctagaacgagctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4941547_4942758
seq2: B6Ng01-162K20.b_47_1246 (reverse)

seq1  GTTGAAGCACTTCACCTTCCAGATTACTGTGGGTAACTTGAGTCTCTGAT  50
      |||||||||  |||| | ||||| |||| ||||| ||||||||| |||||
seq2  GTTGAAGCA-ATCACTTCCCAGA-TACT-TGGGT-ACTTGAGTC-CTGAT  45

seq1  GAAAAGAACAGAGAAGGATGCTCCCCTGGTCATGTCATGT-GGTGAGGTC  99
      | |||||||   | | ||||||||||| |||| ||||||| |||||||| 
seq2  GGAAAGAAC---GGAAGATGCTCCCCT-GTCAAGTCATGTGGGTGAGGTT  91

seq1  T-CAGACACTTTGGATTAATTAGTGCTTGATAGTGCTAAGCACTATGAAC  148
      | ||||| |||  ||||||||||||| |||||||||  ||||||||| ||
seq2  TCCAGAC-CTT--GATTAATTAGTGC-TGATAGTGCCTAGCACTATG-AC  136

seq1  TTC-AGGATTTCCCTGTAACACATCTGATATGACCTGACAATGTTCCCCA  197
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGATTTCCTTGTAACACATCTGATATGACCTGACAATGTTCCCCA  186

seq1  TATCTTTATG-TCTGAGGCAAATTATAGATTTCAGGGCAAAGGGTCCTGT  246
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  TATCTTTATGTTCTGAGGC-AATTATAGATTTCAGGGCAAAGGGTCCTGT  235

seq1  AATAGGGAGTATGGCATATGTCTGACAATGGTGGTTAGGAAGAGGAACAT  296
      ||||||||||  ||||||||||||||||| ||||||||||||||||||||
seq2  AATAGGGAGTGAGGCATATGTCTGACAAT-GTGGTTAGGAAGAGGAACAT  284

seq1  AGCTTAGCAAACCAGCTGAAAGATAGCTTTTCTGCTCTTTTAAGGATTCA  346
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCTTAGCAAACCAGCTGGAAGATAGCTTTTCTGCTCTTTTAAGGATTCA  334

seq1  CCCCGTCTTTACCTTTTCTCTCCATCCATCTTCTTCTTGGGACTCTGAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTCTTTACCTTTTCTCTCCATCCATCTTCTTCTTGGGACTCTGAAT  384

seq1  GGTCTCCCCTCCCCTGGGCCATCAAGTATGCAAACTCATTTGTGTTTATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCCTCCCCTGGGCCATCAAGTATGCAAACTCATTTGTGTTTATC  434

seq1  TATCTGCAGGGTCTGCTAGAAATACTTCAACCCAAAATTCCAACATCACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCAGGGTCTGCTAGAAATACTTCAACCCAAAATTCCAACATCACT  484

seq1  AATCAGATATCAAATATAAATAAAGTTAGAGAACTGAAATTGCATAAGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGATATCAAATATAAATAAAGTTAGAGAACTGAAATTGCATAAGAG  534

seq1  GAAGATCATCAATGACATGGAGGAAATGTGTGGAATCCTGATCGTTTACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCATCAATGACATGGAGGAAATGTGTGGAATCCTGATCGTTTACA  584

seq1  TGTATGAGGATTTGAATTACAGGTAGGAATTATGCCCAGTACCTTGTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGGATTTGAATTACAGGTAGGAATTATGCCCAGTACCTTGTTTC  634

seq1  CTGTATTGTGCCATCTGTTAACCCAATTTCCTTCTATGAATGGAGTGTGA  696
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGTATTGTGCCATCTGTTAACCCAATTTCCTTCTATAAATGGAGTGTGA  684

seq1  TCTCCCATCATTCAATTAAGTAGCCCTAACAGGTGTTTAATTGTTGGATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATCATTCAATTAAGTAGCCCTAACAGGTGTTTAATTGTTGGATA  734

