BAC Information

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BAC

Clone NameB6Ng01-163P11
Chromosome14 (Build37)
Map Location 104,554,695 - 104,695,081
singlet/doubletdoublet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163P11.bB6Ng01-163P11.g
ACCDH956417DH956418
length1,124613
definitionDH956417|Mus musculus domesticus DNA, BAC clone: B6Ng01-163P11, 5' end.DH956418|Mus musculus domesticus DNA, BAC clone: B6Ng01-163P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,554,695 - 104,555,827)(104,694,469 - 104,695,081)
sequence
gaattcaaataatttctgtccaattaagcagggctgggatgcaatctgtc
caattggtgcttaatgagttgttctccatggcccacaccaaccccatgat
agaattagtaggttttattgttctcaggcactatcaaatatgataaatca
tcataatgttcaacaagtttgacaagattctcccaccagaatttataaag
tgatgagttgcttcaaatattaacatgcttaataaatattgaatgagctc
ctatggcaaaaaacaaaacttatttacaaagcaaaggaaaacaagcaaac
agaaatgtaataatcactgcttctagttgaggaaggtttgtctccagcaa
aggaaaatctttaccctccttataataataattaaagtcagttaaacatt
tggccagcttattatcattgctttgactaagatgtttatacatgtctcat
aattatacctaaatgatattttagaaagagaatctgcaacttctaaacca
gtgttgtagaggacagagaagcctctcttccaagcctggctggccagctg
gatattttattccttttgggattcggctgtgagatggagaggcatcaatg
gtttttctcctgcgagtgtctaaaaccacaagcatcactttaaaagtgct
tagcaatgttgatgtcacttcttggaaataaagctgccacaaaaagcaca
tttctgaaagctatgaaggggaaagggcaatgtgaatatacactaaaaat
aaaagcactgggtagccactttcaaggagcattagaattaagtacacagc
cttatagaagcatatttataaattcatttgccttccaaatatactaagat
gtcttcattcttcaagagttttgtttttaattgacaagattccatgtctg
tgatgtacaacatgtgttcttatgtgtatatcatatggaactgttaaatc
aagctgaagttgaggaaggaaactgtaaactgtcattcctatcttatgtc
aacaaatagaaccagacgaacacatttttttcatacacatagaaacatag
ggtcagcaagaagtttgcaaaaggtttctaagagctgtttatgtctggct
gagggccttttgtagagaggcaga
gaattcactgggaaaagatcctccacttgggtgtttccaagaatacgtct
ttgaaaaagtgctaaggatatctagagtgcagaggaacctcgaggtaatt
ttagagaatctagggacacttttctctgggaaaacagcattctgtgacaa
gccagtagcactggaatttggaaccaggccacagattgctttatagtccc
caaaattgctagttagtgtcataaaaagtgcaaatcacttcagcttgcca
ccctccttcatctgagctaacttctttatggcatttccagaaatgaagcc
agcaacatgtgtagtggaggctcaagcagactaggggtatgctcatcccc
agattttaattaagcagtttttttttttggtcctttgttttgcttctaat
cctgcgactctctagtagtaacatctcttctgcacctatttgcttcgtat
atgaatacctaactctgtccttactctccggttcttttcaatctaggaaa
agaatgctgcatctttgggacttcgctcctagttgataaggatgaaacca
tttcagaatgcctgtggtgtgtgctcatgagcaatgccgaggtgggtggg
gtttggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104554695_104555827
seq2: B6Ng01-163P11.b_45_1168

seq1  GAATTCAAATAATTTCTGTCCAATTAAGCAGGGCTGGGATGCAATCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAATTTCTGTCCAATTAAGCAGGGCTGGGATGCAATCTGTC  50

seq1  CAATTGGTGCTTAATGAGTTGTTCTCCATGGCCCACACCAACCCCATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGTGCTTAATGAGTTGTTCTCCATGGCCCACACCAACCCCATGAT  100

