BAC Information

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BAC

Clone NameB6Ng01-166H17
Chromosome14 (Build37)
Map Location 97,394,861 - 97,531,538
singlet/doubletdoublet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166H17.bB6Ng01-166H17.g
ACCDH958250DH958251
length1,1581,148
definitionDH958250|Mus musculus domesticus DNA, BAC clone: B6Ng01-166H17, 5' end.DH958251|Mus musculus domesticus DNA, BAC clone: B6Ng01-166H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,394,861 - 97,396,021)(97,530,378 - 97,531,538)
sequence
gaattccataatggaaaggggaaaaaaaaagaggagcagtaatgtaaaac
cattatcccaaatcagtaattttaggatttcaaatcaggccttatgttaa
taatttacacttgggccagcccaggtacagcaaagcattagtcaaatgca
aactgctttaggagtgactgcttcagcatacttatgcacatgagtcaggc
tgaaaaaaaaaacataccttaataccttgctatcctttcctcagatgaaa
caacaattcttttaataacatttaaagttttcctttgaagacaaattgta
gccaaataaaaaacatttccttagtgaacactgtcagttaaatttctcag
cattcttcaaattgtgcatcctttaataataacttacatcacaataaact
gttttctcttacacagagtaagaaaaaacgctcagttgacgttaggtgtg
ttcagtacagtatggcaaaagttaataaaaaactttgaataaacaaatgc
cactttcctactatatgaggaggaatattgatatcagttcatctcgtcaa
ggactccaaagttggcttactgaaaaatgagagatttttagagtgagacc
ttccaccctgcatatcctataggacaatattcattgaaatgtgcatatat
gagtatagctgatgacctctgtgaagtgtctaacaaaatatatagtagat
tattaattatcctttagtacctgtgatggtttgtatattcttggcccagg
gagtggcaccatttggaggtgtggccttgttggaataggtgtgtcactgt
gggtgtgggcttaagatcctcaccctagttgcttggaagtcagtcttcca
ctagcagcatttggatgaagatgtagaattcgcagctctgcctgtgccat
gcctgaatggatactgccatgctcccaccttgatgatatggacttaaccc
ctgaacctgtaagccagccccaattaaatattgttttttatagacttgcc
ttggtcatggtttctgtcacagtaataaaaccctactaagaacagaagtt
ggtactgggagttgggtggttgctgtgataggcctgacatgcttttattt
gaaagaatgtgtgaattgggaaagaagacatggaatgcttgaatgggctt
atgggtca
gaattccagaacagccaggcagcaaaggctctgttacacagagaaactct
gtccaaaacaaaaaacaaaaaacaaaaaaacaaaaaacaaacaaacaaaa
aacacccaagaaaaacaaaaacctaagacaagtaaaattacaaagaagac
atcatgatattttcaggtaagtggatggaaatagaatacaataatcctga
gtgagattccacagacccagaagacaaatacaagaaggcaagatagacag
acaaacacacacacagaattgaaatcaacacattctttttttttaaatat
tagataaaagtgtaaagcttctttgcaaaacttgatttatccctttcatt
ctaggcttctgtcatctgtgctcctctagaagagagttaagttttatcac
acacttatccattttgtttatgctattcaagtatgcttgaattttatatc
tgacaggtgaccagtaaattaattagatggtactaacttatggtaggcat
tttttatatatatatttgatgaaaaatggatgctatgtatcagacggtta
caacctcttatcaatatctgtgccacgaatccttaatttataggaaggaa
cttagcagcagtgtatacctgagttaaggatctggggatgggatggtgag
ccttagctatcaaagcaatctcagtgtacttacagtggcgcttctacaag
aaagacaagaagatcaaagaactatccgccacaaagtataaacagcagtg
ggaatgatgccctttgaagatgcatgaaagatctctgagcaatactgtaa
ggtaagcatcttcagtgttccacacttgtgttctctgtattggtaagtcg
tgggactacacagacttagtagcagaagctatatttatcaatatccattg
ccaaatatagtcccaaatattctatgcagttaaaaaatatatcagtcaaa
actgattacttagttcgttctgggaaaacaacaacaaacaataaacaaac
aactgcttgtagagacactctatggagtaattatttgcaggagtttgcta
cagaaaaaaaaggacaataattgtaaataagtgcatgcttgtagtcccca
ctattaaatgttctgaattatttaccattttctgctgttgtgaatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_97394861_97396021
seq2: B6Ng01-166H17.b_43_1200

