BAC Information

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BAC

Clone NameB6Ng01-163P01
Chromosome14 (Build37)
Map Location 29,440,306 - 29,441,320
singlet/doubletsinglet
Overlap genenone
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218
Downstream geneCacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163P01.g
ACCDH956400
length1,018
definitionDH956400|Mus musculus domesticus DNA, BAC clone: B6Ng01-163P01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgagcgaattaatgtgttaaaccacaagataaaacaagaggag
cctgaaacatctccaaagccttgcttttccaagacagtgaaggtaatggt
cccctgacttaaatgtcccctaccagatcttctcttccaccctccaagca
gaacttcaacatttccactttaaaagccattcttctgctactcatgggcc
atgtggattaagtagcctgacttcataccccacttcatgggtcagtgact
gagaataagccttaaatattttgctgagtctattgggaaagaaggatctt
gctttctgttactgagctgctagaataggctcagagacatctaagtgtat
gatggcatccactaagcacacagctctataatcacctgtagtaatcacag
ctgtgaacttttcaaatactttgatcccttttaacggtgcaactttgatt
tgattcagtttgaccttgagtcaggtctattgaaatagactctcaccatc
tttattttgctctatgcaatagagtcagagacaagaccaaccaaaacaac
tctcatgtccctctgtagacatggcccctcccctgtgagaccaggtgggg
attgatcacttggtttactagatccgttgatagcctatttcctaggatac
actacctcatgtgacttctgctcatgacacagaggccacagaagcatgaa
aaaacctggccctctgcaagagaaacatttataagcaaatcgtaaaatct
acctttgccaaacattgctgttgagagtgaaatccagataatctcttccc
gatggggcttctgagacagtttttcagttctgaaatacaacacttacaaa
atttttaacttcattcccaaatttctaaaaccctgcaaagcagcagactg
ggcttcccttctcaagtccaggtcaacactagccactggtgagagctggg
ctacctcaggtgaactcgctgcctctcgttccaatgtggatgttgtactt
ggatgaaaagtcctggga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29440306_29441320
seq2: B6Ng01-163P01.g_67_1084 (reverse)

seq1  TCCCAGGGCTTCTCATCCAAGTACAACATCCACATTTGTAACG-GAGGCA  49
      ||||||| ||| |||||||||||||||||||||| ||| |||| ||||||
seq2  TCCCAGGACTTTTCATCCAAGTACAACATCCACA-TTGGAACGAGAGGCA  49

seq1  GCGAGTTCACCTGGAGGTAGCCCAGCTCTCACCAGTGGCTAGTGTTGGCC  99
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  GCGAGTTCACCT-GAGGTAGCCCAGCTCTCACCAGTGGCTAGTGTTGACC  98

seq1  TGG-CCTGAGAAGGG-AGCCCAGTCTGCTGCTTTGCAGGGTTTTTAGAAA  147
      ||| | ||||||||| |||||||||||||||||||||||| |||||||||
seq2  TGGACTTGAGAAGGGAAGCCCAGTCTGCTGCTTTGCAGGG-TTTTAGAAA  147

seq1  TTTGGGAATGAAGTT-AAAATTTTGTAAGTGTTGTATTTCAGAACTGAAA  196
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTGGGAATGAAGTTAAAAATTTTGTAAGTGTTGTATTTCAGAACTGAAA  197

seq1  AACTGTCTCAGAAGCCCCATCGGGAAGAGATTATCTGGATTTCACTCTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTCAGAAGCCCCATCGGGAAGAGATTATCTGGATTTCACTCTCA  247

seq1  ACAGCAATGTTTGGC-AAGGTAGATTTTACGATTTGCTTATAAATGTTTC  295
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAGCAATGTTTGGCAAAGGTAGATTTTACGATTTGCTTATAAATGTTTC  297

seq1  TCTTGCAGAGGGCCAGGTTTTTTCATGCTTCTGTGGCCTCTGTGTCATGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGAGGGCCAGGTTTTTTCATGCTTCTGTGGCCTCTGTGTCATGA  347

seq1  GCAGAAGTCACATGAGGTAGTGTATCCTAGGAAATAGGCTATCAACGGAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTCACATGAGGTAGTGTATCCTAGGAAATAGGCTATCAACGGAT  397

seq1  CTAGT-AACCAAGTGATCAATCCCCACCTGGTCTCACAGGGGAGGGGCCA  444
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAACCAAGTGATCAATCCCCACCTGGTCTCACAGGGGAGGGGCCA  447

seq1  TGTCTACAGAGGGACATGAGAGTTGTTTTGGTTGGTCTTGTCTCTGACTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACAGAGGGACATGAGAGTTGTTTTGGTTGGTCTTGTCTCTGACTC  497

seq1  TATTGCATAGAGCAAAATAAAGATGGTGAGAGTCTATTTCAATAGACCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATAGAGCAAAATAAAGATGGTGAGAGTCTATTTCAATAGACCTG  547

seq1  ACTCAAGGTCAAACTGAATCAAATCAAAGTTGCACCGTTAAAAGGGATCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGTCAAACTGAATCAAATCAAAGTTGCACCGTTAAAAGGGATCA  597

seq1  AAGTATTTGAAAAGTTCACAGCTGTGATTACTACAGGTGATTATAGAGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTGAAAAGTTCACAGCTGTGATTACTACAGGTGATTATAGAGCT  647

seq1  GTGTGCTTAGTGGATGCCATCATACACTTAGATGTCTCTGAGCCTATTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTAGTGGATGCCATCATACACTTAGATGTCTCTGAGCCTATTCT  697

seq1  AGCAGCTCAGTAACAGAAAGCAAGATCCTTCTTTCCCAATAGACTCAGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCAGTAACAGAAAGCAAGATCCTTCTTTCCCAATAGACTCAGCA  747

seq1  AAATATTTAAGGCTTATTCTCAGTCACTGACCCATGAAGTGGGGTATGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAAGGCTTATTCTCAGTCACTGACCCATGAAGTGGGGTATGAA  797

seq1  GTCAGGCTACTTAATCCACATGGCCCATGAGTAGCAGAAGAATGGCTTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCTACTTAATCCACATGGCCCATGAGTAGCAGAAGAATGGCTTTT  847

seq1  AAAGTGGAAATGTTGAAGTTCTGCTTGGAGGGTGGAAGAGAAGATCTGGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAAATGTTGAAGTTCTGCTTGGAGGGTGGAAGAGAAGATCTGGT  897

seq1  AGGGGACATTTAAGTCAGGGGACCATTACCTTCACTGTCTTGGAAAAGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACATTTAAGTCAGGGGACCATTACCTTCACTGTCTTGGAAAAGCA  947

seq1  AGGCTTTGGAGATGTTTCAGGCTCCTCTTGTTTTATCTTGTGGTTTAACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGGAGATGTTTCAGGCTCCTCTTGTTTTATCTTGTGGTTTAACA  997

seq1  CATTAATTCGCTCAGGAATTC  1015
      |||||||||||||||||||||
seq2  CATTAATTCGCTCAGGAATTC  1018