BAC Information

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BAC

Clone NameB6Ng01-164M15
Chromosome14 (Build37)
Map Location 48,347,885 - 48,495,883
singlet/doubletdoublet
Overlap geneKtn1
Upstream geneCdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787
Downstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164M15.bB6Ng01-164M15.g
ACCDH957021DH957022
length9751,072
definitionDH957021|Mus musculus domesticus DNA, BAC clone: B6Ng01-164M15, 5' end.DH957022|Mus musculus domesticus DNA, BAC clone: B6Ng01-164M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,495,341 - 48,495,883)(48,347,885 - 48,348,964)
sequence
gaattcttttttttcttaataacttattttttattcactttacatcgcac
tcacagcccccctccatcccattcacagcccccctccatcctactcacag
cccccttcatcctctcctcccagtcctgcccttacaaattcctcccccac
cctccccttcccttctcagagaagccccagaaatcccctcttgggtacca
ccccactctgaggcacctagtcccagcaggactaggcacatcctctcctg
ctgagacacaaccaagcagttcaagtcgggggaagaatccaatggcaggc
aaccgagtcagagacagacaacctgattgttaggggactcacatgaagac
catgttgcacatctgctacaaatgtgaagggaacctaggtctaggctgtg
caagctctttggtggttcagtctctgtgatccctgctgggccccagatta
gttgactctgtaggtcttcttgtaatgtccttgaccctcctgttctttca
attcttttctccagttttccacaagactgccagagccctgattgatgttt
gactgtggatctctgcatctgttcccatcgctgctggatgaaggctctca
ggagacagttatgctaggttcctatctgcaagcatagcagagtatcatta
atggtgtcaggggttggctgcctcccatgggatagatctcaagttggggc
agtcattggttggctcttccctcagtctctgctccatctttatccctgtg
catcttgagggcaggacaaatttggagttgaaggttttgtgagtgagtta
atgtccccctctctccactggaagtcctatctggctacaggagacaatca
ctccagtttctatatccccaacgggtaggagtttcagctagggttgccgc
cacatactccccacagcttcccttgtccaggcctccagctagttccagag
tgcacctctgatttccattctcttt
tttttagagttgtatgaggaatagagtactgtgtgcatgcacatgccccc
atattttcaattcttgttgcatttaccagtgctttgttttagcaataccc
atttccagtgcaatataagacgagttttctgcatgtatttggtgtgtatc
acactgactaggtctgtgatactccaaagttgtatgcctatagaatgttt
tggaagaatctttgttttttgttttgttttgtttttttaagacatggtct
ctctctttagccctggctgtcctagaactcactttgtagaccggactgac
ctcgaagtgagatatccacctgcctctgcctcccaagtgctggatttaag
gtgtctgccacggttcctagctttgtttttgtttttgagacagggtttct
ttgtgtaaccttggctatcctagaactacctctatagaccagactgccct
caaactcaaagagatcagcttgcctctacttccccagtgctgggttaaag
acttgtgccactactgagcagctaacagattcatttttaactagagagtt
ttcttcttagttttggtgcttagagctgactcagcagttgtagcctttgt
gccagatctgtaggctggtggttacctccattttgttggttggcctgtgt
taattacccttctgctatcaggagacagctttaagtaacaatttctgttt
ttctttcctgtcttgtgattgtaatagttactttatttttaaataaaatg
aatttgctgggccatccatgcacgctgttgtatggtggtcttcaccagag
agaactgagctctctcagctaagtacagaaggcggcagaagctttagcca
tttagtgtccttccccaagtgagtcggccaagcgggaatccccgccattt
taaattctactggactatttgttgttttatttatttatcatctacttctt
acctttttagatccaagtttttgaaagtcattgccttgtggttgggaggc
caaaatcagtaacaccacataccacacaccttttcaaacaggtgtctccg
ggttggcctggctgccctggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48495341_48495883
seq2: B6Ng01-164M15.b_47_589 (reverse)

