BAC Information

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BAC

Clone NameB6Ng01-168M22
Chromosome14 (Build37)
Map Location 34,415,743 - 34,538,105
singlet/doubletdoublet
Overlap genePtpn20
Upstream genePrrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093
Downstream geneGdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168M22.bB6Ng01-168M22.g
ACCDH959951DH959952
length9971,125
definitionDH959951|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M22, 5' end.DH959952|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,537,556 - 34,538,105)(34,415,743 - 34,416,876)
sequence
gaattcaggaaactacctcctaacactgtgatgggagaaaccagtagtga
ttgaaaaatgaaaaaaatgaagttataaaaaaacagaatattttgtcttt
taattaaaaaaagcgaatcagatagctggagaggtgtgtatacttgtgga
tctcctgctcaattctgtggaccgttttctgtgttaataactgcacgtct
ttgtaaggatggcctctggtaataacttgaaatctagtgttgtgattttt
cctgcatgactcatttgcatgcttgtgcccattggaggtcccttcatctt
gcctatagagtttaggattctttttccaggtctgtgaagaattgtattgt
tggggctgctctgttgactctgctgctgacatcgctttcagggagacagt
cgtcttcacagtactgaacctattctgccaatacccagcatgggaagtct
ttccagcttctggtggctttttcaatttcttcttccattgttttaaagat
tttattgtgaagctttttcatcttctcagttacatatattccccaagcat
tttaacttttgaagttattatgaatgttttttttttctcccagacctctc
atcttgtttgttactagcacatggaaaagctgttgttgttttatgttgat
gagtgtctggctattttgtagatagtgcttattaggtggcttcctgctgg
tgccttgaagatcctctgtacatggcacttgtcttctgtaggtggcataa
tttgatgtcttcctttcccacttttacctgttctgtttctctctcctgtc
ctaccgctaaacactgtattgagtaagacgaggggagttagcatttctga
cttagaggaagtgcttcacgttctttttccctattcagtgtaatactggt
cacagggttgtcgcatgtagcctttattatattgagatacactccttcta
ttcctagtttcttctactctttgatcatgagcagatgttggatgcat
gaattcctttgtatttggtctggagggtgatctatgatagccatatttgg
ggtttcaaatgagtgagcttaagtggaaagcaaaagtacaagactagcaa
gtagcaaagagaagcaacagcaagacaggcaaacagcatcccatcaggtg
cagcagcagcagaggtgtggaagcctgtgagagaaaaaaacaaagtaatt
ctttcagatcagacacacacagtagccagcagaaatgactgcagtaacct
ctgttggaaatggcttaccttctccttccactcaagggtgcaatactttc
agtatacttagctgcatgaagttaaaagctggttgtagaatgatatctca
taggggataccacagcctgaaaaaccactgttttatacagtgtggagtaa
cttaggaataggggcatagcctgatatccacagtggtgagttgtatgacc
ttgttcaattcctgtcctgcagctcaacagagaactaaatattcattaac
tcaatattaatttctgtccattcatccagtctcccttttgtttttctcta
gggttatgtctgactcactgcactggagtttggcaaaagcatctcagaag
tggttgtgcttttttgaatgaaatgatcaatggtaacttaattgtcactt
tgaatattggttaactttatatagaaaaagaaacaaaaattttgttttaa
aaacctcctagccatgctagaaacaattttttaaaggcataaaacattgt
ttggatgacttttacttttgtagagtgcatctggtgattattgggtataa
attaataaatattgtaccctacttattcttgaactagagcaatctaattt
atgtatatttatgtaaggagaacaagtcattaaatttgagtttttcacac
atttattttgtgggctgtcagtatgaggtatggcatatttaaaccctgat
gttaaataagaaattaggtctctacttaccaggatatttagaacttacag
acagaattccagggaaattaatttggctctaattaaaagagctgtgaaca
catgttacgatgtggttgggaggaaagaggatggccataatcagaggttc
ttaaccacaaagctcagcatctcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_34537556_34538105
seq2: B6Ng01-168M22.b_46_595 (reverse)

