BAC Information

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BAC

Clone NameB6Ng01-168B11
Chromosome14 (Build37)Y (Build37)
Map Location 38,288,808 - 38,289,9482,652,627 - 2,652,692
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneLOC382871, LOC382872, Nrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168B11.bB6Ng01-168B11.g
ACCDH959421DH959422
length1,1281,011
definitionDH959421|Mus musculus domesticus DNA, BAC clone: B6Ng01-168B11, 5' end.DH959422|Mus musculus domesticus DNA, BAC clone: B6Ng01-168B11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,288,808 - 38,289,948)(2,652,627 - 2,652,692)
sequence
gaattctcaagcttgttgggttttaggttatcctgtcaataatgaggaat
cttgctacagcttgttctgcatagttacatgcctgcctttggatcttcta
cccaagtttctgtttgcagactgaacaagaaccttaatgatagcatctgc
caaacagcacaagcttgccattcctaccacaactcatggcctttggctta
gaataaatatgcctttaaaatatgtcttctaacagagaatgtgatgaagc
tcaggatgtaatagaacatatttcctctggtgttttaaagtgtacttcac
attagtaagtttatttccaactcatcaaaacaaggatgcacatctcagag
aaagcaccatcagtgaatttacttttcagcctatgtctgtgctactcacc
aaacatgctcaccaatttcgttcttcttaggacaaattttgagacatgac
atagactgtgagtttggctctgatatcaaaatttctggctttacacctca
gctctgttgctatctagtgatctggaagggaagttaattttttcaacgtt
ggtctcaatgtcctatttagaatgggggaaagttggaacatcttttatag
gaagaagttagacattatctcaaagatgcagtcaattcagtacaggctga
acatagaggaagctctattgtgattttggcaatagtgattattactgtgg
caggaggtagaggagagataggagatccagataagtattatctcacttct
ctctctgtgtcagccactttgcttgccagaaacattactactcaacggat
agccctttctcacaatttatttccctactgcatcccagtaactgatcagc
accttgtttgctccctagtgactcaaacagtcctggttcttcttcagatt
ccatcattgagatgcttatagacaaagacagcctttcaaattccagggct
ttagtgaaaatttcaccctggacatccaaagactgccccactgaggacct
attccatattcagccaccaaatgcagacactattgatatgccagcagatt
tgcagaagactctgatgtagttgtctctggggagctatgcagtgcttgca
acacagaagtgatgctcaagtcagctat
gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattagatattagtcccc
tatctgatttaggataggtaaagatcctttccctgttgggagccgcgccc
acattcgccgttacaagatggcgctgacagctgtgttctaagtggtaaac
aaataatctgcgcatgtgccgagggtggttcttcactccatgtgctctgc
cttccccgtgacgtcaactcggccgatgggctgcagccaatcagggagtg
acacgtcctaggcgaaggagaattctctttaatagggacggggtttcgtt
ttctctctctcttgcttctcgctcgctcttgcttcttgcactctggctcc
tgaagatgtaagcaataaagttttgccgcagaagattctggtctgtggtg
ttcttcctggccggtcgtgagaacgcgtctaataacaattggtgccgaat
tccgggacgagaaaaaactcgggactggtgcaaggaagatccctcattcc
agaaccagaactgcgggtcgcggtaataaaggttcccgtaaagcagactg
ttaagaaggattcaactgtatgaattcagaacttttcagctggggaacga
gagtaccagtgagtacagctttacgaggtaagtctgatcttgaactttct
aaggaaattcaagacagtctatcagaagtaaagtggaatatgtttggcct
tgaattttttctggtgttaggagcccttttgttccttttcacatgttatc
aagtggttaagatagggaggattctagatgaaattcaggacaagctatca
gaagtaagcggggagagagagtaggagcaaagagaaaatatggtacacaa
aaataagtatacaggcctttcaagggtcttgaacccgaggaaaagttaag
gttaggtaggaatacctggagaggagattagaagaaaaagaggaaaaagg
aaaagaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_38288808_38289948
seq2: B6Ng01-168B11.b_44_1171

seq1  GAATTCTCAAGCTTGTTGGGTTTTAGGTTATCCTGTCAATAATGAGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGCTTGTTGGGTTTTAGGTTATCCTGTCAATAATGAGGAAT  50

seq1  CTTGCTACAGCTTGTTCTGCATAGTTACATGCCTGCCTTTGGATCTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTACAGCTTGTTCTGCATAGTTACATGCCTGCCTTTGGATCTTCTA  100

seq1  CCCAAGTTTCTGTTTGCAGACTGAACAAGAACCTTAATGATAGCATCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTTCTGTTTGCAGACTGAACAAGAACCTTAATGATAGCATCTGC  150

seq1  CAAACAGCACAAGCTTGCCATTCCTACCACAACTCATGGCCTTTGGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCACAAGCTTGCCATTCCTACCACAACTCATGGCCTTTGGCTTA  200

