BAC Information

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BAC

Clone NameB6Ng01-163E19
Chromosome14 (Build37)
Map Location 69,291,264 - 69,394,824
singlet/doubletdoublet
Overlap geneLOC100043082
Upstream geneCdca2, Kctd9, Gnrh1, Dock5, Nefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033
Downstream geneStc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163E19.bB6Ng01-163E19.g
ACCDH955923DH955924
length1,1321,023
definitionDH955923|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E19, 5' end.DH955924|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,291,264 - 69,292,408)(69,393,785 - 69,394,824)
sequence
gaattctctaagaagaatgcctcaactctgccaaaatgagtttggttacc
cccatatcattgcaccaggggacactttttgcctggacaatcagtgttaa
aacatgcaaagtccagagccagtaagaacactgatgaatttttgcccaca
taacaccctctggcactatgaaaaaattaccagaagagaggaagatttca
ggtcagttctactttgatttctttatgacctataacaaaagcttgtgggt
ttttctgcaacagagtctgaaccatcacattatggtaggcaaccaagagc
catggagagagcctagatagtttgggaggtttctgagggtctccaaacag
aatagatgagaagtacaggtttgggtcagaagactcctggctttcttccc
actaagatgaccacctctattgtgttataattgaactcatcctgcagata
actggttaggaaaggacacagaggttcacattgtttcattcaactactct
tcagtaagtttatgtcaggcttgaaaaatattattctgtcttccaagacc
caggacacattgtccttaccataaaggcccagtctctggttcttcagttt
taagggattctatagtagtcatgacctccttagtaacagtttggcaaaag
gtttttacatcggtcatctttacatggatgcatctcaatgcagctccact
gtagactagctatagtgtgtaacttctctctgcctcagaggtgacatgca
gcttgtctcattaatttagtgagagatttcaataggttaattcaacctgt
ttgaacagtgtacatagttagtgaattattaacaaacaaaacaaagtttg
tatgtaatatttgtgaagtaatatgtaaattgtgtttttccggtgagttt
agtgaggttttttttttttttttttgctgctgctggcacaccacaggcta
tcatgagtgttcagtactctgtgtataggactctcagtagcatcaaacct
tgcctccccaggaggttatgcaccaatggtaacttacctgatgcattgct
ctttgcaattgtcgtcaaggtattccttcacttcacttaatggcacaaat
cgctatggagtgcagataaaggtatctatcat
gaattcccatgactgtgtggctgagagctacatagggctatattcaggtg
tgaggagtaaaaggctgagttggaatttgttggttgtttattttacatgg
gaggaaataatctgtgaggtccttctctactgggtgtcatgggtgtgtac
tcaaatatacacatgtgtgccggaagcctttggtgcattgttggttgtct
ttcaatgctctctatccaataatctccagggagacagctctgtataatga
gaagggtggggacatttgtgagagggctagggggaggagctagggtattt
gttttgccttaaagtgactactatcctcatggtggcacttagccatctgg
attgttttggttactttccattcatttaaagcaagtgtgtgtgggaagaa
gctggtgggaactggggatggaagagatataaacttattttgagcattgc
atattagtcatatttcatgtacgaagtcaccaactgaaacaaacacccgg
cggccatagacgtcactggtaagtgataggttttgtttgaagagggactc
tcatggctgtgattaagccctgttaaacattatttgccactagggccgga
aacatttccattgtgccttctcactcccaaaatgccaagactcaggaaat
acatgaactttaagaactattctggctggttccataaaggccttgggaac
cagggaaggaaaatagagtcacatgacccctggggccttgaactgtttga
aatttacttataagtcacccaaacaatttccttaattgctgtgtcttttg
tttccccgctttgtctgtctctctgtctgtctctcttgtcctgcccgtgt
gctctctcgggtctctctcgggtcactctgactctgtctctctctctctc
tctctctcttaccgctctatctgtgtttctacatttaaagtgatttagtt
ttcatttagctgtagcattccaagtttttccatggaatttactggtcact
gtgaacatcctgaacaacattac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_69291264_69292408
seq2: B6Ng01-163E19.b_45_1176

seq1  GAATTCTCTAAGAAGAATGCCTCAACTCTGCCAAAATGAGTTTGGTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGAAGAATGCCTCAACTCTGCCAAAATGAGTTTGGTTACC  50

seq1  CCCATATCATTGCACCAGGGGACACTTTTTGCCTGGACAATCAGTGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCATTGCACCAGGGGACACTTTTTGCCTGGACAATCAGTGTTAA  100

seq1  AACATGCAAAGTCCAGAGCCAGTAAGAACACTGATGAATTTTTGCCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCAAAGTCCAGAGCCAGTAAGAACACTGATGAATTTTTGCCCACA  150

seq1  TAACACCCTCTGGCACTATGAAAAAATTACCAGAAGAGAGGAAGATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCCTCTGGCACTATGAAAAAATTACCAGAAGAGAGGAAGATTTCA  200

