BAC Information

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BAC

Clone NameB6Ng01-168C20
Chromosome14 (Build37)
Map Location 12,554,714 - 12,707,770
singlet/doubletdoublet
Overlap genePtprg
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream geneLOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps, EG432822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168C20.bB6Ng01-168C20.g
ACCDH959485DH959486
length1,2111,047
definitionDH959485|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C20, 5' end.DH959486|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,706,549 - 12,707,770)(12,554,714 - 12,555,782)
sequence
gaattcaagcaaaacctgtcacgaaaaggttactgctgagcagccgctca
aggcttgttgtcttctgacttttgcctaggagacagctaggcacggtttc
ataagcagtggctaagagcttaagatctgaggcatgggaagacagcctgc
cttacaagcacagggacccaatgttggttcccagacacacattaaaacac
tctgtgtttggtggcacacataatcccaaatccaaggacctactgatcct
aggggttgtgtggcccagtctactctacttggtgagcttgaggccaagga
gaccatgtctcaaaggaagtgaacagcctttctgaaaatgacattggata
ttgtctgttggtctccatgctagcataaatgtgtgtgtgtgtgtgtgtga
gtatcacattcattaaaataaacttcctgtccctaattaaattcatggca
ggtcattaaaaaggacatgacgacagaaagggaactgagaataagaggtg
cagagggagtggatggggaactgggatgtgcacatgatcaaactgcatta
tacacactaggaaactgtccacgaactaataaaaaatgtcatttaaaaaa
ccattttaaaaacccacctgagatctagtgtagaaagtgatatgccacac
accagttaactaacaccaaggccttgtatttaacattcctgtggctcaca
cacttcactttaaatatggacatgatatgagtgcctgcatctcatggctg
gtaggagaatcgtgttcatgcagtacttcgtctcaggctcagctttgatt
tcaacactttattcctctgtgtcaagcacacctcgaaaccttacatggac
attcaaaaaggaaacatacgttagcagaagttaagtgctattttgagcaa
tagagtgaagtctcacctcattccatttgccctcttctgccaccacgtga
atcctcccttcatccagcaacactgtgatgatacgctgcctactagttct
tcagcacactctagttgttacagtggggcagtgcttattatctaagtagt
tcttagatttctcagtcatgataccaaggaccaggatcaagcagcttact
ataattataccaacatataactagtactgggtatggatgttgacaaattg
gaaggccagaagaacccatgggtcaggaaattcccactgtcttcaagtca
ggcatctctag
gaattccaccccacctcctcctttgtgattcgaattatccaattagagtt
ttctctcaccattttctgataaatgaaggaaattgggagatggaggtcaa
aattatagacatatagcgtcttgccaagtcatgcaaagaaaatttatcat
tgtgtactctctggctgagggatcagtcatgaaggggcgtaaagtggcct
gttatttacagttcatcaatttagagtaataatgcagttaggcaggaaat
tggaagttataagacattgttgcaaatggcagtgaagaagccaaacttct
cccattactaagtacagccagggggaggtgagtggtggcgtttatggaat
ggggtcattgttgatgcccttatcacaggtgggtcttactcctctcttct
ggggtagcagagtatatgtgtctgggtttgggttctgcctccagctgaag
gctgatagttcacgtttagggactggcacacttatacttgaaagatctag
gtcataaatattctagaccttttccagacaagaatctttggccatagcac
tcatccctgccagcgcagcaccatagtggccctagatgatgctggaaagc
ctgggtgtgtggtgatgaaatcgtttgtgaggcctcggacttgagtcctg
ttacaaggcaatactttctcttggatttttttttttttaactgagcattt
caaagtgttcaggagcagtcttccgtcatgggctgtgcaagaacaggtag
ccagctggttagtgttcacaggctgcagtccctcaagttttgctttggta
aataggctcctactcccccaccccgacccttcagccttccccgctccccc
cagttcaggtagacatccacgaagaacttctgatggatctgacgagttgg
aggagttctcagccacttattgatcagggaaagaagagagcagaggaaaa
gacagttatatgtactctaagtacctcactgacttcttggtctggcagac
atcaaaggtagatctccacccttgcgctcacggatggagccgagacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12706549_12707770
seq2: B6Ng01-168C20.b_50_1260 (reverse)