seq1  AATCAGGGCTCTGGCAGTCTTGTGGAAAACTGGAGAAAAGAATTGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGCTCTGGCAGTCTTGTGGAAAACTGGAGAAAAGAATTGAAAGA  50

seq1  ACAGGAGGGTCAAGGACATTACAAGAAGACCTACAGAGTCAACTAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGGGTCAAGGACATTACAAGAAGACCTACAGAGTCAACTAATCTG  100

seq1  GGGCCCAGCAGGGATCACAGAGACTGAACCACCAAAGAGCTTGCACAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCAGCAGGGATCACAGAGACTGAACCACCAAAGAGCTTGCACAGCC  150

seq1  TAGACCTAGGTTCCCTTCACATTTGTAGCAGATGTGCAACATGGTCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTAGGTTCCCTTCACATTTGTAGCAGATGTGCAACATGGTCTTCA  200

seq1  TGTGAGTCCCCTAACAATCAGGTTGTCTGTCTCTGACTCGGTTGCCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCCCCTAACAATCAGGTTGTCTGTCTCTGACTCGGTTGCCTGCC  250

seq1  ATTGGATTCTTCCCCCGACTTGAACTGCTTGGTTGTGTCTCAGCAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATTCTTCCCCCGACTTGAACTGCTTGGTTGTGTCTCAGCAGGAGA  300

seq1  GGATGTGCCTAGTCCTGCTGGGACTAGGTGCCTCAGAGTGGGGTGGTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGCCTAGTCCTGCTGGGACTAGGTGCCTCAGAGTGGGGTGGTACC  350

seq1  CAAGAGGGGATTTCTGGGGCTTCTCTGAGAAGGGAAGGGGAGGGTGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGGGATTTCTGGGGCTTCTCTGAGAAGGGAAGGGGAGGGTGGGGG  400

seq1  AGGAATTTGTAAGGGCAGGACTGGGAGGAGAGGATGAAGGGGGCTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTGTAAGGGCAGGACTGGGAGGAGAGGATGAAGGGGGCTGTGAG  450

seq1  TAGGATGGAGGGGGGCTGTGAATGGGATGGAGGGGGGCTGTGAGTGCGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGGAGGGGGGCTGTGAATGGGATGGAGGGGGGCTGTGAGTGCGAT  500

seq1  GTAAAGTGAATAAAAAATAAGTTATTAAGAAAAAAAAGAATTC  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTGAATAAAAAATAAGTTATTAAGAAAAAAAAGAATTC  543

seq1: chr14_48347885_48348964
seq2: B6Ng01-164M15.g_75_1146

seq1  TTTTTAGAGTTGTATGAGGAATAGAGTACTGTGTGCATGCACATGCCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAGTTGTATGAGGAATAGAGTACTGTGTGCATGCACATGCCCCC  50

seq1  ATATTTTCAATTCTTGTTGCATTTACCAGTGCTTTGTTTTAGCAATACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCAATTCTTGTTGCATTTACCAGTGCTTTGTTTTAGCAATACCC  100

seq1  ATTTCCAGTGCAATATAAGACGAGTTTTCTGCATGTATTTGGTGTGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGTGCAATATAAGACGAGTTTTCTGCATGTATTTGGTGTGTATC  150

seq1  ACACTGACTAGGTCTGTGATACTCCAAAGTTGTATGCCTATAGAATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACTAGGTCTGTGATACTCCAAAGTTGTATGCCTATAGAATGTTT  200

seq1  TGGAAGAATCTTTGTTTTTTGTTTTGTTTTGTTTTTTTAAGACATGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAATCTTTGTTTTTTGTTTTGTTTTGTTTTTTTAAGACATGGTCT  250

seq1  CTCTCTTTAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCGGACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCGGACTGAC  300

