BAC Information

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BAC

Clone NameB6Ng01-164O06
Chromosome13 (Build37)14 (Build37)
Map Location 37,666,166 - 37,667,12368,948,292 - 68,948,432
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNrn1, F13a1, Ly86, LOC100042794, LOC100042800
Downstream geneLOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164O06.bB6Ng01-164O06.g
ACCDH957099DH957100
length957173
definitionDH957099|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O06, 5' end.DH957100|Mus musculus domesticus DNA, BAC clone: B6Ng01-164O06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,666,166 - 37,667,123)(68,948,292 - 68,948,432)
sequence
gaattctctgtgctgcctgatttttctggagaggcaggaacagatgtctc
ctcatctcagatagggcatccagggcaggtccaagaaacaactccacccc
agtctaacttggtgagggaaggaacgtattgtgattacctggcaatggct
tgtgatggaaggacagatgactcaagggaactgcctcactacacagccca
cccagcatggatgagggctgagaacacctcactgctggaccctgcacaac
ctgcagggagcgccactgaagaaaatctcccccacccccaccccagaaac
tgtttactgcttgtctgacctcggggagaggacaggccatgtgcatcttc
taacactgggtttgaggaggcttgtaagttttgtgggccttttagcttta
agagactctttcctcccttagaagggaatgttgagattttgaggaaacaa
ctacacaggcatcctaccttcccatccactttccccattaaattaaattt
gtccgtaaagcaagctatcagaaactcagtgttatttctgtcaagaagtc
ttaacttgcccttcaatgtagttttttgctctgtaatgaacatcctccat
accctggctttgtctcctgtctgttttcctcgatgcccacaggaacctga
aactctgagtagagagcccagtctgtttcttttatctttgagaactccct
caccaccagcagccctgtgaggatgggcatatcttgagtgtatgagatag
gtctagacgagtgccactggacctgggtaacagtagaaaatgtggcttcc
gaaaagcaaatgagctaataatccactgtctaagtcagggtttctattcc
tccacaaaacatcatgaccaagttggggaggaaagggtttattcagctta
cagttcacattgctgttcatcacccaaggaagtcaggactgggattcaca
cagggca
attaaaaatgactaaatatccccccccctttttttttcaagacagggttt
ctctgaatggctctggctgtcctggaactcactttgtagaccaggctggc
ctcgaattcagaaatccacctgcctctgcctcctgagtgctgggattaaa
ggtgtgcgccaccacgcctggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_37666166_37667123
seq2: B6Ng01-164O06.b_48_1004

seq1  GAATTCTCTGTGCTGCCTGATTTTTCTGGAGAGGCAGGAACAGATGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGCTGCCTGATTTTTCTGGAGAGGCAGGAACAGATGTCTC  50

seq1  CTCATCTCAGATAGGGCATCCAGGGCAGGTCCAAGAAACAACTCCACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCAGATAGGGCATCCAGGGCAGGTCCAAGAAACAACTCCACCCC  100

seq1  AGTCTAACTTGGTGAGGGAAGGAACGTATTGTGATTACCTGGCAATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAACTTGGTGAGGGAAGGAACGTATTGTGATTACCTGGCAATGGCT  150

seq1  TGTGATGGAAGGACAGATGACTCAAGGGAACTGCCTCACTACACAGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGAAGGACAGATGACTCAAGGGAACTGCCTCACTACACAGCCCA  200

seq1  CCCAGCATGGATGAGGGCTGAGAACACCTCACTGCTGGACCCTGCACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATGGATGAGGGCTGAGAACACCTCACTGCTGGACCCTGCACAAC  250

seq1  CTGCAGGGAGCGCCACTGAAGAAAATCTCCCCCACCCCCACCCCAGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGAGCGCCACTGAAGAAAATCTCCCCCACCCCCACCCCAGAAAC  300

seq1  TGTTTACTGCTTGTCTGACCTCGGGGAGAGGACAGGCCATGTGCATCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTGCTTGTCTGACCTCGGGGAGAGGACAGGCCATGTGCATCTTC  350

seq1  TAACACTGGGTTTGAGGAGGCTTGTAAGTTTTGTGGGCCTTTTAGCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTGGGTTTGAGGAGGCTTGTAAGTTTTGTGGGCCTTTTAGCTTTA  400

seq1  AGAGACTCTTTCCTCCCTTAGAAGGGAATGTTGAGATTTTGAGGAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCTTTCCTCCCTTAGAAGGGAATGTTGAGATTTTGAGGAAACAA  450

seq1  CTACACAGGCATCCTACCTTCCCATCCACTTTCCCCATTAAATTAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGGCATCCTACCTTCCCATCCACTTTCCCCATTAAATTAAATTT  500

seq1  GTCCGTAAAGCAAGCTATCAGAAACTCAGTGTTATTTCTGTCAAGAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTAAAGCAAGCTATCAGAAACTCAGTGTTATTTCTGTCAAGAAGTC  550

seq1  TTAACTTGCCCTTCAATGTAGTTTTTTGCTCTGTAATGAACATCCTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTGCCCTTCAATGTAGTTTTTTGCTCTGTAATGAACATCCTCCAT  600

seq1  ACCCTGGCTTTGTCTCCTGTCTGTTTTCCTCGATGCCCACAGGAACCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGCTTTGTCTCCTGTCTGTTTTCCTCGATGCCCACAGGAACCTGA  650

seq1  AACTCTGAGTAGAGAGCCCAGTCTGTTTCTTTTATCTTTGAGAACTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAGTAGAGAGCCCAGTCTGTTTCTTTTATCTTTGAGAACTCCCT  700

seq1  CACCACCAGCAGCCCTGTGAGGATGGGCATATCTTGAGTGTATGAGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCAGCAGCCCTGTGAGGATGGGCATATCTTGAGTGTATGAGATAG  750

seq1  GTCTAGACGAGTGCCACTGGACCTGGGTAACAGTAGAAAATGTGGCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGACGAGTGCCACTGGACCTGGGTAACAGTAGAAAATGTGGCTTCC  800

seq1  GAAAAGCAAATGAGCTAATAATCCACTGTCTAAGTCAGGGTTTCTATTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAAATGAGCTAATAATCCACTGTCTAAGTCAGGGTTTCTATTCC  850

seq1  TCCACAAAACATCATGACCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAACATCATGACCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTA  900

seq1  CAGTTCCACATTGCTGTTCATCACCAAAGGAAGTCAGGACTGGGACTCAC  950
      ||||| ||||||||||||||||||| ||||||||||||||||||| ||||
seq2  CAGTT-CACATTGCTGTTCATCACCCAAGGAAGTCAGGACTGGGATTCAC  949

seq1  ACAGGGCA  958
      ||||||||
seq2  ACAGGGCA  957

seq1: chr14_68948292_68948432
seq2: B6Ng01-164O06.g_105_245 (reverse)

seq1  AGCCGGGCGTGGTGGCGCATGTCTTTAATCCCAGCACTCGGGAGGCAGAG  50
      |||| ||||||||||||||   ||||||||||||||||| ||||||||||
seq2  AGCCAGGCGTGGTGGCGCACACCTTTAATCCCAGCACTCAGGAGGCAGAG  50

seq1  GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCC  100
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATTTCTGAATTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCC  100

seq1  AGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAA  141
      ||||||||||| || || |||||||||||||||| ||||||
seq2  AGGACAGCCAGAGCCATTCAGAGAAACCCTGTCTTGAAAAA  141