seq1  ATGCTTGGGGAATATATGTAACTGAGAAGATGAAAAAGCTTCACAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGGGGAATATATGTAACTGAGAAGATGAAAAAGCTTCACAATAAA  50

seq1  ATCTTTAAAACAATGGAAGAAGAAATTGAAAAAGCCACCAGAAGCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAAACAATGGAAGAAGAAATTGAAAAAGCCACCAGAAGCTGGAA  100

seq1  AGACTTCCCATGCTGGGTATTGGCAGAATAGGTTCAGTACTGTGAAGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCCATGCTGGGTATTGGCAGAATAGGTTCAGTACTGTGAAGACG  150

seq1  ACTGTCTCCCTGAAAGCGATGTCAGCAGCAGAGTCAACAGAGCAGCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCCCTGAAAGCGATGTCAGCAGCAGAGTCAACAGAGCAGCCCCA  200

seq1  ACAATACAATTCTTCACAGACCTGGAAAAAGAATCCTAAACTCTATAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACAATTCTTCACAGACCTGGAAAAAGAATCCTAAACTCTATAGGC  250

seq1  AAGATGAAGGGACCTCCAATGGGCACAAGCATGCAAATGAGTCATGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAGGGACCTCCAATGGGCACAAGCATGCAAATGAGTCATGCAGG  300

seq1  AAAAATCACAACACTAGATTTCAAGTTATTACCAGAGGCCATCCTTACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCACAACACTAGATTTCAAGTTATTACCAGAGGCCATCCTTACAA  350

seq1  AGACGTGCAGTTATTAACACAGAAAACGGTCCACAGAATTGAGCAGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTGCAGTTATTAACACAGAAAACGGTCCACAGAATTGAGCAGGAGA  400

seq1  TCCACAAGTATACACACCTCTCCAGCTATCTGATTCGCTTTTTTTAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAGTATACACACCTCTCCAGCTATCTGATTCGCTTTTTTTAATTA  450

seq1  AAAGACAAAATATTCTGTTTTTTTATAACTTCATTTTTTTCATTTTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAATATTCTGTTTTTTTATAACTTCATTTTTTTCATTTTTCAA  500

seq1  TCACTACTGGTTTCTCCCATCACAGTGTTAGGAGGTAGTTTCCTGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACTGGTTTCTCCCATCACAGTGTTAGGAGGTAGTTTCCTGAATTC  550

seq1: chr14_34415743_34416876
seq2: B6Ng01-168M22.g_69_1193

seq1  GAATTCCTTTGTATTTGGTCTGGAGGGTGATCTATGATAGCCATATTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGTATTTGGTCTGGAGGGTGATCTATGATAGCCATATTTGG  50

seq1  GGTTTCAAATGAGTGAGCTTAAGTGGAAAGCAAAAGTACAAGACTAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAAATGAGTGAGCTTAAGTGGAAAGCAAAAGTACAAGACTAGCAA  100

seq1  GTAGCAAAGAGAAGCAACAGCAAGACAGGCAAACAGCATCCCATCAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAGAGAAGCAACAGCAAGACAGGCAAACAGCATCCCATCAGGTG  150

seq1  CAGCAGCAGCAGAGGTGTGGAAGCCTGTGAGAGAAAAAAACAAAGTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAGCAGAGGTGTGGAAGCCTGTGAGAGAAAAAAACAAAGTAATT  200

seq1  CTTTCAGATCAGACACACACAGTAGCCAGCAGAAATGACTGCAGTAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGATCAGACACACACAGTAGCCAGCAGAAATGACTGCAGTAACCT  250

seq1  CTGTTGGAAATGGCTTACCTTCTCCTTCCACTCAAGGGTGCAATACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGAAATGGCTTACCTTCTCCTTCCACTCAAGGGTGCAATACTTTC  300

seq1  AGTATACTTAGCTGCATGAAGTTAAAAGCTGGTTGTAGAATGATATCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTTAGCTGCATGAAGTTAAAAGCTGGTTGTAGAATGATATCTCA  350

