BAC Information

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BAC

Clone NameB6Ng01-166H21
Chromosome14 (Build37)
Map Location 89,380,588 - 89,381,739
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166H21.bB6Ng01-166H21.g
ACCDH958258DH958259
length1,2531,146
definitionDH958258|Mus musculus domesticus DNA, BAC clone: B6Ng01-166H21, 5' end.DH958259|Mus musculus domesticus DNA, BAC clone: B6Ng01-166H21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctgtgagccccattttttaatgggattatttgatt
ttctggagtccaccttcttgagttctatatatatatatataggatattag
tgccctatctgatttaggataggtaaagatcttttcccaatctgttggtg
gtctttttgtctaattgagagtgtcttttgccttgcaactttatgaggtc
ccatttattgattcttgaacttaccgcaaaagtcattgctattctattca
gaaatttttcccctgtacccatatcttcgaggctttccctactttcttct
ctatatgttgcagtgtctctggttttatgtggagttccttaatcctctta
gatttgaccttagtacaaggagataggaatggatcaatttgcattcttct
acatgataaccaccagttgtgccagcaccatttgttgaaaatactgtctt
ttttccactggatggttttatctgccttgtcaaagctcaagtgaccatag
gtgtgtgggttcatctctaggtcttcaattctattccattggtgtacttg
tctgtcgatataccaataccatgcagtttttatcacaattgctctgtagt
atagctttaggtcaggcatggtgattccaccagaggtttttttatcctta
agaagagtttttgctatcctcggttttttgttattccagatgaatctgtg
aagtgccctttctaattcgttgaagaattgagttggaattttgatgggga
ttgcattgaatctgtagattgcttttggcaagatagccatttttactaga
ttgatcctgccaatccataagcatggaagatctttccatcttctgagatc
ttcttaaatttctttcttcagatccttgaagttcttatcatatagatctt
tcacttcctcagaaagagtcatgccaaggtattttatattatttgtggct
attgagagagtgttgtttccctaatttctttctgtttgtcctttgtgtac
aaaaggccattgacttgtttgagttaatttttatattcagctacttcacc
gaaggctgttatcaggcttagagtctcctgttgaaattttaggtcacgat
aatatactcattctatcatcctgcgaaaggggaatttggactccttgccc
tttcaattggatacccggggactactcttggtggcaatggtctgccaaaa
ttcaagatctatgtgataaagtgacgcagaaagtgtgcggcactcccgtc
gta
gaattcatgcattttaatcacagatattaaatgggtttattagctcacat
taaggaatggggaaaggtaaatgttcatatttggtaagtttattcttcct
taaatatcttcagcaaactgcagttaaagttttatttgaagcactaataa
taatgccaaagcgaattttgaaatcttacttatttctatgattgtaaatg
cttttttaaatacctgtttataactgatgatcaaggatttcaagaatatt
tttagctgggagatgatgcacacgcctttaatcccagaaatttggaccca
gtgacaggcagatctctccgaactcaaggacatcctggtctacagagcaa
gtttcagaacattgaaggctacacggagaaattctgtctggaaaaaaaca
aataaaacaaaacaaaacaaaacaaaacaagaaagaatattttttcacca
atgatttcagtgtgtgtattttattttaaaaatatgaaattaaaaatgtt
aacttcttatgctgtttatatatataatatttctttagccctgagtttaa
aatgcccaattttaatgctttttttgtaattctgaaagcaagttgatggt
ctcattgagaaatgcacagcttctttaaaactttcaatacaatcaactat
ataatctatagatattgattgaaaatgacaaagcaatatgatgttttgat
agtagtgaaatgaaaatctgaagtctaagctgtagggttgtgtgctgagc
gggtttaaatgtggaaacatgggctggctagcgttcaaaagttcagtggg
atccttagtggagtctgttagtgagtgattgaaagtttctacatcaatgg
tgttaaaagagaaagtctgcaacatgaagcctggaatataaagtctatgt
gaatactgatataatcctacctatttaaagaagcccagtatcaacagaat
gagcataccatctatattttaaagagatccagctgtattttatgaacaat
aatagcaatttcagaacaacttttcattaagtaaaagaaaaccatcaggt
taaaaaaaaagtttaattagttccaatcctaatatttacttatctagaaa
agacattgttaagtttcaaagccatattctcatgggattttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89380588_89381739
seq2: B6Ng01-166H21.g_65_1210 (reverse)

seq1  AAAAAAAAAT-ACATGAAGTATATATAGCTTTG-AACTTAAC-ATG-CTT  46
      ||||||||||  |||||     |||| |||||| |||||||| ||| |||
seq2  AAAAAAAAATCCCATGA---GAATATGGCTTTGAAACTTAACAATGTCTT  47

