BAC Information

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BAC

Clone NameB6Ng01-164E13
ChromosomeY (Build37)14 (Build37)
Map Location 573,321 - 573,5224,606,757 - 4,607,899
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164E13.bB6Ng01-164E13.g
ACCDH956651DH956652
length4941,141
definitionDH956651|Mus musculus domesticus DNA, BAC clone: B6Ng01-164E13, 5' end.DH956652|Mus musculus domesticus DNA, BAC clone: B6Ng01-164E13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,522)(4,606,757 - 4,607,899)
sequence
acatgatatgtactttcaggtaagtggattttatcccagaaacttagaat
acccaatatgagatacaatttgcaaaacacaagaaactcaagaagaaata
agaccgaagtgtggacactttgccccttcttataattgggaacaaaacac
ccaggaaagagttacagagacaaaatttggagttgagaagaaaggatgta
tcatctagaaactgccatagaagtggatgctcacagtcagctattggatg
gatcacatggccgccaatggaggagctagagaaagtacccaaggagctaa
agggatctgcaaccctataggtggaacaaaaatatgaactaaccagtaca
ctcccccccaatcccccccccctctgccggagctcgtgtctcagtctgag
tatgtatctgaagatggcctagttggccatcagtggaagaagaggaccct
tgttcttgcaaagtttatatgcctcattacaggggaacaccagg
gaattcaccacagaactcaaatatttcatcaagttggacacataatgcaa
gtgcattgttgcttgaagtatggtttccagtcctaagcattggcattgtc
agcagactgtaaggcaggcaattcctcaggtcctaccacatacccttatg
accagaatatagagagagtcacacacacacacacatgcatgcacacagaa
tcagggtgtgtttgcagggagaatgagaaagtacaatttaaatagaatcc
agaggaaatgcagaggacattctgtttataagacccaaaatctgagaaaa
gtattaatgagcctaagaccttccatcatttatcagaatggaccaaatgg
gaccaagctttcctggtgatataggaagcttcagcaagcaacacctgcca
gacaattacaaagctttgcgaacaaacaaacaacgaactcaagcaagcaa
acaatcaatcaaaacctcacagcaactaatatctcactcaaacggtcaca
tgtcagtgcctctatcaatacatgctgagacatcacatcctcttcaatcc
ctcagttgtaggctttcattttcatataaaaaaaatagaataccctttgt
ccgcagctcactcctgctctgacttcaagttcagcctgtgagaatgttta
gtgagaaaaggttgggcacagtgacaccctggagttacagtctccaagta
ccataaaatttaataagaataaattgtaggccataccatagactcaagaa
attgaccatgatgtttgacataatgaaaaatacctcttgtgcaaagcttt
ctcactgatgaagatcaggtgatcttgtagctcatttttcccactggtca
tcggctgagtggttaggctttccactttcctcacccatcttctgaacagg
agtgtggggatgatggtagtacaccagcagcccctatgggtagatgaacc
acaagtgattatcatactgtcaaggctcaaagcattgacagaacactgag
tcctatcagacatttgacaaaacaggaatgcatggtgacccagtcattcc
tctttcatttcatttttgcaatgcatctatggaccagaacaggatcccca
gcttattcattgctgctatgagatttaattagcgcgtactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573522
seq2: B6Ng01-164E13.b_319_546

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGT-------------ATCC--  84
      |||| |||||||| |||||||| ||||||||             ||||  
seq2  ATAGGTGGAACAAAAATATGAACTAACCAGTACACTCCCCCCCAATCCCC  100

seq1  ----------ACAGAGCTCATGTCTCTAGCTGCATATGTATCAGAAGATG  124
                 | |||||| ||||||   |||  |||||||| |||||||
seq2  CCCCCCTCTGCCGGAGCTCGTGTCTCAGTCTGAGTATGTATCTGAAGATG  150

seq1  GCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTT  174
      |||||||||||||||| ||| |  ||||| |||||| ||||||||| |||
seq2  GCCTAGTTGGCCATCAGTGGAAGAAGAGGACCCTTGTTCTTGCAAAGTTT  200

seq1  ATATGCCCCAGTACAGGGGAACACCAGG  202
      ||||||| || |||||||||||||||||
seq2  ATATGCCTCATTACAGGGGAACACCAGG  228

seq1: chr14_4606757_4607899
seq2: B6Ng01-164E13.g_68_1208 (reverse)

seq1  CAGTACTGCCTAATTAAA--TCATACGCAGCTATGAATAAGCCTGAGGAT  48
      ||||||   |||||||||  ||||| ||||| ||||||||| ||| ||||
seq2  CAGTACGCGCTAATTAAATCTCATA-GCAGCAATGAATAAG-CTGGGGAT  48

seq1  CCTGTCCTTGGTCACAT-GATGCATGTGC-AAAGTGAAATGAAAGAGGAA  96
      ||||| | ||||| ||| ||||||| ||| ||| ||||||||||||||||
seq2  CCTGTTC-TGGTC-CATAGATGCAT-TGCAAAAATGAAATGAAAGAGGAA  95