seq1  GAATTCCATAATGGAAAGGGGAAAAAAAAAGAGGAGCAGTAATGTAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATGGAAAGGGGAAAAAAAAAGAGGAGCAGTAATGTAAAAC  50

seq1  CATTATCCCAAATCAGTAATTTTAGGATTTCAAATCAGGCCTTATGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCCCAAATCAGTAATTTTAGGATTTCAAATCAGGCCTTATGTTAA  100

seq1  TAATTTACACTTGGGCCAGCCCAGGTACAGCAAAGCATTAGTCAAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACACTTGGGCCAGCCCAGGTACAGCAAAGCATTAGTCAAATGCA  150

seq1  AACTGCTTTAGGAGTGACTGCTTCAGCATACTTATGCACATGAGTCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTTAGGAGTGACTGCTTCAGCATACTTATGCACATGAGTCAGGC  200

seq1  TGAAAAAAAAAACATACCTTAATACCTTGCTATCCTTTCCTCAGATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAAACATACCTTAATACCTTGCTATCCTTTCCTCAGATGAAA  250

seq1  CAACAATTCTTTTAATAACATTTAAAGTTTTCCTTTGAAGACAAATTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTCTTTTAATAACATTTAAAGTTTTCCTTTGAAGACAAATTGTA  300

seq1  GCCAAATAAAAAACATTTCCTTAGTGAACACTGTCAGTTAAATTTCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATAAAAAACATTTCCTTAGTGAACACTGTCAGTTAAATTTCTCAG  350

seq1  CATTCTTCAAATTGTGCATCCTTTAATAATAACTTACATCACAATAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCAAATTGTGCATCCTTTAATAATAACTTACATCACAATAAACT  400

seq1  GTTTTCTCTTACACAGAGTAAGAAAAAACGCTCAGTTGACGTTAGGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTTACACAGAGTAAGAAAAAACGCTCAGTTGACGTTAGGTGTG  450

seq1  TTCAGTACAGTATGGCAAAAGTTAATAAAAAACTTTGAATAAACAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTACAGTATGGCAAAAGTTAATAAAAAACTTTGAATAAACAAATGC  500

seq1  CACTTTCCTACTATATGAGGAGGAATATTGATATCAGTTCATCTCGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCTACTATATGAGGAGGAATATTGATATCAGTTCATCTCGTCAA  550

seq1  GGACTCCAAAGTTGGCTTACTGAAAAATGAGAGATTTTTAGAGTGAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCAAAGTTGGCTTACTGAAAAATGAGAGATTTTTAGAGTGAGACC  600

seq1  TTCCACCCTGCATATCCTATAGGACAATATTCATTGAAATGTGCATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCCTGCATATCCTATAGGACAATATTCATTGAAATGTGCATATAT  650

seq1  GAGTATAGCTGATGACCTCTGTGAAGTGTCTAACAAAATATATAGTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAGCTGATGACCTCTGTGAAGTGTCTAACAAAATATATAGTAGAT  700

seq1  TATTAATTATCCTTTAGTACCTGTGATGGTTTGTATATTCTTGGCCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTATCCTTTAGTACCTGTGATGGTTTGTATATTCTTGGCCCAGG  750

seq1  GAGTGGCACCATTTGGAGGTGTGGCCTTGTTGGAATAGGTGTGTCACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCACCATTTGGAGGTGTGGCCTTGTTGGAATAGGTGTGTCACTGT  800

