BAC Information

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BAC

Clone NameB6Ng01-165E21
Chromosome14 (Build37)
Map Location 109,581,664 - 109,618,798
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165E21.bB6Ng01-165E21.g
ACCDH957399DH957400
length1,1441,151
definitionDH957399|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E21, 5' end.DH957400|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,617,648 - 109,618,798)(109,581,664 - 109,582,834)
sequence
gaattcttggatttttaaaaatttctacagagtattttattatttccatt
taaaataaaatggttaccagataggaagctctttgttaattattctgaat
ttagcatgatctatccactagttcaggtcaattgcaagtgatcttcaatt
aaagcaaataactgtagtatataggataaatccccatatcagccgtccta
atagaacatggttctctagaattgtctgctagtgacatggtcaaatcaaa
ttaattttctggaatgaaatgttcactgacaacatgaggtatgaaatatc
tgaagtgttcctgaatgactcaggagctatatttagagtattatttattt
ttaaattatctaaatcaaataattacatgtcactagaagacagtcttttg
gacaaagcagataagagtattttattactctgtgctgtcttaatcaatct
caaattgtcaggatcaactgcagaattgaataaaatgtatagaactcact
gttgatctgtgatggatattgggtataagaaagataaaaggtggttgcat
taaaattactttgttgcaaaaatagtaaattctgcctaaacaatgaatca
gaagaatcccaaataaaaataatagattcaaaattttatatgtatatgca
tgtcatgtctacacaatgatatatatttatatgtatacttcacaaatctc
atatagacatgtacatatatcttgatacagttgtttgtaatttgcaaaat
atatcctcaataaattatgaaactagaaatttaaatactttgatataaaa
atcataagaactaagaaatagggctaaagtagataccagcaaatgaagtg
atgtataaattttgatcctccacaatttttgtaaaggaaggagtaatttg
taatctaatcccaaactagggagacagaaatcagctgatccatgggactg
ctgagcccatgcattgatcttcaattaaaagcaaaaactggtagtatata
ggataaattccccataatcagctgtcctatagaacatgggtctcctagaa
tgtctggctagtggatatggtcaaatcaaatagttcccttctgatgacat
tccaggccattgaaaggatagggtcgaaaatagtgagtcaacta
gaattctgagcttttggactaatattgacttatcagtgagtaaatgccat
gtgtgtttttttgtgtctgggttaccacactcaggatgatattttttagt
tctatccatcttccagtaaattttatacagtcgttgttttagtagtactc
ctttgtgtaaatgtaccatggttttttgtttgtttgtttgtttttgtttt
tgtttgttttttgtttttttgtaaccatttttctgttgagagacatctgg
attattcccagcttctatctattataaataagctgctataaacctagtgg
agcatatgcctttgttaaacgttggaatatccttggtatatttccggtaa
tgctatatcttggtattcaggtagaactatttccagttttctgaagaacc
tcccgattgtttctcttatttttctatttgttttcttaagtttagatata
gtccctctcctattcttgttatattagatataattttgttaacctataat
aacagtaataagagtaaaaaatcacagacacagatctttgcttcaacagt
tagtaaattcctactatatgctaactgcttttcctacatatttctttcaa
ttaaaagaaaaatatgattttcacagtgccctttttttttcaattaggaa
gccttttacttgaattattccaaaagatgtaatatagtacatattaacca
ataaaacttattttttattctttcttaatcaactatgtacatcttcaaat
ggtcactctgcatcattgttgttgtaaatagttactggtcacaaatagat
aaagagcttaatgtcatgtttttcagtaatgtggtctgtaaattaccatg
tgtttattgcggactttgtacaaaggaaagcttaaaattattattttata
gtggaccattttaaaggataaatgaaaataacttgactcgagagagcagt
gagaaactcactaggaaggacattgtctcaattctttggggtgatgctat
tttatttattgatagaagccactgtaagacactttatgaaagttccgtca
gatactggaaaataagacaccacctggaaccaaatttaaatataagatac
ctagtatccaaatttaatgagggcctgggaggaaaatttgtgggggtgct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109617648_109618798
seq2: B6Ng01-165E21.b_44_1187 (reverse)

seq1  TAGTTGACTTCAACTATTTTTTGATACCTTAT-CTTTCAATGG-CTTGAA  48
      |||||||||   ||||||||     ||| ||| |||||||||| || |||
seq2  TAGTTGACT--CACTATTTT---CGACCCTATCCTTTCAATGGCCTGGAA  45

seq1  TGTCATCATGAAGGGTAACTAATTTGATTTGACCATAT-CACTAG-CAGA  96
      |||||||| |||||| |||| ||||||||||||||||| |||||| ||||
seq2  TGTCATCA-GAAGGG-AACT-ATTTGATTTGACCATATCCACTAGCCAGA  92

seq1  CAATTCTA-GAGAACCATGTTCTATTAGGACAGCTGA-TATGGGG-ATTT  143
      | |||||| |||| |||||||||| |||||||||||| ||||||| ||||
seq2  C-ATTCTAGGAGACCCATGTTCTA-TAGGACAGCTGATTATGGGGAATTT  140

