BAC Information

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BAC

Clone NameB6Ng01-163F23
Chromosome14 (Build37)
Map Location 93,655,882 - 93,791,813
singlet/doubletdoublet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163F23.bB6Ng01-163F23.g
ACCDH955977DH955978
length6621,106
definitionDH955977|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F23, 5' end.DH955978|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,791,164 - 93,791,813)(93,655,882 - 93,656,984)
sequence
gaattctttaccattaaactctgccaattatactcactgagaaaaaaaaa
atgaaaaaagtgaaaaggacagaaagtaacttattcatgttgtcactgaa
aagagaaacagagtcctccccctgtagcaaagaccatctttgtagtccta
atatgaggttgaagtttaaacacagggcaatagttttgcataactaagta
gtcctagccaaggtgtaggactatcgccccagttataatttctgccaaag
aggagtccaacaaattgccagcacagttgcctccactgcctcacaacagt
cttcaacctttactttcttgcataagacttctacataaagttcaagttct
cagaacccactatttcaataatctgatagacaagtatgggtgatatcagt
atttcttaagtacaggtaaaacatatagctttaaatatttgattgcccaa
caacagagctttatagcatattattaaacaatctagttacactattagga
tgttaattatgtgtcccagtaagagttatgatctctctgtggattcagtg
tttatgtatatataaacactgaatatatatatttatatgtgtgtgtgtgt
gtatatgtatatatgtatatatatatatatatatatatatatatatatat
acacacacacac
gaattcaatttcatctgactaatgcagaatttgaaatatactcttctgaa
aaagtttttcttcccttttagagagaacagcaactagttcaccgcattgc
atttctgctagcaaaatcctagtagaaagaaatctgggagaaaaaaattg
ttcctttatccagaaaataagtatttccttttgcctttttgccttgtgga
tttaaaaccagccactttagagttttctgtgggaacacaatcactctttt
cttaaaaaaaaaaaaaaaaaaaaaagcatcagtagtcaaaataacgtgaa
tatgttcactgcctagaactattgtaaacttactgtaccaggatacttta
aaactacagaaattgatgtttacggcagcagaagagtacagggtggtggt
agcagcatggacagatttctgcagacactctagataatccccccttgcct
cttaactttctggacattgtagtggtcctcagatgctgggagtgtgcctt
ttacctttattcccgcctttggatgactgcatcccttcgtgtttggacac
atgcttttctttctctcactgtctcaagcacacacacattacagtgtata
tttggatcttaaagaataggatttataaggaacatgggttgagaaaattc
ataagaaagctgtaagaagaacagatcaaaacctttcaagggagtgatag
gaacttgttctgtgggttcaaatagaagaagcttcaaacataggattggc
tatttgttgacatgctgggttttaaatagaaatgcctatgactaaagaac
taaatctttttcacgggtaatcctgtactcacttgccaccaaaactaatt
gatctacaattgtatcactaggaaaatcttcttaattagcgtaagtcagt
tctacagaatcgatgataccttgcaatcttagtgatgacgatgggactga
gcagtattacctacaccacacttggaaatcattcagttatctttcagtga
atgtagatttggcacaacaccaactcacacccacattctataatggcaat
tcattttcattagaggccaattccaaattcctgactatttggaataacga
gactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93791164_93791813
seq2: B6Ng01-163F23.b_49_698 (reverse)

seq1  ATATATATATATATATATATATATATATATATATACATATATACATATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATACATATATACATATAC  50

seq1  ACACACACACACATATAAATATATATATTCAGTGTTTATATATACATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACATATAAATATATATATTCAGTGTTTATATATACATAAA  100

seq1  CACTGAATCCACAGAGAGATCATAACTCTTACTGGGACACATAATTAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATCCACAGAGAGATCATAACTCTTACTGGGACACATAATTAACA  150

seq1  TCCTAATAGTGTAACTAGATTGTTTAATAATATGCTATAAAGCTCTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATAGTGTAACTAGATTGTTTAATAATATGCTATAAAGCTCTGTTG  200

seq1  TTGGGCAATCAAATATTTAAAGCTATATGTTTTACCTGTACTTAAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAATCAAATATTTAAAGCTATATGTTTTACCTGTACTTAAGAAAT  250

seq1  ACTGATATCACCCATACTTGTCTATCAGATTATTGAAATAGTGGGTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATCACCCATACTTGTCTATCAGATTATTGAAATAGTGGGTTCTG  300

seq1  AGAACTTGAACTTTATGTAGAAGTCTTATGCAAGAAAGTAAAGGTTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGAACTTTATGTAGAAGTCTTATGCAAGAAAGTAAAGGTTGAAG  350

seq1  ACTGTTGTGAGGCAGTGGAGGCAACTGTGCTGGCAATTTGTTGGACTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTGAGGCAGTGGAGGCAACTGTGCTGGCAATTTGTTGGACTCCT  400

seq1  CTTTGGCAGAAATTATAACTGGGGCGATAGTCCTACACCTTGGCTAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCAGAAATTATAACTGGGGCGATAGTCCTACACCTTGGCTAGGAC  450

seq1  TACTTAGTTATGCAAAACTATTGCCCTGTGTTTAAACTTCAACCTCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTTATGCAAAACTATTGCCCTGTGTTTAAACTTCAACCTCATAT  500

seq1  TAGGACTACAAAGATGGTCTTTGCTACAGGGGGAGGACTCTGTTTCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTACAAAGATGGTCTTTGCTACAGGGGGAGGACTCTGTTTCTCTT  550

