BAC Information

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BAC

Clone NameB6Ng01-167I13
Chromosome14 (Build37)
Map Location 61,745,768 - 61,919,136
singlet/doubletdoublet
Overlap geneSacs, Sgcg
Upstream geneLOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19
Downstream geneArl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253, Dleu7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167I13.bB6Ng01-167I13.g
ACCDH959000DH959001
length1,2051,073
definitionDH959000|Mus musculus domesticus DNA, BAC clone: B6Ng01-167I13, 5' end.DH959001|Mus musculus domesticus DNA, BAC clone: B6Ng01-167I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,745,768 - 61,747,012)(61,917,971 - 61,919,136)
sequence
gaattctgccaaagccccgcctactcagtagcttaaaagggaattgagta
ggttcagtattaatagctaatctttacccaccctcagggtgggtcttccc
tgctcagtgacaagcttttggaaactccctcagagagacactgaatggtg
tgtttctgaagcctgtcagttaggataaaataaggacatgcaaaattcta
gaaatacgatttcagaaataacaagcccaacaaccgtctcaatattggtg
ctgaaaaataaattgtatgtttggtgctttaagtaaaggttgtaatggag
atagatgccttgccacagacccttgtgtctgcagaggctcaaagtctctc
ctataaaatggctgaagctgcaaaatagtttggccattttcaaggtaaat
tttcaccctgtgaagggaccactcagagatacacaggttcctgggctgag
aagctccacacatccagattaattgctctctgaccccagacaacaggctc
atccctaagaagatagagtttccacctcccatggaaagggatatctgtgc
agcccacattcctgctttgacttggcctagccccctaaggaatccctgtg
ctcgctcagggatatctgcagctgccagttgttacacaacctgactgagc
ttgtgtctgatcatctgatcagttagagagcagacacagccgggcgtggt
ggtgcacgcctttaatcccagcactcgggaggcagaggcagaggcaggca
gatttctgagttcgaggccagcctggtctacagagtgagttccaggacag
ccagggctatacagagaaaccctgtctcaaacaaaacaaaaacaaaaaca
aacaaacaaaagaacagacactgtgcaggcggcacagagactcctcacac
cagaacttcagcggcttgtgttttctgctagtgcttcagtgacccctggg
agacactggagtcaactgaacacctctctctcagtcctgttgtgtgctaa
tcttatatatctgacgaagactgaatgtgctgcaaactctatgctgtgac
agagccacctcagctctcgctctgcatatgggacctctgaatcccaccac
tgagatcatcactttcttaagttgcctcgtcagtattatcggtcatagaa
aagccaatacacgtagtctgtgccgtctgcctgagaatatgataagaaga
aagga
gaattcttgctcgtgatttggagaggccaagatcaaatagcgtccaaagc
acaatgatattgaagaacacgaggcacacctctgctttcataatggtagg
tctgagctttcttttcgaggaggcaaccttcgtcattgtatggaggacat
gccacaagggcagctcaggttcttctctgagcatgccgtcattgtttatc
gtatggtggccagaaacacagagcttagcttgaagcagtgtggctctaag
cctgtcgtcatgacctgcagctgtgcaggcccatcatcaccaaatacagc
agggcacacacccttcagagcagcactgcctgctgaacaccattctgcct
acactttgaggcagatgtgtccccagatctatgtgtggcacacccccatg
ctgtggttatgtgtcactacatgtcacgtacctgacatttccatgagtct
tggatccaagctccacttttcactcttgtgccccaaggacttgacccact
gacctgtcacccaagagccagcattagcaatagttcccccccacccctct
ccagtcacatgaccccaacctaattatcatcttatgtttttaattaagcg
ttgcttttgggaacctttaatacaacaactctagataccatttctgtcat
tgatcctgccctgggccctctgatctccatgaccgctgtctatggtccaa
ctttagtatggaggagattctcagtcatcgtcgccacactctcatgctcg
cctctccttctcctcccgctcccacacacaggttacagttgtctagttgc
ctgagttcttcactattctgcttggatttcatccttttccctctttcatc
tagtagcaacttggaaatttctcgcgaattcagagattctgttttagcta
tgctctattggctctcaaatcctcagacgttcccattctttctggtatga
tgcttgcagttactgtaatggtttgtattgttaaacggaaagtaccaagt
ccccagaccagctctgacacacttgtgaggggttgtctagataagttagt
ctctgacacacctcgtgaggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_61745768_61747012
seq2: B6Ng01-167I13.b_49_1253