seq1  AACAAGGTGCTGTGTGTTTATTATCATCTTTTTTTGTACTTGACCCTGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTGCTGTGTGTTTATTATCATCTTTTTTTGTACTTGACCCTGGG  784

seq1  ATGCTTGCAATCTGATTGTTGCTGTCAACAGCTGGAAGGTCCTGCTCACA  846
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGCTTGCAATCTGATTGTTGATGTCAACAGCTGGAAGGTCCTGCTCACA  834

seq1  CTTGTTGCCTCTCAGTGTGTGAATGCAATGCCTGCAGGCTTCAAGGCTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGCCTCTCAGTGTGTGAATGCAATGCCTGCAGGCTTCAAGGCTTT  884

seq1  ACTCTGATATTGTTCATTATATTCTGAGAGATGGTACCTCCCTGGATTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATATTGTTCATTATATTCTGAGAGATGGTACCTCCCTGGATTTA  934

seq1  TTTGGCATTCTAATTGTGTCTGTGTGTGGGAACTTAGCTGTGTGTGTTTT  996
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTGGCATTCTAATTGTGTCTGTGTGTGTGAACTTAGCTGTGTGTGTTTT  984

seq1  GTTCAGGACTGAGGCTCTGGGACCTTTGATGGGGTCTGAGGATTTGTGTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGACTGAGGCTCTGGGACCTTTGATGGGGTCTGAGGATTTGTGTG  1034

seq1  TTGCACAGTTTGCAGGTAGTGTTAGTGTTGAGTCCATAGAGGTCCAAAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGTTTGCAGGTAGTGTTAGTGTTGAGTCCATAGAGGTCCAAAGT  1084

seq1  GATCACCAGGGAAGTTTGTTCCTGGTGTTTCCTTGGTGTCACACAGGAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCAGGGAAGTTTGTTCCTGGTGTTTCCTTGGTGTCACACAGGAAT  1134

seq1  CTCCTGGGGGAGGAGGTGTGATAAAGCCTTTCTCCTGTAAATACTAGTTG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGGGGAGGAGGTGTGATAAAGCCTTTCTCCTGTAAATACTAGTTG  1184

seq1  TGTCCTCTGGGAATTC  1212
      ||||||||||||||||
seq2  TGTCCTCTGGGAATTC  1200

seq1: chr14_4758780_4759859
seq2: B6Ng01-162K20.g_67_1152

seq1  GAATTCCTGGCAAAGAGAAAGGCTGCTATAGGTAACTGTCTGTCTTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCAAAGAGAAAGGCTGCTATAGGTAACTGTCTGTCTTGCTT  50

seq1  GGGAGCACATGAGCTGTAGAATTGCCATCTCTGCTTTTGATCCTGCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCACATGAGCTGTAGAATTGCCATCTCTGCTTTTGATCCTGCACAG  100

seq1  GAGACTCTCGAGCTCTGGTTCTTGCTTTCTGCCACTTCACACAGGAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTCGAGCTCTGGTTCTTGCTTTCTGCCACTTCACACAGGAGCCT  150

seq1  TTAGATTTTTCTGTTGTAAACCTGTGGGTTGAAACACTTTTTGGGGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTTCTGTTGTAAACCTGTGGGTTGAAACACTTTTTGGGGTAAA  200

seq1  AAAAAAAAAGGTCAAAGGACCCTTTCACAGAGGTTGTGTATCAGACAATC  250
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAA--GTCAAAGGACCCTTTCACAGAGGTTGTGTATCAGACAATC  248

seq1  CTTTATCTCAGACACTTCTATTATGGCTTATAACAGTACAAAAATTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTCAGACACTTCTATTATGGCTTATAACAGTACAAAAATTATAG  298

