BAC Information

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BAC

Clone NameB6Ng01-169C06
Chromosome14 (Build37)
Map Location 83,841,072 - 83,990,688
singlet/doubletdoublet
Overlap geneLOC100043773
Upstream genenone
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169C06.bB6Ng01-169C06.g
ACCDH960195DH960196
length1,1561,128
definitionDH960195|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C06, 5' end.DH960196|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,841,072 - 83,842,243)(83,989,540 - 83,990,688)
sequence
gaattccaaatctaatctccagggaagaaattcagacccaattagtgaaa
gtacaagtttttattgcaaggaaagaaagaaaattgcagtatatctaaat
gaaattatcaccctcttcatgcattactcattgttcagtgatgtttgctt
tatggcaagaacatgctttcttctatttgtctctgacatgtggtgacatt
tgcttttcacctattttaatatccagagcttttcaaccttgggttcacag
aacatgttattctaagctaaaggtagctctatgcctaccttgaagcttta
aactttgcaattttaatgaaattactcattgtgattatacaaatagtgct
ttcagtttgctgttatccatctccaaagtttaataatgcagggcacatga
aatcatcacttatattattgcaagcctgcaaactggactgctttacctgt
atccttgttattctttactgtgctcagagtaagaacaggaaacttctttc
aagtaacagtttcattttatattgatcaagttaagtgaaggaactttacc
cagtaaccaagtgaggtgagggcactctaaaaaagaggtcactaatgtgt
gaacaatgtagctaccattaaaaataatggtatttgctttttcctagagt
tatatttagttcaataatttaatctgaataagtggtattcattcactctg
ttttttttaataccccctgaagaatcaagatcttcactgaaaactcagtg
taacttcacggcctaacaacagctatgggagagagtttacatagactacc
tctctggacaaagacctcttggtatacatccagagaaatttaggctttaa
tggaatttcagtcaagagttcacccccctccagctgctgatatttaaaat
gtttgctttataagcccataatctctggccatttttctctggggtgtctg
taagcatcaccagactgtcttcctcagagtctcatactcagtcatggcag
tttcaatttcccatgtgtgctgtttcataactacttcctccccaaaactc
ctccaaattgggaggcaaatttattaacttgagaaccttggtatgaccga
atcttgatctggtctttcctaagtatatttgtagggacataatcagacct
ttctct
gaattcactctatttttttgtctttgtttgtttgcattgagcctcactca
acatgtataatctttaaaatatttatgttaaatttgaatactaagggtcc
caacccaaatcttggtttgggttgtgagatccattccctcatctcaaagg
tagaaaagaaggaactgggctgtttgcttgttctagcattttctgggcag
tgtgttagtaaccagctataaaaatcggtagaactatatgttagttatta
ttctctttgctgctatcaaatacctgatgagaagcaacttgaaggcagac
gggatttattttgacttcttatgggatggcatgatgagaggattggcttc
tatctttcctagtgaaagcctgtagcatggcatgctaccaaacagtgcac
aagaaggagagaactttatctctatcacatctgtcagctaattccatgtc
taaaagattccagaatcttccaaagcatagcaagctagggacaaagaaag
taaattcaataatgcacagtggtcaactaggaacacttgtgtggagtatt
aaacaagggcacaacaccactgtccatactcaaactagatggaactagac
tcagaacacaggttgatgtttaatataatgaatcttatgcctcagtgaca
atgctgtgtgatttacaattatagctcttttcttttactttttctttatt
caaaacagatatatttgtatattcttctctcatatattatatgaaaacca
cagttttgtctccctgacagtcacccccacctccatttacgtccagaccc
aattctactatttattttctgaaaagtgcaggtctaccagaattatcaac
caaatatggtcagtatacaagttccactgaagctaggtacattctttcat
tctttcatatcaggctgaacaaaggtaaaccagtaggaagaatagggctc
aaaagcagacaaaggcatacccatgctcccactttaggagtcacacaaca
acacaagcttatacaacataagaaatattcaggcactaaatgacatacat
gttccctaattgtcagtaaatcttgtgagccgcatggctttgtcacttga
attctttggacatgctcttatgagtcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_83841072_83842243
seq2: B6Ng01-169C06.b_47_1202

seq1  GAATTCCAAATCTAATCTCCAGGGAAGAAATTCAGACCCAATTAGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATCTAATCTCCAGGGAAGAAATTCAGACCCAATTAGTGAAA  50

seq1  GTACAAGTTTTTATTGCAAGGAAAGAAAGAAAATTGCAGTATATCTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGTTTTTATTGCAAGGAAAGAAAGAAAATTGCAGTATATCTAAAT  100

seq1  GAAATTATCACCCTCTTCATGCATTACTCATTGTTCAGTGATGTTTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATCACCCTCTTCATGCATTACTCATTGTTCAGTGATGTTTGCTT  150

seq1  TATGGCAAGAACATGCTTTCTTCTATTTGTCTCTGACATGTGGTGACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAAGAACATGCTTTCTTCTATTTGTCTCTGACATGTGGTGACATT  200

seq1  TGCTTTTCACCTATTTTAATATCCAGAGCTTTTCAACCTTGGGTTCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCACCTATTTTAATATCCAGAGCTTTTCAACCTTGGGTTCACAG  250

seq1  AACATGTTATTCTAAGCTAAAGGTAGCTCTATGCCTACCTTGAAGCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTATTCTAAGCTAAAGGTAGCTCTATGCCTACCTTGAAGCTTTA  300

seq1  AACTTTGCAATTTTAATGAAATTACTCATTGTGATTATACAAATAGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGCAATTTTAATGAAATTACTCATTGTGATTATACAAATAGTGCT  350