seq1  GAATTCTGCCAAAGCCCCGCCTACTCAGTAGCTTAAAAGGGAATTGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCAAAGCCCCGCCTACTCAGTAGCTTAAAAGGGAATTGAGTA  50

seq1  GGTTCAGTATTAATAGCTAATCTTTACCCACCCTCAGGGTGGGTCTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTATTAATAGCTAATCTTTACCCACCCTCAGGGTGGGTCTTCCC  100

seq1  TGCTCAGTGACAAGCTTTTGGAAACTCCCTCAGAGAGACACTGAATGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTGACAAGCTTTTGGAAACTCCCTCAGAGAGACACTGAATGGTG  150

seq1  TGTTTCTGAAGCCTGTCAGTTAGGATAAAATAAGGACATGCAAAATTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGAAGCCTGTCAGTTAGGATAAAATAAGGACATGCAAAATTCTA  200

seq1  GAAATACGATTTCAGAAATAACAAGCCCAACAACCGTCTCAATATTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACGATTTCAGAAATAACAAGCCCAACAACCGTCTCAATATTGGTG  250

seq1  CTGAAAAATAAATTGTATGTTTGGTGCTTTAAGTAAAGGTTGTAATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATAAATTGTATGTTTGGTGCTTTAAGTAAAGGTTGTAATGGAG  300

seq1  ATAGATGCCTTGCCACAGACCCTTGTGTCTGCAGAGGCTCAAAGTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGCCTTGCCACAGACCCTTGTGTCTGCAGAGGCTCAAAGTCTCTC  350

seq1  CTATAAAATGGCTGAAGCTGCAAAATAGTTTGGCCATTTTCAAGGTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAATGGCTGAAGCTGCAAAATAGTTTGGCCATTTTCAAGGTAAAT  400

seq1  TTTCACCCTGTGAAGGGACCACTCAGAGATACACAGGTTCCTGGGCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCCTGTGAAGGGACCACTCAGAGATACACAGGTTCCTGGGCTGAG  450

seq1  AAGCTCCACACATCCAGATTAATTGCTCTCTGACCCCAGACAACAGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCACACATCCAGATTAATTGCTCTCTGACCCCAGACAACAGGCTC  500

seq1  ATCCCTAAGAAGATAGAGTTTCCACCTCCCATGGAAAGGGATATCTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAAGAAGATAGAGTTTCCACCTCCCATGGAAAGGGATATCTGTGC  550

seq1  AGCCCACATTCCTGCTTTGACTTGGCCTAGCCCCCTAAGGAATCCCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACATTCCTGCTTTGACTTGGCCTAGCCCCCTAAGGAATCCCTGTG  600

seq1  CTCGCTCAGGGATATCTGCAGCTGCCAGTTGTTACACAACCTGACTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTCAGGGATATCTGCAGCTGCCAGTTGTTACACAACCTGACTGAGC  650

seq1  TTGTGTCTGATCATCTGATCAGTTAGAGAGCAGACACAGCCGGGCGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGATCATCTGATCAGTTAGAGAGCAGACACAGCCGGGCGTGGT  700

seq1  GGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGAGGCAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGAGGCAGGCA  750

seq1  GATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAG  800

seq1  CCAGGGCTATACAGAGAAACCCTGTCTCAAAACAAAAACAAAAAACAAAA  850
      |||||||||||||||||||||||||||| ||||||||   ||||||||||
seq2  CCAGGGCTATACAGAGAAACCCTGTCTC-AAACAAAA--CAAAAACAAAA  847