seq1  CTAGAGAATGCCTGAACTTGAAGACAGTGTGGAACTCCCTGACCACTGTG  50
      |||||| ||||||| |||||||||||||| |||| | ||||||  |  ||
seq2  CTAGAG-ATGCCTG-ACTTGAAGACAGTG-GGAATTTCCTGAC--CCATG  45

seq1  GTTTCTTCTGTGCTTCCAAATCTGTCAACATCCATAACCAGTACTAAGTT  100
      | ||||||||  ||||| ||| |||||||||||||| |||||||| ||||
seq2  GGTTCTTCTGGCCTTCC-AATTTGTCAACATCCATACCCAGTACT-AGTT  93

seq1  AATATGTTGGTATAATTATAGTAAAGCTGCTTTGGTCTTGGTCTTTGGTA  150
       ||||||||||||||||||||| ||||||| ||| || ||||| ||||||
seq2  -ATATGTTGGTATAATTATAGT-AAGCTGC-TTGATCCTGGTCCTTGGTA  140

seq1  TCATGACTGAGAAATCTAAGAACTACTTAGAT-ATAAGCACTGCCACACT  199
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  TCATGACTGAGAAATCTAAGAACTACTTAGATAATAAGCACTGCCCCACT  190

seq1  GTAACAACCTAGAGTGTGCTGAAGAACTAGTAGGCAGCGTATCATCACAG  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAA-CTAGAGTGTGCTGAAGAACTAGTAGGCAGCGTATCATCACAG  239

seq1  TGTTGCTGGATGAAGGGAGGATTCACGTGGTGGCAGAAGAGGGCAAATGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGGATGAAGGGAGGATTCACGTGGTGGCAGAAGAGGGCAAATGG  289

seq1  AATGAGGTGAGACTTCACTCTATTGCTCAAAATAGCACTTAACTTCTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTGAGACTTCACTCTATTGCTCAAAATAGCACTTAACTTCTGCT  339

seq1  AACGTATGTTTCCTTTTTGAATGTCCATGTAAGGTTTTCGAGGTGTGCTT  399
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACGTATGTTTCCTTTTTGAATGTCCATGTAAGG-TTTCGAGGTGTGCTT  388

seq1  GACACAGAGGAATAAAGTGTTGAAATCAAAGCTGAGCCTGAGACGAAGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAGGAATAAAGTGTTGAAATCAAAGCTGAGCCTGAGACGAAGTA  438

seq1  CTGCATGAACACGATTCTCCTACCAGCCATGAGATGCAGGCACTCATATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGAACACGATTCTCCTACCAGCCATGAGATGCAGGCACTCATATC  488

seq1  ATGTCCATATTTAAAGTGAAGTGTGTGAGCCACAGGAATGTTAAATACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATATTTAAAGTGAAGTGTGTGAGCCACAGGAATGTTAAATACAA  538

seq1  GGCCTTGGTGTTAGTTAACTGGTGTGTGGCATATCACTTTCTACACTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGTGTTAGTTAACTGGTGTGTGGCATATCACTTTCTACACTAGA  588

seq1  TCTCAGGTGGGTTTTTAAAATGGTTTTTTAAATGACATTTTTTATTAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGTGGGTTTTTAAAATGGTTTTTTAAATGACATTTTTTATTAGTT  638

seq1  CGTGGACAGTTTCCTAGTGTGTATAATGCAGTTTGATCATGTGCACATCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGACAGTTTCCTAGTGTGTATAATGCAGTTTGATCATGTGCACATCC  688