seq1  TTCTAAGATAAGTTAAAATATAGGATTTGTACCTAATTTAAATTTTTTTT  96
      |||| |||||||| || || ||||| ||| | |||||| || ||||||||
seq2  TTCT-AGATAAGTAAATAT-TAGGA-TTGGAACTAATTAAACTTTTTTTT  94

seq1  TAACCTTGATGGTTTTCTTTTACTTAATGAAAAGTTGTTCTGAAATTGCT  146
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACC-TGATGGTTTTCTTTTACTTAATGAAAAGTTGTTCTGAAATTGCT  143

seq1  ATTATTGTTCATAAAATACAGGCTGGATTCTCTTTAAAATATAGATGGTA  196
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  ATTATTGTTCATAAAATACA-GCTGGA-TCTCTTTAAAATATAGATGGTA  191

seq1  TGCTCATTCTTGTTGATACTGGGCTTCTTTAAATAGGTAGGATTATATCA  246
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTC-TGTTGATACTGGGCTTCTTTAAATAGGTAGGATTATATCA  240

seq1  GTATTCACATAGACTTTATATTCCAGGCTTCATGTTGCAGACTTTCTCTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCACATAGACTTTATATTCCAGGCTTCATGTTGCAGACTTTCTCTT  290

seq1  TTAACACCATTGATGTAGAAACTTTCAATCACTCACTAACAGACTCCACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACCATTGATGTAGAAACTTTCAATCACTCACTAACAGACTCCACT  340

seq1  AAGGATCCCACTGAACTTTTGAACGCTAGCCAGCCCATGTTTCCACATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCCCACTGAACTTTTGAACGCTAGCCAGCCCATGTTTCCACATTT  390

seq1  AAACCCGCTCAGCACACAACCCTACAGCTTAGACTTCAGATTTTCATTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCGCTCAGCACACAACCCTACAGCTTAGACTTCAGATTTTCATTTC  440

seq1  ACTACTATCAAAACATCATATTGCTTTGTCATTTTCAATCAATATCTATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTATCAAAACATCATATTGCTTTGTCATTTTCAATCAATATCTATA  490

seq1  GATTATATAGTTGATTGTATTGAAAGTTTTAAAGAAGCTGTGCATTTCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATAGTTGATTGTATTGAAAGTTTTAAAGAAGCTGTGCATTTCTC  540

seq1  AATGAGACCATCAACTTGCTTTCAGAATTACAAAAAAAGCATTAAAATTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACCATCAACTTGCTTTCAGAATTACAAAAAAAGCATTAAAATTG  590

seq1  GGCATTTTAAACTCAGGGCTAAAGAAATATTATATATATAAACAGCATAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTAAACTCAGGGCTAAAGAAATATTATATATATAAACAGCATAA  640

seq1  GAAGTTAACATTTTTAATTTCATATTTTTAAAATAAAATACACACACTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAACATTTTTAATTTCATATTTTTAAAATAAAATACACACACTGA  690

seq1  AATCATTGGTGAAAAAATATTCTTTCTTGTTTTGTTTTGTTTTGTTTTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTGGTGAAAAAATATTCTTTCTTGTTTTGTTTTGTTTTGTTTTGT  740

seq1  TTTATTTGTTTTTTTCCAGACAGAATTTCTCCGTGTAGCCTTCAATGTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTTTTTTTCCAGACAGAATTTCTCCGTGTAGCCTTCAATGTTC  790

seq1  TGAAACTTGCTCTGTAGACCAGGATGTCCTTGAGTTCGGAGAGATCTGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTGCTCTGTAGACCAGGATGTCCTTGAGTTCGGAGAGATCTGCC  840

seq1  TGTCACTGGGTCCAAATTTCTGGGATTAAAGGCGTGTGCATCATCTCCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGGGTCCAAATTTCTGGGATTAAAGGCGTGTGCATCATCTCCCA  890

seq1  GCTAAAAATATTCTTGAAATCCTTGATCATCAGTTATAAACAGGTATTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAATATTCTTGAAATCCTTGATCATCAGTTATAAACAGGTATTTA  940

seq1  AAAAAGCATTTACAATCATAGAAATAAGTAAGATTTCAAAATTCGCTTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCATTTACAATCATAGAAATAAGTAAGATTTCAAAATTCGCTTTG  990

seq1  GCATTATTATTAGTGCTTCAAATAAAACTTTAACTGCAGTTTGCTGAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATTATTAGTGCTTCAAATAAAACTTTAACTGCAGTTTGCTGAAGA  1040

seq1  TATTTAAGGAAGAATAAACTTACCAAATATGAACATTTACCTTTCCCCAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGGAAGAATAAACTTACCAAATATGAACATTTACCTTTCCCCAT  1090

seq1  TCCTTAATGTGAGCTAATAAACCCATTTAATATCTGTGATTAAAATGCAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATGTGAGCTAATAAACCCATTTAATATCTGTGATTAAAATGCAT  1140

seq1  GAATTC  1152
      ||||||
seq2  GAATTC  1146