seq1  ACAAACAAACAAAAAGAACAGACACTGTGCAGGCGGCACAGAGACTCCTC  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAC-AAAAGAACAGACACTGTGCAGGCGGCACAGAGACTCCTC  896

seq1  ACACCAGAACTTCAGCGGCTTGTGTTTTCTGCTAGTTGCTTCAGGTGACC  950
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  ACACCAGAACTTCAGCGGCTTGTGTTTTCTGCTAG-TGCTTCA-GTGACC  944

seq1  CCTGGGGAGACACTGGAGTCAACTGAACACCTCTCTTCTCAGTCCTGTTG  1000
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCT-GGGAGACACTGGAGTCAACTGAACACCTCTC-TCTCAGTCCTGTTG  992

seq1  TGGTGGCTAATCTTTATTATTATCTTGACGGAGAACTGAATTGTGCTGCA  1050
      ||   ||||||| ||||   |||| ||||| || |||||| |||||||||
seq2  TG--TGCTAATC-TTAT--ATATC-TGACGAAG-ACTGAA-TGTGCTGCA  1034

seq1  AACTCCTATTGCTGTGACAGAGCCACCTCAGCCTCTCGCTTCCTGCCATA  1100
      |||| ||| |||||||||||||||||||||| ||||||||  ||| ||||
seq2  AACT-CTA-TGCTGTGACAGAGCCACCTCAG-CTCTCGCT--CTG-CATA  1078

seq1  TTGGA-CTCTGAAATCACA-CACTGAGATTCATCACTTTTCCTTTAAGTT  1148
      | ||| ||||| |||| || |||||||| ||||||||||    |||||||
seq2  TGGGACCTCTG-AATCCCACCACTGAGA-TCATCACTTT---CTTAAGTT  1123

seq1  GCCTCTGTCAGGTATTTTATCAGTCATGAGAAAAGCCAATACACTGTAAG  1198
      ||||| |||||   | ||||| ||||| |||||||||||||||| |||  
seq2  GCCTC-GTCAG---TATTATCGGTCAT-AGAAAAGCCAATACAC-GTA--  1165

seq1  TGTCTGTTGCGCTGTCTTGCTTGAGGAGTATGGATAAGAAGAAAGGA  1245
       ||||||   || ||| ||| ||| || ||| |||||||||||||||
seq2  -GTCTGT---GCCGTC-TGCCTGA-GAATAT-GATAAGAAGAAAGGA  1205

seq1: chr14_61917971_61919136
seq2: B6Ng01-167I13.g_68_1140 (reverse)

seq1  ACCCCTCACAGGTGTGTCCAGAGACTAACCTAATCTAGACAACCCCTCAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTGTGCCCAGAGGCTAACCTAATCTAGACAACCCCTCAC-AGGTGTGT  99
                                      ||||||||| ||||||||
seq2  --------------------------------ACCCCTCACGAGGTGTGT  18

seq1  CCAGAGACTAACCTAATCTAGACAACCCCTCACAGGTGTGTCCAGAGCTT  149
       |||||||||| || ||||||||||||||||||| |||||| ||||||| 
seq2  -CAGAGACTAA-CTTATCTAGACAACCCCTCACAAGTGTGT-CAGAGCT-  64

seq1  GGGGTCTTGGGGGACTTTTGGTACTTTCCGTTTAACAATACAAACCATTA  199
        |||||  ||||||  |||||||||||||||||||||||||||||||||
seq2  --GGTCT--GGGGAC--TTGGTACTTTCCGTTTAACAATACAAACCATTA  108

seq1  CAGGTAACTTGCAAGCATCATACCAGAAAGAATGGGAACGTCTGAGGATT  249
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CA-GTAAC-TGCAAGCATCATACCAGAAAGAATGGGAACGTCTGAGGATT  156

seq1  TGAGAGCCAATAGAGCATAGCTAAAACAGAATCTCTGAATTCGCGAGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCAATAGAGCATAGCTAAAACAGAATCTCTGAATTCGCGAGAAA  206