seq1  GGGTGTGGGCTTAAGATCCTCACCCTAGTTGCTTGGAAGTCAGTCTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGGCTTAAGATCCTCACCCTAGTTGCTTGGAAGTCAGTCTTCCA  850

seq1  CTAGCAGCATTTGGATGAAGATGTAGAATTCGCAGCTCTGCCTGTGCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGCATTTGGATGAAGATGTAGAATTCGCAGCTCTGCCTGTGCCAT  900

seq1  GCCTGAATGGATACTGCCATGCTCCCACCTTGATGATAATGGACTTAACC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCTGAATGGATACTGCCATGCTCCCACCTTGATGAT-ATGGACTTAACC  949

seq1  CCTGAACCTGTAAGCCAGCCCCAATTAAATATTGTTTTTATAAGACTTGC  1000
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  CCTGAACCTGTAAGCCAGCCCCAATTAAATATTGTTTTTTATAGACTTGC  999

seq1  CTTGGTCATGGTTTCTGTTCACAGTAATAAAACCCTAACTAAG-ACAGAA  1049
      ||||||||||||||||| |||||||||||||||||| |||||| ||||||
seq2  CTTGGTCATGGTTTCTG-TCACAGTAATAAAACCCT-ACTAAGAACAGAA  1047

seq1  GTTGGTACTGGGAGTTGGGT-GTTGCTGTGATAGGCCTGACCATGCTTTT  1098
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GTTGGTACTGGGAGTTGGGTGGTTGCTGTGATAGGCCTGA-CATGCTTTT  1096

seq1  ATTTGAAAGAA--TGTGGATTTGGAAAGAAGCAGTGGAATGCTTTGAATG  1146
      |||||||||||  |||| ||| |||||||||   |||||||| |||||| 
seq2  ATTTGAAAGAATGTGTGAATTGGGAAAGAAGACATGGAATGC-TTGAAT-  1144

seq1  GGGCTTAATGGGTCA  1161
      |||||| ||||||||
seq2  GGGCTT-ATGGGTCA  1158

seq1: chr14_97530378_97531538
seq2: B6Ng01-166H17.g_64_1211 (reverse)

seq1  CTGATTCACAAACAGCAGAAACATCGTAAATAAATTCAGAACATTTAAAT  50
      ||||||||| ||||||||||| || |||||| |||||||||||||| |||
seq2  CTGATTCAC-AACAGCAGAAA-ATGGTAAAT-AATTCAGAACATTT-AAT  46

seq1  AGTGTGGACTACCAAAGCATGCACTTA-TTAC-ATTATTGTCTTTTTTTT  98
      |||| |||||||  ||||||||||||| |||| ||||||||| |||||||
seq2  AGTGGGGACTAC--AAGCATGCACTTATTTACAATTATTGTCCTTTTTTT  94

seq1  TCTGTTAGCAAAACTCCTGCAAATAATTACTTCCATAGAGTGTCTCTACA  148
      |||| |||| |||||||||||||||||||| |||||||||||||||||||
seq2  TCTG-TAGC-AAACTCCTGCAAATAATTAC-TCCATAGAGTGTCTCTACA  141

seq1  AGCAGTTTGTTTGTTTATTTGTTTGTTTGTTTGTTTTCCCAGAACGAACT  198
      ||||| ||||||||||| |||||||||   ||||||||||||||||||||
seq2  AGCAG-TTGTTTGTTTA-TTGTTTGTT--GTTGTTTTCCCAGAACGAACT  187

seq1  AAGTAATCAGTTTTTGACTGATATATTTTTTTAACTGCATAGAATATTTG  248
      |||||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  AAGTAATCAG-TTTTGACTGATATA-TTTTTTAACTGCATAGAATATTTG  235

seq1  GGACTATATTTGGCAATGGATATTGATAAATATAGCTTCTGCTACTAAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATATTTGGCAATGGATATTGATAAATATAGCTTCTGCTACTAAGT  285