seq1  GGTCAGTTCTACTTTGATTTCTTTATGACCTATAACAAAAGCTTGTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTTCTACTTTGATTTCTTTATGACCTATAACAAAAGCTTGTGGGT  250

seq1  TTTTCTGCAACAGAGTCTGAACCATCACATTATGGTAGGCAACCAAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCAACAGAGTCTGAACCATCACATTATGGTAGGCAACCAAGAGC  300

seq1  CATGGAGAGAGCCTAGATAGTTTGGGAGGTTTCTGAGGGTCTCCAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGAGAGCCTAGATAGTTTGGGAGGTTTCTGAGGGTCTCCAAACAG  350

seq1  AATAGATGAGAAGTACAGGTTTGGGTCAGAAGACTCCTGGCTTTCTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGAGAAGTACAGGTTTGGGTCAGAAGACTCCTGGCTTTCTTCCC  400

seq1  ACTAAGATGACCACCTCTATTGTGTTATAATTGAACTCATCCTGCAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGATGACCACCTCTATTGTGTTATAATTGAACTCATCCTGCAGATA  450

seq1  ACTGGTTAGGAAAGGACACAGAGGTTCACATTGTTTCATTCAACTACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTAGGAAAGGACACAGAGGTTCACATTGTTTCATTCAACTACTCT  500

seq1  TCAGTAAGTTTATGTCAGGCTTGAAAAATATTATTCTGTCTTCCAAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGTTTATGTCAGGCTTGAAAAATATTATTCTGTCTTCCAAGACC  550

seq1  CAGGACACATTGTCCTTACCATAAAGGCCCAGTCTCTGGTTCTTCAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACATTGTCCTTACCATAAAGGCCCAGTCTCTGGTTCTTCAGTTT  600

seq1  TAAGGGATTCTATAGTAGTCATGACCTCCTTAGTAACAGTTTGGCAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGATTCTATAGTAGTCATGACCTCCTTAGTAACAGTTTGGCAAAAG  650

seq1  GTTTTTACATCGGTCATCTTTACATGGATGCATCTCAATGCAGCTCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTACATCGGTCATCTTTACATGGATGCATCTCAATGCAGCTCCACT  700

seq1  GTAGACTAGCTATAGTGTGTAACTTCTCTCTGCCTCAGAGGTGACATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTAGCTATAGTGTGTAACTTCTCTCTGCCTCAGAGGTGACATGCA  750

seq1  GCTTGTCTCATTAATTTAGTGAGAGATTTCAATAGGTTAATTCAACCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTCATTAATTTAGTGAGAGATTTCAATAGGTTAATTCAACCTGT  800

seq1  TTGAACAGTGTACATAGTTAGTGAATTATTAACAAACAAAACAAAAGTTT  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGAACAGTGTACATAGTTAGTGAATTATTAACAAACAAAAC-AAAGTTT  849

seq1  GTATGTAATATTTGTGAAGTAATATGTAAATTGTGTTTTTCCGGTGAGTT  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTATGTAATATTTGTGAAGTAATATGTAAATTGTGTTTTTCCGGTGAG-T  898

seq1  TTAGTGAGGTTTTTTTTTTTTTTTTTTTTTTTTTGCTGCTGCTGGCACAC  950
      |||||||||       ||||||||||||||||||||||||||||||||||
seq2  TTAGTGAGG-------TTTTTTTTTTTTTTTTTTGCTGCTGCTGGCACAC  941

seq1  CACAGGCTATCATGAGTGTTCAGTACCTCTGTGTAATAGGACTCTTCAGT  1000
      ||||||||||||||||||||||||| |||||||| ||||||||| |||||
seq2  CACAGGCTATCATGAGTGTTCAGTA-CTCTGTGT-ATAGGACTC-TCAGT  988

seq1  AGCATCAAACC-TGCCTCCCCCAGAGGGTTATGCACCAATGGTACCT--A  1047
      ||||||||||| ||||| ||||||  |||||||||||||||||| ||   
seq2  AGCATCAAACCTTGCCT-CCCCAGGAGGTTATGCACCAATGGTAACTTAC  1037

seq1  CTGATGCATTGCTCTTTGCAATTGTCGTCAAGTTATTTCTTCACTTCACT  1097
      |||||||||||||||||||||||||||||||| |||| ||||||||||||
seq2  CTGATGCATTGCTCTTTGCAATTGTCGTCAAGGTATTCCTTCACTTCACT  1087

seq1  TTAAATGCCACAATTCGTCATGATGTCAGGATAAAGTATATCTATCAT  1145
      |  |||| ||||| |||  |||  ||   |||||||  ||||||||||
seq2  T--AATGGCACAAATCGCTATGGAGTGCAGATAAAG-GTATCTATCAT  1132

seq1: chr14_69393785_69394824
seq2: B6Ng01-163E19.g_67_1089 (reverse)