seq1  CAGTTCCCCATCCACTCCCTCTGCACCTCTTATTCTCAGTTCCCTTTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCCATCCACTCCCTCTGCACCTCTTATTCTCAGTTCCCTTTCTG  738

seq1  TCGTCATGTCCTTTTTAATGACCTGCCATGAATTTAATTAGGGACAGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCATGTCCTTTTTAATGACCTGCCATGAATTTAATTAGGGACAGGAA  788

seq1  GTTTATTTTAATGAATGTGATACTCACACACACACACACACACATTTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTAATGAATGTGATACTCACACACACACACACACACATTTATG  838

seq1  CTAGCATGGAGACCAACAGACAATATCCAATGTCATTTTCAGAAAGGCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATGGAGACCAACAGACAATATCCAATGTCATTTTCAGAAAGGCTG  888

seq1  TTCACTTCCTTTGAGACATGGTCTCCTTGGCCTCAAGCTCACCAAGTAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCCTTTGAGACATGGTCTCCTTGGCCTCAAGCTCACCAAGTAGA  938

seq1  GTAGACTGGGCCACACAACCCCTAGGATCAGTAGGTCCTTGGATTTGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTGGGCCACACAACCCCTAGGATCAGTAGGTCCTTGGATTTGGGA  988

seq1  TTATGTGTGCCACCAAACACAGAGTGTTTTAATGTGTGTCTGGGAACCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTGCCACCAAACACAGAGTGTTTTAATGTGTGTCTGGGAACCAA  1038

seq1  CATTGGGTCCCTGTGCTTGTAAGGCAGGCTGTCTTCCCATGCCTCAGATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGTCCCTGTGCTTGTAAGGCAGGCTGTCTTCCCATGCCTCAGATC  1088

seq1  TTAAGCTCTTAGCCACTGCTTATGAAACCGTGCCTAGCTGTCTCCTAGGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCTTAGCCACTGCTTATGAAACCGTGCCTAGCTGTCTCCTAGGC  1138

seq1  AAAAGTCAGAAGACAACAAGCCTTGAGCGGCTGCTCAGCAGTAACCTTTT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAGAAGACAACAAGCCTTGAGCGGCTGCTCAGCAGTAACCTTTT  1188

seq1  CGTGACAGGTTTTGCTTGAATTC  1222
      |||||||||||||||||||||||
seq2  CGTGACAGGTTTTGCTTGAATTC  1211

seq1: chr14_12554714_12555782
seq2: B6Ng01-168C20.g_68_1114

seq1  GAATTCCACCCCACCTCCTCCTTTGTGATTCGAATTATCCAATTAGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCCACCTCCTCCTTTGTGATTCGAATTATCCAATTAGAGTT  50

seq1  TTCTCTCACCATTTTCTGATAAATGAAGGAAATTGGGAGATGGAGGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCACCATTTTCTGATAAATGAAGGAAATTGGGAGATGGAGGTCAA  100

seq1  AATTATAGACATATAGCGTCTTGCCAAGTCATGCAAAGAAAATTTATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGACATATAGCGTCTTGCCAAGTCATGCAAAGAAAATTTATCAT  150

seq1  TGTGTACTCTCTGGCTGAGGGATCAGTCATGAAGGGGCGTAAAGTGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTCTCTGGCTGAGGGATCAGTCATGAAGGGGCGTAAAGTGGCCT  200

seq1  GTTATTTACAGTTCATCAATTTAGAGTAATAATGCAGTTAGGCAGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTACAGTTCATCAATTTAGAGTAATAATGCAGTTAGGCAGGAAAT  250

seq1  TGGAAGTTATAAGACATTGTTGCAAATGGCAGTGAAGAAGCCAAACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTATAAGACATTGTTGCAAATGGCAGTGAAGAAGCCAAACTTCT  300

seq1  CCCATTACTAAGTACAGCCAGGGGGAGGTGAGTGGTGGCGTTTATGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTACTAAGTACAGCCAGGGGGAGGTGAGTGGTGGCGTTTATGGAAT  350

