BAC Information

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BAC

Clone NameB6Ng01-168F01
Chromosome14 (Build37)
Map Location 33,359,987 - 33,489,681
singlet/doubletdoublet
Overlap geneErcc6, 9430077A04Rik, Prrxl1, 3425401B19Rik
Upstream geneColq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618
Downstream gene1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168F01.bB6Ng01-168F01.g
ACCDH959585DH959586
length1,0291,101
definitionDH959585|Mus musculus domesticus DNA, BAC clone: B6Ng01-168F01, 5' end.DH959586|Mus musculus domesticus DNA, BAC clone: B6Ng01-168F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,489,141 - 33,489,681)(33,359,987 - 33,361,103)
sequence
gaattctaccagtgactcagccaatatacgtatatagaagtgtgtcccaa
gcctcccaccctgtgtatgccctgcttctctccaccttcccccaactcct
aaaggagcccacacatttggccatttcatcgttttctggtatagactgga
tgtttgtgccccccaaaacttatatgttgaagcactaattccacacaggc
tagtgtttagaggctggcctgtgagggataatttagttagagggtagagt
ccttacgagtacctttaaaagagaagaccagaaagacaccaccaccatgt
atagatagattaagaggatatccattcacaaccaggaatagagcctcacc
tgccgcagaccctctgggttccttgtctgcatggaatgactctctggagc
aggtgggcaaggcgtcggctggaactgacagacagacccaacacaaggga
gtgtggatctgaatgtaatttttcaaattgagcatcaaactttttataga
gaagaaaatagggaagttgggtgacacatcggcaaggtacaaggaggtta
ctggattcttacacaaaacaaaggaatacaaatatggaataactggcagg
aaccaactggggtaaaactcaatgttaactactgggatcaaaaacagctc
cacctaaggtccacttaatcttagaagtcaggggcaagggcttcgtgccc
ttgccatagttcctactctagtctattgtatagtccaccttccccctagg
ccattgtaaatacttgtttgtgtatgggtgtaactcagctacctatagtt
ctaagtatctactctggttcctttttaggtcacaaacttccttctttcta
gataatggtaaattttctgtgtagggcagtgacttagctatccatgccca
aggttggatcaaggactgcctagaaactaacttagctatatgtcaaaata
tcaatcctcaaggagcacttgtataaagcaatgttaagggaaagcacaca
gatccgtttaccaactaaagcaagacatt
gaattctgggagacgaaatgggattgggcaagaccatccagataattgcc
ttcttggcaggtctgagctacagcaagatcaggactcgcggttcaaatta
caggcaagtgctcctctgcagactgtcagtctgtggagctcaattaatat
ttcatcagatggattgctgtggaggagggtcttgtgaattattgatgaca
tttcaattacaatattcctttaattcttttagtgggggacatcaaaggaa
aaattttacgagacaatggagctgtagggcaggagaaattaaacatgtaa
cacttgtaatgaattccaggcgttgatgcttcattttgcagatgggcccc
actagatattttgggtcaatacaatgtctaaggttagctcttgcaaatgg
attgtttacaaactcaattatgttaatatcaatagtttacacaatatgga
attttaaattagacataatacctttagtcccatttattaaattttacatt
aaaatatttgttctggcaggagaccaggtgagcattacagtaaggatgag
tctgctcctgggcaaagttggagctttgaagaagccttcctctacagttt
tcgtactctaagtccgtgtgttggatagcatttagatgtgtgctcatcct
cttggagtgaaatgacttagtctgctcaggatgttttagactcccttccc
aagttcagcacctgaatgacttccagaaagtgtagacagaagaatgagca
tttactctgtttgcagggagcactgaaatgtttgttcttgtagtaaaaga
cctgtgagcatttacctggcttaagttgtaatttatcttatggaaatcta
tattggtaacaatgttgtgagataaatgacataggatgtttgatcttgga
cacggatatgttctaggagtttatctaatgagtagcagtgatggagttac
caggtggatctgtgtctgtgacttgagcactctctgtatgcagtttgcag
atattttgaaatagtgtgatgtgttgaaagtcagcactgcagaacatatg
cccacatttagagtgtcacaaaaatgtgtagtagggacgatatgtccata
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_33489141_33489681
seq2: B6Ng01-168F01.b_47_587 (reverse)