seq1  AGAATTAGTAGGTTTTATTGTTCTCAGGCACTATCAAATATGATAAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGTAGGTTTTATTGTTCTCAGGCACTATCAAATATGATAAATCA  150

seq1  TCATAATGTTCAACAAGTTTGACAAGATTCTCCCACCAGAATTTATAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGTTCAACAAGTTTGACAAGATTCTCCCACCAGAATTTATAAAG  200

seq1  TGATGAGTTGCTTCAAATATTAACATGCTTAATAAATATTGAATGAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGTTGCTTCAAATATTAACATGCTTAATAAATATTGAATGAGCTC  250

seq1  CTATGGCAAAAAACAAAACTTATTTACAAAGCAAAGGAAAACAAGCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCAAAAAACAAAACTTATTTACAAAGCAAAGGAAAACAAGCAAAC  300

seq1  AGAAATGTAATAATCACTGCTTCTAGTTGAGGAAGGTTTGTCTCCAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTAATAATCACTGCTTCTAGTTGAGGAAGGTTTGTCTCCAGCAA  350

seq1  AGGAAAATCTTTACCCTCCTTATAATAATAATTAAAGTCAGTTAAACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATCTTTACCCTCCTTATAATAATAATTAAAGTCAGTTAAACATT  400

seq1  TGGCCAGCTTATTATCATTGCTTTGACTAAGATGTTTATACATGTCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCTTATTATCATTGCTTTGACTAAGATGTTTATACATGTCTCAT  450

seq1  AATTATACCTAAATGATATTTTAGAAAGAGAATCTGCAACTTCTAAACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACCTAAATGATATTTTAGAAAGAGAATCTGCAACTTCTAAACCA  500

seq1  GTGTTGTAGAGGACAGAGAAGCCTCTCTTCCAAGCCTGGCTGGCCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTAGAGGACAGAGAAGCCTCTCTTCCAAGCCTGGCTGGCCAGCTG  550

seq1  GATATTTTATTCCTTTTGGGATTCGGCTGTGAGATGGAGAGGCATCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTATTCCTTTTGGGATTCGGCTGTGAGATGGAGAGGCATCAATG  600

seq1  GTTTTTCTCCTGCGAGTGTCTAAAACCACAAGCATCACTTTAAAAGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTCCTGCGAGTGTCTAAAACCACAAGCATCACTTTAAAAGTGCT  650

seq1  TAGCAATGTTGATGTCACTTCTTGGAAATAAAGCTGCCACAAAAAGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGTTGATGTCACTTCTTGGAAATAAAGCTGCCACAAAAAGCACA  700

seq1  TTTCTGAAAGCTATGAAGGGGAAAGGGCAATGTGAATATACACTAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAAGCTATGAAGGGGAAAGGGCAATGTGAATATACACTAAAAAT  750

seq1  AAAAGCACTGGGTAGCCACTTTCAAGGAGCATTAGAATTAAGTACACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACTGGGTAGCCACTTTCAAGGAGCATTAGAATTAAGTACACAGC  800

seq1  CTTATAGAAGCATATTTATAAATTCATTTGCCTTCCAAATATACTAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGAAGCATATTTATAAATTCATTTGCCTTCCAAATATACTAAGAT  850

seq1  GTCTTCATTCTTCAAGAGTTTTGTTTTTAATTGACAAGATTCCATGTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATTCTTCAAGAGTTTTGTTTTTAATTGACAAGATTCCATGTCTG  900

seq1  TGATGTACAACATGTGTTCTTATGTGTATATCATATGGAACTGTTAAATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTACAACATGTGTTCTTATGTGTATATCATATGGAACTGTTAAATC  950

seq1  AAGCTGAAGGTTGAGGAAGGAAACTGTTAAACTGTCATTCCTATCTTATG  1000
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  AAGCTGAA-GTTGAGGAAGGAAACTG-TAAACTGTCATTCCTATCTTATG  998