seq1  CTCGAAGTGAGATATCCACCTGCCTCTGCCTCCCAAGTGCTGGATTTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGTGAGATATCCACCTGCCTCTGCCTCCCAAGTGCTGGATTTAAG  350

seq1  GTGTCTGCCACGGTTCCTAGCTTTGTTTTTGTTTTTGAGACAGGGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCCACGGTTCCTAGCTTTGTTTTTGTTTTTGAGACAGGGTTTCT  400

seq1  TTGTGTAACCTTGGCTATCCTAGAACTACCTCTATAGACCAGACTGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAACCTTGGCTATCCTAGAACTACCTCTATAGACCAGACTGCCCT  450

seq1  CAAACTCAAAGAGATCAGCTTGCCTCTACTTCCCCAGTGCTGGGTTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAAAGAGATCAGCTTGCCTCTACTTCCCCAGTGCTGGGTTAAAG  500

seq1  ACTTGTGCCACTACTGAGCAGCTAACAGATTCATTTTTAACTAGAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGCCACTACTGAGCAGCTAACAGATTCATTTTTAACTAGAGAGTT  550

seq1  TTCTTCTTAGTTTTGGTGCTTAGAGCTGACTCAGCAGTTGTAGCCTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTAGTTTTGGTGCTTAGAGCTGACTCAGCAGTTGTAGCCTTTGT  600

seq1  GCCAGATCTGTAGGCTGGTGGTTACCTCCATTTTGTTGGTTGGCCTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATCTGTAGGCTGGTGGTTACCTCCATTTTGTTGGTTGGCCTGTGT  650

seq1  TAATTACCCTTCTGCTATCAGGAGACAGCTTTAAGTAACAATTTCTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACCCTTCTGCTATCAGGAGACAGCTTTAAGTAACAATTTCTGTTT  700

seq1  TTCTTTCCTGTCTTGTGATTGTAATAGTTACTTTATTTTTAAATAAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTGTCTTGTGATTGTAATAGTTACTTTATTTTTAAATAAAATG  750

seq1  AATTTGCTGGGCCATCCATGCACGCTGTTGTATGGTGGTCTTCACCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTGGGCCATCCATGCACGCTGTTGTATGGTGGTCTTCACCAGAG  800

seq1  AGAACTGAGCTCTCTCAGCTAAGTACAGAAGGCGGCAGAAGCTTTAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAGCTCTCTCAGCTAAGTACAGAAGGCGGCAGAAGCTTTAGCCA  850

seq1  TTTAGTGTCCTTCCCCAAGTGAGTCGGCCAAGCGGGAATCCCCGCCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTCCTTCCCCAAGTGAGTCGGCCAAGCGGGAATCCCCGCCATTT  900

seq1  TAAATTCTACTGGACTTATTTGTTTGTTTTATTTATTTATTCATCTACTT  950
      ||||||||||||||| |||||| |||||||||||||||| ||||||||||
seq2  TAAATTCTACTGGAC-TATTTG-TTGTTTTATTTATTTA-TCATCTACTT  947

seq1  CTTACCTTTTTAAGATTCCAAAAGTTTTTTGAAAGTCA-TGCC-TGTGGT  998
      ||||||||||| ||| |||||    ||||||||||||| |||| ||||||
seq2  CTTACCTTTTT-AGA-TCCAA---GTTTTTGAAAGTCATTGCCTTGTGGT  992

seq1  TGGGAGGCAAAAATCAGTAACACACACATACACACACACTTTTCAAAACA  1048
      |||||||| |||||||||||||| ||||||| ||||||| |||  |||||
seq2  TGGGAGGCCAAAATCAGTAACAC-CACATAC-CACACACCTTTTCAAACA  1040

seq1  GGTTTCTCCGTGTTGCCCTGGCTGTCCTGGAA  1080
      ||| |||||| |||| |||||||| |||||||
seq2  GGTGTCTCCGGGTTGGCCTGGCTGCCCTGGAA  1072