seq1  GGGGTCATTGTTGATGCCCTTATCACAGGTGGGTCTTACTCCTCTCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCATTGTTGATGCCCTTATCACAGGTGGGTCTTACTCCTCTCTTCT  400

seq1  GGGGTAGCAGAGTATATGTGTCTGGGTTTGGGTTCTGCCTCCAGCTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGCAGAGTATATGTGTCTGGGTTTGGGTTCTGCCTCCAGCTGAAG  450

seq1  GCTGATAGTTCACGTTTAGGGACTGGCACACTTATACTTGAAAGATCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAGTTCACGTTTAGGGACTGGCACACTTATACTTGAAAGATCTAG  500

seq1  GTCATAAATATTCTAGACCTTTTCCAGACAAGAATCTTTGGCCATAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAATATTCTAGACCTTTTCCAGACAAGAATCTTTGGCCATAGCAC  550

seq1  TCATCCCTGCCAGCGCAGCACCATAGTGGCCCTAGATGATGCTGGAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTGCCAGCGCAGCACCATAGTGGCCCTAGATGATGCTGGAAAGC  600

seq1  CTGGGTGTGTGGTGATGAAATCGTTTGTGAGGCCTCGGACTTGAGTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTGTGGTGATGAAATCGTTTGTGAGGCCTCGGACTTGAGTCCTG  650

seq1  TTACAAGGCAATACTTTCTCTTGGATTTTTTTTTTTTTAACTGAGCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGCAATACTTTCTCTTGGATTTTTTTTTTTTTAACTGAGCATTT  700

seq1  CAAAGTGTTCAGGAGCAGTCTTCCGTCATGGGCTGTGCAAGAACAGGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTTCAGGAGCAGTCTTCCGTCATGGGCTGTGCAAGAACAGGTAG  750

seq1  CCAGCTGGTTAGTGTTCACAGGCTGCAGTCCCTCAAGTTTTGCTTTGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGTTAGTGTTCACAGGCTGCAGTCCCTCAAGTTTTGCTTTGGTA  800

seq1  AATAGGCTCCTACTCCCCCAACCCCCGACCCTTCAGCCTCCCCCCGCTCC  850
      ||||||||||||||||||||  |||||||||||||||||  ||||||| |
seq2  AATAGGCTCCTACTCCCCCA--CCCCGACCCTTCAGCCT-TCCCCGCT-C  846

seq1  CCCCCAGTTCAGGTAGGACAGTCCACGAAGAACCTTCTGATGGATCTGAC  900
      ||||||||||||||| |||| ||||||||||| |||||||||||||||||
seq2  CCCCCAGTTCAGGTA-GACA-TCCACGAAGAA-CTTCTGATGGATCTGAC  893

seq1  GAGTTTGGAGGAGTTTCTCAAGCCACTTATTAGATACAGGGAAAGAAAGA  950
      ||| ||||||||| ||||| ||||||||||| ||| ||||||||| ||||
seq2  GAG-TTGGAGGAG-TTCTC-AGCCACTTATT-GAT-CAGGGAAAG-AAGA  937

seq1  GGAGCAGAGGAAAAAGACAGGTCATATGGACTCTGAGGACCTCACCTGAC  1000
       ||||||||| |||||||| || ||||| ||||| || |||||| |||||
seq2  -GAGCAGAGG-AAAAGACA-GTTATATGTACTCTAAGTACCTCA-CTGAC  983

seq1  ATTCTTGGGTCTGGCAGACATTCAAATGTTAGATCTCCACACATACGCTC  1050
       ||||| ||||||||||||| ||||| | ||||||||||| | | |||||
seq2  -TTCTT-GGTCTGGCAGACA-TCAAA-GGTAGATCTCCACCCTTGCGCTC  1029

seq1  AGGGATGGAGCCCGAGACC  1069
      | |||||||| ||||||||
seq2  ACGGATGGAG-CCGAGACC  1047