seq1  GTAATGATTGTTCTAGGATGTTC-CAGTGTACCAGTAAATTACCATGGAC  49
      |||||| |||||| ||||||||| ||||| ||||||||||| ||||||| 
seq2  GTAATG-TTGTTC-AGGATGTTCACAGTG-ACCAGTAAATT-CCATGGA-  45

seq1  AAAATTTGAAATGCTACAGCTAAATGAAAAACTAAATCACTTTTAAATGT  99
      |||| ||| ||||||||||||||||| ||||||||||||| |||||||||
seq2  AAAACTTGGAATGCTACAGCTAAATG-AAAACTAAATCAC-TTTAAATGT  93

seq1  AGAAACACAGATAGAGCGGTAAAGAGAGAGAGAGAGAGAGAGAGACAGAG  149
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAAACACAGATAGAGCGGT-AAGAGAGAGAGAGAGAGAGAGAGACAGAG  142

seq1  ACAGAGAGACACAGAGAGAGACACAGAGAGAGACACACAGAGACAGAGAC  199
       ||||| ||| | ||||||||| | |||||||   ||||  | ||| |||
seq2  TCAGAGTGAC-CCGAGAGAGAC-CCGAGAGAG---CACACGGGCAG-GAC  186

seq1  AAAGAGAGACAGACAGAGAGACAGACAAAGCGGGGAAACAAAAGGACACA  249
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  -AAGAGAGACAGACAGAGAGACAGACAAAGCGGGGAAACAAAA-GACACA  234

seq1  GCAAATTAAGGAAATTGTTTGGGTGACTTATAAGTAAATTTTCAAACAGT  299
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GC-AATTAAGGAAATTGTTTGGGTGACTTATAAGTAAA-TTTCAAACAGT  282

seq1  TCAAGGCCCCAGGGGTCATGTGACTCTATTTTCCTTCCCTGGTTCCCAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCCCAGGGGTCATGTGACTCTATTTTCCTTCCCTGGTTCCCAAG  332

seq1  GCCTTTATGGAACCAGCCAGAATAGTTCTTAAAGTTCATGTATTTCCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATGGAACCAGCCAGAATAGTTCTTAAAGTTCATGTATTTCCTGA  382

seq1  GTCTTGGCATTTTGGGAGTGAGAAGGCACAATGGAAATGTTTCCGGCCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGCATTTTGGGAGTGAGAAGGCACAATGGAAATGTTTCCGGCCCT  432

seq1  AGTGGCAAATAATGTTTAACAGGGCTTAATCACAGCCATGAGAGTCCCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAAATAATGTTTAACAGGGCTTAATCACAGCCATGAGAGTCCCTC  482

seq1  TTCAAACAAAACCTATCACTTACCAGTGACGTCTATGGCCGCCGGGTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAAAACCTATCACTTACCAGTGACGTCTATGGCCGCCGGGTGTT  532

seq1  TGTTTCAGTTGGTGACTTCGTACATGAAATATGACTAATATGCAATGCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGTTGGTGACTTCGTACATGAAATATGACTAATATGCAATGCTC  582

seq1  AAAATAAGTTTATATCTCTTCCATCCCCAGTTCCCACCAGCTTCTTCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTTTATATCTCTTCCATCCCCAGTTCCCACCAGCTTCTTCCCA  632

seq1  CACACACTTGCTTTAAATGAATGGAAAGTAACCAAAACAATCCAGATGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTTGCTTTAAATGAATGGAAAGTAACCAAAACAATCCAGATGGC  682

seq1  TAAGTGCCACCATGAGGATAGTAGTCACTTTAAGGCAAAACAAATACCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCCACCATGAGGATAGTAGTCACTTTAAGGCAAAACAAATACCCT  732

seq1  AGCTCCTCCCCCTAGCCCTCTCACAAATGTCCCCACCCTTCTCATTATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCCCCCTAGCCCTCTCACAAATGTCCCCACCCTTCTCATTATAC  782

seq1  AGAGCTGTCTCCCTGGAGATTATTGGATAGAGAGCATTGAAAGACAACCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTCTCCCTGGAGATTATTGGATAGAGAGCATTGAAAGACAACCA  832

seq1  ACAATGCACCAAAGGCTTCCGGCACACATGTGTATATTTGAGTACACACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCACCAAAGGCTTCCGGCACACATGTGTATATTTGAGTACACACC  882

seq1  CATGACACCCAGTAGAGAAGGACCTCACAGATTATTTCCTCCCATGTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACCCAGTAGAGAAGGACCTCACAGATTATTTCCTCCCATGTAAA  932

seq1  ATAAACAACCAACAAATTCCAACTCAGCCTTTTACTCCTCACACCTGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAACCAACAAATTCCAACTCAGCCTTTTACTCCTCACACCTGAAT  982

seq1  ATAGCCCTATGTAGCTCTCAGCCACACAGTCATGGGAATTC  1040
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTATGTAGCTCTCAGCCACACAGTCATGGGAATTC  1023