seq1  TAGGGGATACCACAGCCTGAAAAACCACTGTTTTATACAGTGTGGAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGATACCACAGCCTGAAAAACCACTGTTTTATACAGTGTGGAGTAA  400

seq1  CTTAGGAATAGGGGCATAGCCTGATATCCACAGTGGTGAGTTGTATGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAATAGGGGCATAGCCTGATATCCACAGTGGTGAGTTGTATGACC  450

seq1  TTGTTCAATTCCTGTCCTGCAGCTCAACAGAGAACTAAATATTCATTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCAATTCCTGTCCTGCAGCTCAACAGAGAACTAAATATTCATTAAC  500

seq1  TCAATATTAATTTCTGTCCATTCATCCAGTCTCCCTTTTGTTTTTCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTAATTTCTGTCCATTCATCCAGTCTCCCTTTTGTTTTTCTCTA  550

seq1  GGGTTATGTCTGACTCACTGCACTGGAGTTTGGCAAAAGCATCTCAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATGTCTGACTCACTGCACTGGAGTTTGGCAAAAGCATCTCAGAAG  600

seq1  TGGTTGTGCTTTTTTGAATGAAATGATCAATGGTAACTTAATTGTCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGCTTTTTTGAATGAAATGATCAATGGTAACTTAATTGTCACTT  650

seq1  TGAATATTGGTTAACTTTATATAGAAAAAGAAACAAAAATTTTGTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTGGTTAACTTTATATAGAAAAAGAAACAAAAATTTTGTTTTAA  700

seq1  AAACCTCCTAGCCATGCTAGAAACAATTTTTTAAAGGCATAAAACATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCTAGCCATGCTAGAAACAATTTTTTAAAGGCATAAAACATTGT  750

seq1  TTGGATGACTTTTACTTTTGTAGAGTGCATCTGGTGATTATTGGGTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGACTTTTACTTTTGTAGAGTGCATCTGGTGATTATTGGGTATAA  800

seq1  ATTAATAAATATTGTACCCTACTTATTCTTGAACTAGAGCAATCTAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAATATTGTACCCTACTTATTCTTGAACTAGAGCAATCTAATTT  850

seq1  ATGTATATTTATGTAAGGAGAACAAGTCATTAAATTTGAGTTTTTCACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATTTATGTAAGGAGAACAAGTCATTAAATTTGAGTTTTTCACAC  900

seq1  ATTTATTTGGTGGGCTGTCAGGTATGAGGTATGGCATATTTAAACCCTGA  950
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  ATTTATTTTGTGGGCTGTCA-GTATGAGGTATGGCATATTTAAACCCTGA  949

seq1  TGTTAAATAAGAAATTAGGTCTCTACTTACCAAGGAATATTTAGAACTTA  1000
      ||||||||||||||||||||||||||||||||  | ||||||||||||| 
seq2  TGTTAAATAAGAAATTAGGTCTCTACTTACCA--GGATATTTAGAACTT-  996

seq1  ACAGACAGAATTCCAAGGGAAATTAATTTTGGCTCTAATTAAAAAGAGCT  1050
      |||||||||||||| ||||||||||| ||||||||||||| |||||||||
seq2  ACAGACAGAATTCC-AGGGAAATTAA-TTTGGCTCTAATT-AAAAGAGCT  1043

seq1  GTTGAACACATGTTTAACGATGTGGTTGGGAGGACAGAGGATTGCCATTA  1100
      | ||||||||||||  |||||||||||||||||| ||||||| ||||| |
seq2  G-TGAACACATGTT--ACGATGTGGTTGGGAGGAAAGAGGATGGCCATAA  1090

seq1  TCAGAGGTTCTT-AGCACAAAGCTCAGCATCTCAG  1134
      |||||||||||| | ||||||||||||||||||||
seq2  TCAGAGGTTCTTAACCACAAAGCTCAGCATCTCAG  1125