seq1  TGTACCTTGCCGATGTGTCACCCAACTTCCCTATTTTCTTCTCTATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTGCCGATGTGTCACCCAACTTCCCTATTTTCTTCTCTATAAAA  50

seq1  AGTTTGATGCTCAATTTGAAAAATTACATTCAGATCCACACTCCCTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATGCTCAATTTGAAAAATTACATTCAGATCCACACTCCCTTGTG  100

seq1  TTGGGTCTGTCTGTCAGTTCCAGCCGACGCCTTGCCCACCTGCTCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTGTCTGTCAGTTCCAGCCGACGCCTTGCCCACCTGCTCCAGAG  150

seq1  AGTCATTCCATGCAGACAAGGAACCCAGAGGGTCTGCGGCAGGTGAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCCATGCAGACAAGGAACCCAGAGGGTCTGCGGCAGGTGAGGCT  200

seq1  CTATTCCTGGTTGTGAATGGATATCCTCTTAATCTATCTATACATGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTGGTTGTGAATGGATATCCTCTTAATCTATCTATACATGGTGG  250

seq1  TGGTGTCTTTCTGGTCTTCTCTTTTAAAGGTACTCGTAAGGACTCTACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTTTCTGGTCTTCTCTTTTAAAGGTACTCGTAAGGACTCTACCC  300

seq1  TCTAACTAAATTATCCCTCACAGGCCAGCCTCTAAACACTAGCCTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTAAATTATCCCTCACAGGCCAGCCTCTAAACACTAGCCTGTGTG  350

seq1  GAATTAGTGCTTCAACATATAAGTTTTGGGGGGCACAAACATCCAGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGTGCTTCAACATATAAGTTTTGGGGGGCACAAACATCCAGTCTA  400

seq1  TACCAGAAAACGATGAAATGGCCAAATGTGTGGGCTCCTTTAGGAGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAAAACGATGAAATGGCCAAATGTGTGGGCTCCTTTAGGAGTTGG  450

seq1  GGGAAGGTGGAGAGAAGCAGGGCATACACAGGGTGGGAGGCTTGGGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTGGAGAGAAGCAGGGCATACACAGGGTGGGAGGCTTGGGACAC  500

seq1  ACTTCTATATACGTATATTGGCTGAGTCACTGGTAGAATTC  541
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATATACGTATATTGGCTGAGTCACTGGTAGAATTC  541

seq1: chr14_33359987_33361103
seq2: B6Ng01-168F01.g_66_1166

seq1  GAATTCTGGGAGACGAAATGGGATTGGGCAAGACCATCCAGATAATTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGACGAAATGGGATTGGGCAAGACCATCCAGATAATTGCC  50

seq1  TTCTTGGCAGGTCTGAGCTACAGCAAGATCAGGACTCGCGGTTCAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCAGGTCTGAGCTACAGCAAGATCAGGACTCGCGGTTCAAATTA  100

seq1  CAGGCAAGTGCTCCTCTGCAGACTGTCAGTCTGTGGAGCTCAATTAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGTGCTCCTCTGCAGACTGTCAGTCTGTGGAGCTCAATTAATAT  150

seq1  TTCATCAGATGGATTGCTGTGGAGGAGGGTCTTGTGAATTATTGATGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGATGGATTGCTGTGGAGGAGGGTCTTGTGAATTATTGATGACA  200

seq1  TTTCAATTACAATATTCCTTTAATTCTTTTAGTGGGGGACATCAAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTACAATATTCCTTTAATTCTTTTAGTGGGGGACATCAAAGGAA  250

seq1  AAATTTTACGAGACAATGGAGCTGTAGGGCAGGAGAAATTAAACATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTACGAGACAATGGAGCTGTAGGGCAGGAGAAATTAAACATGTAA  300