seq1  GAATAAATATGCCTTTAAAATATGTCTTCTAACAGAGAATGTGATGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATATGCCTTTAAAATATGTCTTCTAACAGAGAATGTGATGAAGC  250

seq1  TCAGGATGTAATAGAACATATTTCCTCTGGTGTTTTAAAGTGTACTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGTAATAGAACATATTTCCTCTGGTGTTTTAAAGTGTACTTCAC  300

seq1  ATTAGTAAGTTTATTTCCAACTCATCAAAACAAGGATGCACATCTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAAGTTTATTTCCAACTCATCAAAACAAGGATGCACATCTCAGAG  350

seq1  AAAGCACCATCAGTGAATTTACTTTTCAGCCTATGTCTGTGCTACTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCATCAGTGAATTTACTTTTCAGCCTATGTCTGTGCTACTCACC  400

seq1  AAACATGCTCACCAATTTCGTTCTTCTTAGGACAAATTTTGAGACATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCTCACCAATTTCGTTCTTCTTAGGACAAATTTTGAGACATGAC  450

seq1  ATAGACTGTGAGTTTGGCTCTGATATCAAAATTTCTGGCTTTACACCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTGTGAGTTTGGCTCTGATATCAAAATTTCTGGCTTTACACCTCA  500

seq1  GCTCTGTTGCTATCTAGTGATCTGGAAGGGAAGTTAATTTTTTCAACGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTGCTATCTAGTGATCTGGAAGGGAAGTTAATTTTTTCAACGTT  550

seq1  GGTCTCAATGTCCTATTTAGAATGGGGGAAAGTTGGAACATCTTTTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAATGTCCTATTTAGAATGGGGGAAAGTTGGAACATCTTTTATAG  600

seq1  GAAGAAGTTAGACATTATCTCAAAGATGCAGTCAATTCAGTACAGGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTTAGACATTATCTCAAAGATGCAGTCAATTCAGTACAGGCTGA  650

seq1  ACATAGAGGAAGCTCTATTGTGATTTTGGCAATAGTGATTATTACTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGGAAGCTCTATTGTGATTTTGGCAATAGTGATTATTACTGTGG  700

seq1  CAGGAGGTAGAGGAGAGATAGGAGATCCAGATAAGTATTATCTCACTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTAGAGGAGAGATAGGAGATCCAGATAAGTATTATCTCACTTCT  750

seq1  CTCTCTGTGTCAGCCACTTTGCTTGCCAGAAACATTACTACTCAACGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGTCAGCCACTTTGCTTGCCAGAAACATTACTACTCAACGGAT  800

seq1  AGCCCTTTCTCACAATTTATTTCCCTACTGCATCCCAGTAACTGATCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTCTCACAATTTATTTCCCTACTGCATCCCAGTAACTGATCAGC  850

seq1  ACCTTGTTTGCTCCCTAGTGACTCAAACAGTCCTGGTTCTTCTTCAGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTTGCTCCCTAGTGACTCAAACAGTCCTGGTTCTTCTTCAGATT  900

seq1  CCATCATTGAGATGCTTATAGACAAAGACAGCCTTTCAAATTCCAGGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTGAGATGCTTATAGACAAAGACAGCCTTTCAAATTCCAGGGCT  950

seq1  TTAGTGAAAATTTCACCCTGGACCATCCAAAGACTGCCCCACCTGAGGAC  1000
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  TTAGTGAAAATTTCACCCTGGA-CATCCAAAGACTGCCCCA-CTGAGGAC  998

seq1  CTATTCCATATTCAGCCACCAAATGCAGACACTATTGAATATGCCAGCAA  1050
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  CTATTCCATATTCAGCCACCAAATGCAGACACTATTG-ATATGCCAGCA-  1046

seq1  GAATTTGCAGAAAGGACTCTGATGTAGTTGTCTCTGGGGAGGCTATGCCA  1100
        ||||||||||  |||||||||||||||||||||||||| |||||| ||
seq2  -GATTTGCAGAA--GACTCTGATGTAGTTGTCTCTGGGGA-GCTATG-CA  1091

seq1  GTGCCTGGCAAACACAGAAGTGGATGCTCACAGTCAGCTAT  1141
      |||| ||   ||||||||||| |||||||| ||||||||||
seq2  GTGCTTG--CAACACAGAAGT-GATGCTCA-AGTCAGCTAT  1128

seq1: chrY_2652627_2652692
seq2: B6Ng01-168B11.g_225_289

seq1  TCGCCATTACAAGATGGCGCTGATATCCGGTGTTCTAACTGGTAAACAAA  50
      ||||| ||||||||||||||||| |  | ||||||||| |||||||||||
seq2  TCGCCGTTACAAGATGGCGCTGACA-GCTGTGTTCTAAGTGGTAAACAAA  49

seq1  TAGTCTGCGCATGTGC  66
      || |||||||||||||
seq2  TAATCTGCGCATGTGC  65