seq1  TTCAGTGACAACATGAATAAGTTACTTTCTGTCCTTTTCACTTTTTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGACAACATGAATAAGTTACTTTCTGTCCTTTTCACTTTTTTCAT  600

seq1  TTTTTTTTTCTCAGTGAGTATAATTGGCAGAGTTTAATGGTAAAGAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTCAGTGAGTATAATTGGCAGAGTTTAATGGTAAAGAATTC  650

seq1: chr14_93655882_93656984
seq2: B6Ng01-163F23.g_68_1173

seq1  GAATTCAATTTCATCTGACTAATGCAGAATTTGAAATATACTCTTCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTCATCTGACTAATGCAGAATTTGAAATATACTCTTCTGAA  50

seq1  AAAGTTTTTCTTCCCTTTTAGAGAGAACAGCAACTAGTTCACCGCATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTTCTTCCCTTTTAGAGAGAACAGCAACTAGTTCACCGCATTGC  100

seq1  ATTTCTGCTAGCAAAATCCTAGTAGAAAGAAATCTGGGAGAAAAAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCTAGCAAAATCCTAGTAGAAAGAAATCTGGGAGAAAAAAATTG  150

seq1  TTCCTTTATCCAGAAAATAAGTATTTCCTTTTGCCTTTTTGCCTTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTATCCAGAAAATAAGTATTTCCTTTTGCCTTTTTGCCTTGTGGA  200

seq1  TTTAAAACCAGCCACTTTAGAGTTTTCTGTGGGAACACAATCACTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACCAGCCACTTTAGAGTTTTCTGTGGGAACACAATCACTCTTTT  250

seq1  CTTAAAAAAAAAAAAAAAAAAAAAAGCATCAGTAGTCAAAATAACGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAAAAAAAAAAAAAAAAGCATCAGTAGTCAAAATAACGTGAA  300

seq1  TATGTTCACTGCCTAGAACTATTGTAAACTTACTGTACCAGGATACTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCACTGCCTAGAACTATTGTAAACTTACTGTACCAGGATACTTTA  350

seq1  AAACTACAGAAATTGATGTTTACGGCAGCAGAAGAGTACAGGGTGGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACAGAAATTGATGTTTACGGCAGCAGAAGAGTACAGGGTGGTGGT  400

seq1  AGCAGCATGGACAGATTTCTGCAGACACTCTAGATAATCCCCCCTTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCATGGACAGATTTCTGCAGACACTCTAGATAATCCCCCCTTGCCT  450

seq1  CTTAACTTTCTGGACATTGTAGTGGTCCTCAGATGCTGGGAGTGTGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTTCTGGACATTGTAGTGGTCCTCAGATGCTGGGAGTGTGCCTT  500

seq1  TTACCTTTATTCCCGCCTTTGGATGACTGCATCCCTTCGTGTTTGGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTATTCCCGCCTTTGGATGACTGCATCCCTTCGTGTTTGGACAC  550

seq1  ATGCTTTTCTTTCTCTCACTGTCTCAAGCACACACACATTACAGTGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTCTTTCTCTCACTGTCTCAAGCACACACACATTACAGTGTATA  600

seq1  TTTGGATCTTAAAGAATAGGATTTATAAGGAACATGGGTTGAGAAAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATCTTAAAGAATAGGATTTATAAGGAACATGGGTTGAGAAAATTC  650

seq1  ATAAGAAAGCTGTAAGAAGAACAGATCAAAACCTTTCAAGGGAGTGATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAGCTGTAAGAAGAACAGATCAAAACCTTTCAAGGGAGTGATAG  700

seq1  GAACTTGTTCTGTGGGTTCAAATAGAAGAAGCTTCAAACATAGGATTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGTTCTGTGGGTTCAAATAGAAGAAGCTTCAAACATAGGATTGGC  750

seq1  TATTTGTTGACATGCTGGGTTTTAAATAGAAATGCCTATGACTAAAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGACATGCTGGGTTTTAAATAGAAATGCCTATGACTAAAGAAC  800

seq1  TAAATCTTTTTCACGGGTAATCCTGTACTCACTTGCCACCAAAACTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTTTTCACGGGTAATCCTGTACTCACTTGCCACCAAAACTAATT  850

seq1  GATCTACAATTGTATCACTAGGAAAATCTTCTTAATTAGCGTAAGTCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACAATTGTATCACTAGGAAAATCTTCTTAATTAGCGTAAGTCAGT  900

seq1  TCTACAGAATCGATGATACCTTGCAATCTTAGTGATGACGATGGAACTGA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTACAGAATCGATGATACCTTGCAATCTTAGTGATGACGATGGGACTGA  950

seq1  GCAGTTATTACCTACACCACACTTGAAAATCATTCAGTTATC-TTCAGTG  999
      |||| |||||||||||||||||||| |||||||||||||||| |||||||
seq2  GCAG-TATTACCTACACCACACTTGGAAATCATTCAGTTATCTTTCAGTG  999

seq1  AATGTAGATTT-GCACAAACACAAACTCACA-CCACA-TCTATAAAATGC  1046
      ||||||||||| |||| ||||| |||||||| ||||| ||||| ||  ||
seq2  AATGTAGATTTGGCAC-AACACCAACTCACACCCACATTCTAT-AATGGC  1047

seq1  AATTCATTTTCATTA-AGGCAAATCCAATATCCCTGACTAATTTGAATAA  1095
      ||||||||||||||| |||| ||| | | || |||||||| || ||||||
seq2  AATTCATTTTCATTAGAGGCCAATTCCAAATTCCTGACTATTTGGAATAA  1097

seq1  C-AGACTAC  1103
      | |||||||
seq2  CGAGACTAC  1106