seq1  ATCCTATATACTA-CAGTTATTTGCTTTTAATTGAAGATCAATTGCATGG  192
      ||||||||||||| ||||| |||||||||||||||||||||| |||||||
seq2  ATCCTATATACTACCAGTT-TTTGCTTTTAATTGAAGATCAA-TGCATGG  188

seq1  GCTCAGCAGTCCCATGGATCAGCTGATTTTCTGTCTCCCTAGTTTTGGGA  242
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  GCTCAGCAGTCCCATGGATCAGCTGA-TTTCTGTCTCCCTAG-TTTGGGA  236

seq1  TTAGATTACAAATTACTCCTTTCCTTTACAAAAATTGTGGAGGATCAAAA  292
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAGATTACAAATTACTCC-TTCCTTTACAAAAATTGTGGAGGATCAAAA  285

seq1  TTTATACATCACTTCATTTGCTGGTATCTACTTTAGCCCTATTTCTTAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACATCACTTCATTTGCTGGTATCTACTTTAGCCCTATTTCTTAGT  335

seq1  TCTTATGATTTTTATATCAAAGTATTTAAATTTCTAGTTTCATAATTTAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGATTTTTATATCAAAGTATTTAAATTTCTAGTTTCATAATTTAT  385

seq1  TGAGGATATATTTTGCAAATTACAAACAACTGTATCAAGATATATGTACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATATATTTTGCAAATTACAAACAACTGTATCAAGATATATGTACA  435

seq1  TGTCTATATGAGATTTGTGAAGTATACATATAAATATATATCATTGTGTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATATGAGATTTGTGAAGTATACATATAAATATATATCATTGTGTA  485

seq1  GACATGACATGCATATACATATAAAATTTTGAATCTATTATTTTTATTTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGACATGCATATACATATAAAATTTTGAATCTATTATTTTTATTTG  535

seq1  GGATTCTTCTGATTCATTGTTTAGGCAGAATTTACTATTTTTGCAACAAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTCTGATTCATTGTTTAGGCAGAATTTACTATTTTTGCAACAAA  585

seq1  GTAATTTTAATGCAACCACCTTTTATCTTTCTTATACCCAATATCCATCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTAATGCAACCACCTTTTATCTTTCTTATACCCAATATCCATCA  635

seq1  CAGATCAACAGTGAGTTCTATACATTTTATTCAATTCTGCAGTTGATCCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAACAGTGAGTTCTATACATTTTATTCAATTCTGCAGTTGATCCT  685

seq1  GACAATTTGAGATTGATTAAGACAGCACAGAGTAATAAAATACTCTTATC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTGAGATTGATTAAGACAGCACAGAGTAATAAAATACTCTTATC  735

seq1  TGCTTTGTCCAAAAGACTGTCTTCTAGTGACATGTAATTATTTGATTTAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTCCAAAAGACTGTCTTCTAGTGACATGTAATTATTTGATTTAG  785

seq1  ATAATTTAAAAATAAATAATACTCTAAATATAGCTCCTGAGTCATTCAGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAAAAATAAATAATACTCTAAATATAGCTCCTGAGTCATTCAGG  835

seq1  AACACTTCAGATATTTCATACCTCATGTTGTCAGTGAACATTTCATTCCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTCAGATATTTCATACCTCATGTTGTCAGTGAACATTTCATTCCA  885

seq1  GAAAATTAATTTGATTTGACCATGTCACTAGCAGACAATTCTAGAGAACC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAATTTGATTTGACCATGTCACTAGCAGACAATTCTAGAGAACC  935

seq1  ATGTTCTATTAGGACGGCTGATATGGGGATTTATCCTATATACTACAGTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTATTAGGACGGCTGATATGGGGATTTATCCTATATACTACAGTT  985

seq1  ATTTGCTTTAATTGAAGATCACTTGCAATTGACCTGAACTAGTGGATAGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTTAATTGAAGATCACTTGCAATTGACCTGAACTAGTGGATAGA  1035

seq1  TCATGCTAAATTCAGAATAATTAACAAAGAGCTTCCTATCTGGTAACCAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTAAATTCAGAATAATTAACAAAGAGCTTCCTATCTGGTAACCAT  1085

seq1  TTTATTTTAAATGGAAATAATAAAATACTCTGTAGAAATTTTTAAAAATC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAAATGGAAATAATAAAATACTCTGTAGAAATTTTTAAAAATC  1135

seq1  CAAGAATTC  1151
      |||||||||
seq2  CAAGAATTC  1144

seq1: chr14_109581664_109582834
seq2: B6Ng01-165E21.g_67_1217

seq1  GAATTCTGAGCTTTTGGACTAATATTGACTTATCAGTGAGTAAATGCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCTTTTGGACTAATATTGACTTATCAGTGAGTAAATGCCAT  50

seq1  GTGTGTTTTTTTGTGTCTGGGTTACCACACTCAGGATGATATTTTTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTTTTGTGTCTGGGTTACCACACTCAGGATGATATTTTTTAGT  100

seq1  TCTATCCATCTTCCAGTAAATTTTATACAGTCGTTGTTTTAGTAGTACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCATCTTCCAGTAAATTTTATACAGTCGTTGTTTTAGTAGTACTC  150