seq1  TTCAACAAATAGAACCAAGACGAACACA-TGTTTTCATACACATAGAAAC  1049
       ||||||||||||||| ||||||||||| | |||||||||||||||||||
seq2  -TCAACAAATAGAACC-AGACGAACACATTTTTTTCATACACATAGAAAC  1046

seq1  ATAGGGGCCAGCAAAGAGTTTTGCAAAAAGGTTTCTAAGAGCTGTTAATG  1099
      ||| ||| |||| ||||  ||||| ||||||||||||||||||||| |||
seq2  ATA-GGGTCAGC-AAGAAGTTTGC-AAAAGGTTTCTAAGAGCTGTTTATG  1093

seq1  TCCTGGCTGAGGG-CTTTTGTAGGAAGAGGGCAGA  1133
      | ||||||||||| |||||||||  ||| ||||||
seq2  T-CTGGCTGAGGGCCTTTTGTAG--AGA-GGCAGA  1124

seq1: chr14_104694469_104695081
seq2: B6Ng01-163P11.g_69_681 (reverse)

seq1  CCCCCCCCCAAACCCCACCCACCTCGGCATTGCTCATGAGCACACACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCAAACCCCACCCACCTCGGCATTGCTCATGAGCACACACCAC  50

seq1  AGGCATTCTGAAATGGTTTCATCCTTATCAACTAGGAGCGAAGTCCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTCTGAAATGGTTTCATCCTTATCAACTAGGAGCGAAGTCCCAAA  100

seq1  GATGCAGCATTCTTTTCCTAGATTGAAAAGAACCGGAGAGTAAGGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGCATTCTTTTCCTAGATTGAAAAGAACCGGAGAGTAAGGACAGA  150

seq1  GTTAGGTATTCATATACGAAGCAAATAGGTGCAGAAGAGATGTTACTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTATTCATATACGAAGCAAATAGGTGCAGAAGAGATGTTACTACT  200

seq1  AGAGAGTCGCAGGATTAGAAGCAAAACAAAGGACCAAAAAAAAAAACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCGCAGGATTAGAAGCAAAACAAAGGACCAAAAAAAAAAACTGC  250

seq1  TTAATTAAAATCTGGGGATGAGCATACCCCTAGTCTGCTTGAGCCTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAAATCTGGGGATGAGCATACCCCTAGTCTGCTTGAGCCTCCAC  300

seq1  TACACATGTTGCTGGCTTCATTTCTGGAAATGCCATAAAGAAGTTAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGTTGCTGGCTTCATTTCTGGAAATGCCATAAAGAAGTTAGCTC  350

seq1  AGATGAAGGAGGGTGGCAAGCTGAAGTGATTTGCACTTTTTATGACACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGGAGGGTGGCAAGCTGAAGTGATTTGCACTTTTTATGACACTA  400

seq1  ACTAGCAATTTTGGGGACTATAAAGCAATCTGTGGCCTGGTTCCAAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAATTTTGGGGACTATAAAGCAATCTGTGGCCTGGTTCCAAATTC  450

seq1  CAGTGCTACTGGCTTGTCACAGAATGCTGTTTTCCCAGAGAAAAGTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTACTGGCTTGTCACAGAATGCTGTTTTCCCAGAGAAAAGTGTCC  500

seq1  CTAGATTCTCTAAAATTACCTCGAGGTTCCTCTGCACTCTAGATATCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTCTCTAAAATTACCTCGAGGTTCCTCTGCACTCTAGATATCCTT  550

seq1  AGCACTTTTTCAAAGACGTATTCTTGGAAACACCCAAGTGGAGGATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTTTCAAAGACGTATTCTTGGAAACACCCAAGTGGAGGATCTTT  600

seq1  TCCCAGTGAATTC  613
      |||||||||||||
seq2  TCCCAGTGAATTC  613