seq1  TGACTGGGTCA-CATGCATTCCTGTTTTGTCAGATGTCTGTATAGGACTC  145
      ||||||||||| |||||||||||||||||||| ||||||| |||||||||
seq2  TGACTGGGTCACCATGCATTCCTGTTTTGTCAAATGTCTG-ATAGGACTC  144

seq1  AGTGTTCTGTCAATGCTCTGAGCCTTGACAGTATGTATATTCACTTGT-G  194
      ||||||||||||||||| ||||||||||||||||| ||| |||||||| |
seq2  AGTGTTCTGTCAATGCTTTGAGCCTTGACAGTATG-ATAATCACTTGTGG  193

seq1  TTCATCTACCCATAGGGGCTGCTGGTGTACTACCATCATCCCCAACACTC  244
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCATCTACCCATAGGGGCTGCTGGTGTACTACCATCATCCCC-ACACTC  242

seq1  CTGTTCAGAAGATGGGTGAGGAAAGTGGAAAGCCTAACCACTCAGCCGAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGAAGATGGGTGAGGAAAGTGGAAAGCCTAACCACTCAGCCGAT  292

seq1  GACCAGTGGGAAAAATGAGCTACAAGATCACCTGATCTTCATCAGTGAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTGGGAAAAATGAGCTACAAGATCACCTGATCTTCATCAGTGAGA  342

seq1  AAGCTTTGCACAAGAGGTATTTTTCATTATGTCAAACATCATGGTCAATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGCACAAGAGGTATTTTTCATTATGTCAAACATCATGGTCAATT  392

seq1  TCTTGAGTCTATGGTATGGCCTACAATTTATTCTTATTAAATTTTATGGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTCTATGGTATGGCCTACAATTTATTCTTATTAAATTTTATGGT  442

seq1  ACTTGGAGACTGTAACTCCAGGGTGTCACTGTGCCCAACCTTTTCTCACT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGACTGTAACTCCAGGGTGTCACTGTGCCCAACCTTTTCTCACT  492

seq1  AAACATTCTCACAGGCTGAACTTGAAGTCAGAGCAGGAGTGAGCTGCGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCTCACAGGCTGAACTTGAAGTCAGAGCAGGAGTGAGCTGCGGA  542

seq1  CAAAGGGTATTCTATTTTTTTTATATGAAAATGAAAGCCTACAACTGAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGTATTCTATTTTTTTTATATGAAAATGAAAGCCTACAACTGAGG  592

seq1  GATTGAAGAGGATGTGATGTCTCAGCATGTATTGATAGAGGCACTGACAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAGAGGATGTGATGTCTCAGCATGTATTGATAGAGGCACTGACAT  642

seq1  GTGACCGTTTGAGTGAGATATTAGTTGCTGTGAGGTTTTGATTGATTGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCGTTTGAGTGAGATATTAGTTGCTGTGAGGTTTTGATTGATTGTT  692

seq1  TGCTTGCTTGAGTTCGTTGTTTGTTTGTTCGCAAAGCTTTGTAATTGTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTTGAGTTCGTTGTTTGTTTGTTCGCAAAGCTTTGTAATTGTCT  742

seq1  GGCAGGTGTTGCTTGCTGAAGCTTCCTATATCACCAGGAAAGCTTGGTCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGTTGCTTGCTGAAGCTTCCTATATCACCAGGAAAGCTTGGTCC  792

seq1  CATTTGGTCCATTCTGATAAATGATGGAAGGTCTTAGGCTCATTAATACT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGTCCATTCTGATAAATGATGGAAGGTCTTAGGCTCATTAATACT  842

seq1  TTTCTCAGATTTTGGGTCTTATAAACAGAATGTCCTCTGCATTTCCTCTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGATTTTGGGTCTTATAAACAGAATGTCCTCTGCATTTCCTCTG  892

seq1  GATTCTATTTAAATTGTACTTTCTCATTCTCCCTGCAAACACACCCTGAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATTTAAATTGTACTTTCTCATTCTCCCTGCAAACACACCCTGAT  942

seq1  TCTGTGTGCATGCATGTGTGTGTGTGTGTGACTCTCTCTATATTCTGGTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGCATGCATGTGTGTGTGTGTGTGACTCTCTCTATATTCTGGTC  992

seq1  ATAAGGGTATGTGGTAGGACCTGAGGAATTGCCTGCCTTACAGTCTGCTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGTATGTGGTAGGACCTGAGGAATTGCCTGCCTTACAGTCTGCTG  1042

seq1  ACAATGCCAATGCTTAGGACTGGAAACCATACTTCAAGCAACAATGCACT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCCAATGCTTAGGACTGGAAACCATACTTCAAGCAACAATGCACT  1092

seq1  TGCATTATGTGTCCAACTTGATGAAATATTTGAGTTCTGTGGTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATGTGTCCAACTTGATGAAATATTTGAGTTCTGTGGTGAATTC  1141