seq1  CTTTGTGTAAATGTACCATGGTTTTTTGTTTGTTTGTTTGTTTTTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTAAATGTACCATGGTTTTTTGTTTGTTTGTTTGTTTTTGTTTT  200

seq1  TGTTTGTTTTTTGTTTTTTTGTAACCATTTTTCTGTTGAGAGACATCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTTGTTTTTTTGTAACCATTTTTCTGTTGAGAGACATCTGG  250

seq1  ATTATTCCCAGCTTCTATCTATTATAAATAAGCTGCTATAAACCTAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCCAGCTTCTATCTATTATAAATAAGCTGCTATAAACCTAGTGG  300

seq1  AGCATATGCCTTTGTTAAACGTTGGAATATCCTTGGTATATTTCCGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATGCCTTTGTTAAACGTTGGAATATCCTTGGTATATTTCCGGTAA  350

seq1  TGCTATATCTTGGTATTCAGGTAGAACTATTTCCAGTTTTCTGAAGAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATCTTGGTATTCAGGTAGAACTATTTCCAGTTTTCTGAAGAACC  400

seq1  TCCCGATTGTTTCTCTTATTTTTCTATTTGTTTTCTTAAGTTTAGATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGATTGTTTCTCTTATTTTTCTATTTGTTTTCTTAAGTTTAGATATA  450

seq1  GTCCCTCTCCTATTCTTGTTATATTAGATATAATTTTGTTAACCTATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTCCTATTCTTGTTATATTAGATATAATTTTGTTAACCTATAAT  500

seq1  AACAGTAATAAGAGTAAAAAATCACAGACACAGATCTTTGCTTCAACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAATAAGAGTAAAAAATCACAGACACAGATCTTTGCTTCAACAGT  550

seq1  TAGTAAATTCCTACTATATGCTAACTGCTTTTCCTACATATTTCTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATTCCTACTATATGCTAACTGCTTTTCCTACATATTTCTTTCAA  600

seq1  TTAAAAGAAAAATATGATTTTCACAGTGCCCTTTTTTTTTCAATTAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAAAAATATGATTTTCACAGTGCCCTTTTTTTTTCAATTAGGAA  650

seq1  GCCTTTTACTTGAATTATTCCAAAAGATGTAATATAGTACATATTAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTACTTGAATTATTCCAAAAGATGTAATATAGTACATATTAACCA  700

seq1  ATAAAACTTA-TTTTTATTCTTTCTTAATCAACTATGTACATCTTCAAAT  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTTATTTTTTATTCTTTCTTAATCAACTATGTACATCTTCAAAT  750

seq1  GGTCACTCTGCATCATTGTTGTTGTAAATAGTTACTGGTCACAAATAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTCTGCATCATTGTTGTTGTAAATAGTTACTGGTCACAAATAGAT  800

seq1  AAAGAGCTTAATGTCATGTTTTTCAGTAATGTGGTCTGTAAATTACCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTTAATGTCATGTTTTTCAGTAATGTGGTCTGTAAATTACCATG  850

seq1  TGTTTATTGCGGACTTTGTACAAAGGAAAGCTTAAAATTACTTATTTTAT  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTTTATTGCGGACTTTGTACAAAGGAAAGCTTAAAATTA-TTATTTTAT  899

seq1  AGTGGACCATTTTAAAGGATAAATGAAAATAACTTTGACTCGAGAGAAGC  949
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  AGTGGACCATTTTAAAGGATAAATGAAAATAAC-TTGACTCGAGAG-AGC  947

seq1  AGTGAGATACTCACTTAGGAAGGACAATTTGTCTCAATTCTTT-GGGTGA  998
      ||||||| |||||| |||||||||||  ||||||||||||||| ||||||
seq2  AGTGAGAAACTCAC-TAGGAAGGACA--TTGTCTCAATTCTTTGGGGTGA  994

seq1  TGCTTATATTATTTATATTGAATAGAAG-CACTGTAAAGACAACTTTATG  1047
      ||| ||| |||||  ||||| ||||||| |||||| ||||| ||||||||
seq2  TGC-TATTTTATT--TATTG-ATAGAAGCCACTGT-AAGAC-ACTTTATG  1038

seq1  AAAAGTTCAGTCATAGATACTGAAAAATAAAGACAACAACTGAGACCATA  1097
       ||||||| |||  |||||||| ||||| |||||| || |||  |||| |
seq2  -AAAGTTCCGTC--AGATACTGGAAAAT-AAGACACCACCTGGAACCA-A  1083

seq1  ATTTTAAAAATAATAAGATACGTAGTTATCTAAAATTTAATGAGGCCATG  1147
      ||||   |||| ||||||||| ||| ||||  ||||||||||||| | ||
seq2  ATTT---AAAT-ATAAGATACCTAG-TATC-CAAATTTAATGAGGGCCTG  1127

seq1  GATGGAAAATTTTGGGGGTTGCTT  1171
      |  |||||||||  |||| |||||
seq2  GGAGGAAAATTTGTGGGGGTGCTT  1151