seq1  CTGTGTAGTCCCACGACTTACCAATACAGAGAACACAAGTGTGGAACACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGTCCCACGACTTACCAATACAGAGAACACAAGTGTGGAACACT  335

seq1  GAAGATGCTTACCTTACAGTATTGCTCAGAGATCTTTCATGCATCTTCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCTTACCTTACAGTATTGCTCAGAGATCTTTCATGCATCTTCAA  385

seq1  AGGGCATCATTCCCACTGCTGTTTATACTTTGTGGCGGATAGTTCTTTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCATTCCCACTGCTGTTTATACTTTGTGGCGGATAGTTCTTTGA  435

seq1  TCTTCTTGTCTTTCTTGTAGAAGCGCCACTGTAAGTACACTGAGATTGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGTCTTTCTTGTAGAAGCGCCACTGTAAGTACACTGAGATTGCT  485

seq1  TTGATAGCTAAGGCTCACCATCCCATCCCCAGATCCTTAACTCAGGTATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGCTAAGGCTCACCATCCCATCCCCAGATCCTTAACTCAGGTATA  535

seq1  CACTGCTGCTAAGTTCCTTCCTATAAATTAAGGATTCGTGGCACAGATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTGCTAAGTTCCTTCCTATAAATTAAGGATTCGTGGCACAGATAT  585

seq1  TGATAAGAGGTTGTAACCGTCTGATACATAGCATCCATTTTTCATCAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGAGGTTGTAACCGTCTGATACATAGCATCCATTTTTCATCAAAT  635

seq1  ATATATATAAAAAATGCCTACCATAAGTTAGTACCATCTAATTAATTTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAAAAAATGCCTACCATAAGTTAGTACCATCTAATTAATTTAC  685

seq1  TGGTCACCTGTCAGATATAAAATTCAAGCATACTTGAATAGCATAAACAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACCTGTCAGATATAAAATTCAAGCATACTTGAATAGCATAAACAA  735

seq1  AATGGATAAGTGTGTGATAAAACTTAACTCTCTTCTAGAGGAGCACAGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAAGTGTGTGATAAAACTTAACTCTCTTCTAGAGGAGCACAGAT  785

seq1  GACAGAAGCCTAGAATGAAAGGGATAAATCAAGTTTTGCAAAGAAGCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGCCTAGAATGAAAGGGATAAATCAAGTTTTGCAAAGAAGCTTT  835

seq1  ACACTTTTATCTAATATTTAAAAAAAAAGAATGTGTTGATTTCAATTCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTATCTAATATTTAAAAAAAAAGAATGTGTTGATTTCAATTCTG  885

seq1  TGTGTGTGTTTGTCTGTCTATCTTGCCTTCTTGTATTTGTCTTCTGGGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTTTGTCTGTCTATCTTGCCTTCTTGTATTTGTCTTCTGGGTC  935

seq1  TGTGGAATCTCACTCAGGATTATTGTATTCTATTTCCATCCACTTACCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATCTCACTCAGGATTATTGTATTCTATTTCCATCCACTTACCTG  985

seq1  AAAATATCATGATGTCTTCTTTGTAATTTTACTTGTCTTAGGTTTTTGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCATGATGTCTTCTTTGTAATTTTACTTGTCTTAGGTTTTTGTT  1035

seq1  TTTCTTGGGTGTTTTTTGTTTGTTTGTTTTTTGTTTTTTTGTTTTTTGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGGTGTTTTTTGTTTGTTTGTTTTTTGTTTTTTTGTTTTTTGTT  1085

seq1  TTTTGTTTTGGACAGAGTTTCTCTGTGTAACAGAGCCTTTGCTGCCTGGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGGACAGAGTTTCTCTGTGTAACAGAGCCTTTGCTGCCTGGC  1135

seq1  TGTTCTGGAATTC  1161
      |||||||||||||
seq2  TGTTCTGGAATTC  1148