seq1  TACCCAAGTAGCAATGAAAATAATCTTAAGTTTGGGAGGTCACTGCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGTAGCAATGAAAATAATCTTAAGTTTGGGAGGTCACTGCATTA  348

seq1  AAGCATCCACAGCATTTGGTAAATTGAGAAACCCTGGTCTTGACAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCCACAGCATTTGGTAAATTGAGAAACCCTGGTCTTGACAGAAGA  398

seq1  ACTATTTGTATCATGTGAGGTCTTCTTGACCCCCGGGGCTGAGTCAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGTATCATGTGAGGTCTTCTTGACCCCCGGGGCTGAGTCAGGAT  448

seq1  CTGTAGAGAGCTAGTTATCAGCAGACCCATATATAGCAAGTATTCCCCTT  500
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGTAGAGAGCTAGTTACCAGCAGACCCATATATAGCAAGTATTCCCCTT  498

seq1  GTTTCTCCTTTCCAATTCATAGTGCCTTTGCCCATTCCTTCGTGATGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCCTTTCCAATTCATAGTGCCTTTGCCCATTCCTTCGTGATGTTT  548

seq1  CTCCATTAGGATGGACAGATAGGGACAACTGTAGTCCACTTCTTCTTTTT  600
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCCATTAGGATGGACAGGTAGGGACAACTGTAGTCCACTTCTTCTTTTT  598

seq1  AGGAAACATGGATCCCTCTTAGTGTTGGGACTTTTGGAAGTAGCATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACATGGATCCCTCTTAGTGTTGGGACTTTTGGAAGTAGCATGAGT  648

seq1  GTTTCTGGAATTTGCTGTTCTCTAATTTTTGCTTTCTGAGTGCAGCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGAATTTGCTGTTCTCTAATTTTTGCTTTCTGAGTGCAGCTCAC  698

seq1  CTAGATGTCCTGAGTTCTTATCTAGGTCTTCCTGAGAACCAGGGTCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGTCCTGAGTTCTTATCTAGGTCTTCCTGAGAACCAGGGTCTGGT  748

seq1  GGGGTTGATGGTGTTTCTTATAAGTTAATAGGAAAAGGATAGCAGGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGATGGTGTTTCTTATAAGTTAATAGGAAAAGGATAGCAGGGGCT  798

seq1  TTGTATGCATTGGGTGTTTGCAGAAACCTGCAGAGCCACCTTCTGATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGCATTGGGTGTTTGCAGAAACCTGCAGAGCCACCTTCTGATGGA  848

seq1  ACTGAATCAGCTGAAGAAGAAGGTAGACATGCTGAGGAGGCACAGGAATA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  ACTGAATCAGCTGAAGAAGACGGTAGACATGCTGAGGAGGCACAGGAAT-  897

seq1  AGAAAGTGCTGGAAGATGAGGCACTGGTGCTGCAGTACTT-GTGGGACTT  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAAAGTGCTGGAAGATGAGGCACTGGTGCTGCAGTACTTGGTGGGACTT  947

seq1  AAA-GGGGCTCCATAAGGACCAATAGGAAGAGGCCA-GTGAC-TTCCAGA  996
      ||| ||||||||||||||||| ||| |||||||||| ||||| |||||||
seq2  AAAGGGGGCTCCATAAGGACC-ATAAGAAGAGGCCATGTGACTTTCCAGA  996

seq1  GTC-AGGAACAACAGGTA-GAGACAGGCAG-CTTTG-TCAGGCTAATGGT  1042
      ||| ||||||| ||||||  |||||||||| ||||| | || ||||||||
seq2  GTCAAGGAACATCAGGTATAAGACAGGCAGCCTTTGTTAAGCCTAATGGT  1046

seq1  TAGCTCCATCTG--CCCTTGTAACTTCTAG-ACGAGCTCAT  1080
      |||   ||||||  || ||||||| ||||| ||||||||||
seq2  TAGTCTCATCTGGCCCTTTGTAAC-TCTAGAACGAGCTCAT  1086