seq1  CACTTGTAATGAATTCCAGGCGTTGATGCTTCATTTTGCAGATGGGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTAATGAATTCCAGGCGTTGATGCTTCATTTTGCAGATGGGCCCC  350

seq1  ACTAGATATTTTGGGTCAATACAATGTCTAAGGTTAGCTCTTGCAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATATTTTGGGTCAATACAATGTCTAAGGTTAGCTCTTGCAAATGG  400

seq1  ATTGTTTACAAACTCAATTATGTTAATATCAATAGTTTACACAATATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTACAAACTCAATTATGTTAATATCAATAGTTTACACAATATGGA  450

seq1  ATTTTAAATTAGACATAATACCTTTAGTCCCATTTATTAAATTTTACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATTAGACATAATACCTTTAGTCCCATTTATTAAATTTTACATT  500

seq1  AAAATATTTGTTCTGGCAGGAGACCAGGTGAGCATTACAGTAAGGATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTGTTCTGGCAGGAGACCAGGTGAGCATTACAGTAAGGATGAG  550

seq1  TCTGCTCCTGGGCAAAGTTGGAGCTTTGAAGAAGCCTTCCTCTACAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCTGGGCAAAGTTGGAGCTTTGAAGAAGCCTTCCTCTACAGTTT  600

seq1  TCGTACTCTAAGTCCGTGTGTTGGATAGCATTTAGATGTGTGCTCATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTACTCTAAGTCCGTGTGTTGGATAGCATTTAGATGTGTGCTCATCCT  650

seq1  CTTGGAGTGAAATGACTTAGTCTGCTCAGGATGTTTTAGACTCCCTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTGAAATGACTTAGTCTGCTCAGGATGTTTTAGACTCCCTTCCC  700

seq1  AAGTTCAGCACCTGAATGACTTCCAGAAAGTGTAGACAGAAGAATGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGCACCTGAATGACTTCCAGAAAGTGTAGACAGAAGAATGAGCA  750

seq1  TTTACTCTGTTTGCAGGGAGCACTGAAATGTTTGTTCTTGTAGTAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTGTTTGCAGGGAGCACTGAAATGTTTGTTCTTGTAGTAAAAGA  800

seq1  CCTGTGAGCATTTACCTGGCTTAAGTTGTAATTTATCTTATGGAAATCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGCATTTACCTGGCTTAAGTTGTAATTTATCTTATGGAAATCTA  850

seq1  TATTGGTAACAATGTTGTGAGATAAATGACATAGGATGTTTGATCTTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTAACAATGTTGTGAGATAAATGACATAGGATGTTTGATCTTGGA  900

seq1  CACGGATATGTTCTAGGAGGTTTATCTAATGAGTAGCAGTGATGGAGTTA  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACGGATATGTTCTAGGA-GTTTATCTAATGAGTAGCAGTGATGGAGTTA  949

seq1  CCAGGTGGATCTGTGTCCTGTGACTTGAGGCACTCTCTGTATGCAGTTTG  1000
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  CCAGGTGGATCTGTGT-CTGTGACTTGA-GCACTCTCTGTATGCAGTTTG  997

seq1  CAGATATTTTTGAAATAGTGTTGATGTGTTGAAAGTCAGCAACTGCAGAA  1050
      |||||| ||||||||||||| ||||||||||||||||||| |||||||||
seq2  CAGATA-TTTTGAAATAGTG-TGATGTGTTGAAAGTCAGC-ACTGCAGAA  1044

seq1  CATTATTGCCCACATTTTAAGGAAGTGTCACAAAAATGTGTAGTAGGGAA  1100
      |||   |||||||||||  ||  |||||||||||||||||||||||||| 
seq2  CAT--ATGCCCACATTT--AG--AGTGTCACAAAAATGTGTAGTAGGGA-  1087

seq1  CCAGATATGTCCCATAA  1117
         ||||||| ||||||
seq2  --CGATATGT-CCATAA  1101