seq1  TTTCCAAGTTGCTACTAGATGAAAGAGGGAAAAGGATGAAATCCAAGCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGTTGCTACTAGATGAAAGAGGGAAAAGGATGAAATCCAAGCAG  256

seq1  AATAGTGAAGAACTCAGGCAACTAGACAACTGTAACCTGTGTGTGGGAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGAAGAACTCAGGCAACTAGACAACTGTAACCTGTGTGTGGGAGC  306

seq1  GGGAGGAGAAGGAGAGGCGAGCATGAGAGTGTGGCGACGATGACTGAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGAAGGAGAGGCGAGCATGAGAGTGTGGCGACGATGACTGAGAA  356

seq1  TCTCCTCCATACTAAAGTTGGACCATAGACAGCGGTCATGGAGATCAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCATACTAAAGTTGGACCATAGACAGCGGTCATGGAGATCAGAG  406

seq1  GGCCCAGGGCAGGATCAATGACAGAAATGGTATCTAGAGTTGTTGTATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGGGCAGGATCAATGACAGAAATGGTATCTAGAGTTGTTGTATTA  456

seq1  AAGGTTCCCAAAAGCAACGCTTAATTAAAAACATAAGATGATAATTAGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCCCAAAAGCAACGCTTAATTAAAAACATAAGATGATAATTAGGT  506

seq1  TGGGGTCATGTGACTGGAGAGGGGTGGGGGGGAACTATTGCTAATGCTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCATGTGACTGGAGAGGGGTGGGGGGGAACTATTGCTAATGCTGG  556

seq1  CTCTTGGGTGACAGGTCAGTGGGTCAAGTCCTTGGGGCACAAGAGTGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGTGACAGGTCAGTGGGTCAAGTCCTTGGGGCACAAGAGTGAAA  606

seq1  AGTGGAGCTTGGATCCAAGACTCATGGAAATGTCAGGTACGTGACATGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCTTGGATCCAAGACTCATGGAAATGTCAGGTACGTGACATGTA  656

seq1  GTGACACATAACCACAGCATGGGGGTGTGCCACACATAGATCTGGGGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACATAACCACAGCATGGGGGTGTGCCACACATAGATCTGGGGACA  706

seq1  CATCTGCCTCAAAGTGTAGGCAGAATGGTGTTCAGCAGGCAGTGCTGCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCCTCAAAGTGTAGGCAGAATGGTGTTCAGCAGGCAGTGCTGCTC  756

seq1  TGAAGGGTGTGTGCCCTGCTGTATTTGGTGATGATGGGCCTGCACAGCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTGTGTGCCCTGCTGTATTTGGTGATGATGGGCCTGCACAGCTG  806

seq1  CAGGTCATGACGACAGGCTTAGAGCCACACTGCTTCAAGCTAAGCTCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCATGACGACAGGCTTAGAGCCACACTGCTTCAAGCTAAGCTCTGT  856

seq1  GTTTCTGGCCACCATACGATAAACAATGACGGCATGCTCAGAGAAGAACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGCCACCATACGATAAACAATGACGGCATGCTCAGAGAAGAACC  906

seq1  TGAGCTGCCCTTGTGGCATGTCCTCCATACAATGACGAAGGTTGCCTCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCCCTTGTGGCATGTCCTCCATACAATGACGAAGGTTGCCTCCT  956

seq1  CGAAAAGAAAGCTCAGACCTACCATTATGAAAGCAGAGGTGTGCCTCGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAGAAAGCTCAGACCTACCATTATGAAAGCAGAGGTGTGCCTCGTG  1006

seq1  TTCTTCAATATCATTGTGCTTTGGACGCTATTTGATCTTGGCCTCTCCAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAATATCATTGTGCTTTGGACGCTATTTGATCTTGGCCTCTCCAA  1056

seq1  ATCACGAGCAAGAATTC  1166
      |||||||||||||||||
seq2  ATCACGAGCAAGAATTC  1073