seq1  TTCAGTTTGCTGTTATCCATCTCCAAAGTTTAATAATGCAGGGCACATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTGCTGTTATCCATCTCCAAAGTTTAATAATGCAGGGCACATGA  400

seq1  AATCATCACTTATATTATTGCAAGCCTGCAAACTGGACTGCTTTACCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCACTTATATTATTGCAAGCCTGCAAACTGGACTGCTTTACCTGT  450

seq1  ATCCTTGTTATTCTTTACTGTGCTCAGAGTAAGAACAGGAAACTTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTTATTCTTTACTGTGCTCAGAGTAAGAACAGGAAACTTCTTTC  500

seq1  AAGTAACAGTTTCATTTTATATTGATCAAGTTAAGTGAAGGAACTTTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACAGTTTCATTTTATATTGATCAAGTTAAGTGAAGGAACTTTACC  550

seq1  CAGTAACCAAGTGAGGTGAGGGCACTCTAAAAAAGAGGTCACTAATGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACCAAGTGAGGTGAGGGCACTCTAAAAAAGAGGTCACTAATGTGT  600

seq1  GAACAATGTAGCTACCATTAAAAATAATGGTATTTGCTTTTTCCTAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGTAGCTACCATTAAAAATAATGGTATTTGCTTTTTCCTAGAGT  650

seq1  TATATTTAGTTCAATAATTTAATCTGAATAAGTGGTATTCATTCACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAGTTCAATAATTTAATCTGAATAAGTGGTATTCATTCACTCTG  700

seq1  TTTTTTTTAATACCCCCTGAAGAATCAAGATCTTCACTGAAAACTCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATACCCCCTGAAGAATCAAGATCTTCACTGAAAACTCAGTG  750

seq1  TAACTTCACGGCCTAACAACAGCTATGGGAGAGAGTTTACATAGACTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCACGGCCTAACAACAGCTATGGGAGAGAGTTTACATAGACTACC  800

seq1  TCTCTGGACAAAGACCTCTTGGTATACATCCAGAGAAATTTAGGCTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGACAAAGACCTCTTGGTATACATCCAGAGAAATTTAGGCTTTAA  850

seq1  TGGAATTTCAGTCAAGAGTTCACCCCCCTCCAGCTGCTGATATTTAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTCAGTCAAGAGTTCACCCCCCTCCAGCTGCTGATATTTAAAAT  900

seq1  GTTTGCTTTATAAGCCCATAATCTCTGGCCATTTTTCTCTGGGGTGTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTTATAAGCCCATAATCTCTGGCCATTTTTCTCTGGGGTGTCTG  950

seq1  TAAGCATCACCAGACTGTCTTCCTCAGAGTCTCATACTCAAGTCATTGGC  1000
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TAAGCATCACCAGACTGTCTTCCTCAGAGTCTCATACTC-AGTCA-TGGC  998

seq1  AGTTTTCAATTTCCCCATGTGTGCCTGTTTTCATAACTACTTTCCTCCCC  1050
      || ||||||||| |||||||||| ||| |||||||||||| |||||||||
seq2  AG-TTTCAATTT-CCCATGTGTG-CTG-TTTCATAACTAC-TTCCTCCCC  1043

seq1  AAAACTCTCCAAAATTGGGAGGCAAAATCTATT-ACTTGAGAACCCTTGG  1099
      |||||||  | |||||||||||| |||| |||| ||||||||| ||||||
seq2  AAAACTCCTCCAAATTGGGAGGC-AAATTTATTAACTTGAGAA-CCTTGG  1091

seq1  TAGTGACCCAGAATCTTTGAATCTGGGTCCTTCCCTAAGTATA-TTGTAG  1148
      || |||||  |||||||   ||||||   ||| |||||||||| ||||| 
seq2  TA-TGACC--GAATCTT--GATCTGG--TCTTTCCTAAGTATATTTGTA-  1133

seq1  GGGGACATAATCAGCACTTTCTCT  1172
       |||||||||||||  ||||||||
seq2  -GGGACATAATCAGACCTTTCTCT  1156

seq1: chr14_83989540_83990688
seq2: B6Ng01-169C06.g_68_1195 (reverse)

seq1  AGGACATCATAAGAGCATGGTCAAAAGAA-TCAAGTGACAAAAGCTCATG  49
      ||||| |||||||||||| ||| |||||| ||||||||| ||||| ||||
seq2  AGGAC-TCATAAGAGCAT-GTCCAAAGAATTCAAGTGAC-AAAGC-CATG  46

seq1  CAGGCTCACAAAGATTTTACTGACAATTAGGGAACATGTGTATGTCATTT  99
      | ||||||| |||| |||||||||||||||||||||  ||||||||||||
seq2  C-GGCTCAC-AAGA-TTTACTGACAATTAGGGAACA--TGTATGTCATTT  91

seq1  TTAGGTGCCCTGAATATTTCTTATGGTTGTATAGCTTTGTGTTGTTGTGG  149
          ||| |||||||||||||||| ||||||||   |||||||||||| |
seq2  ---AGTG-CCTGAATATTTCTTAT-GTTGTATAAGCTTGTGTTGTTGT-G  135

seq1  TGAACTCCTAAAAGTGGGAGCATGGGTTATGCCTTTTGTCTGCTTTTTGG  199
      || |||||| |||||||||||||||| |||||| |||||||||||||  |
seq2  TG-ACTCCT-AAAGTGGGAGCATGGG-TATGCC-TTTGTCTGCTTTT--G  179

seq1  AGCCCTATTCTTCCTACTGGTTTACCTTTGTTCAGCCTTGATATGAAAGA  249
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGCCCTATTCTTCCTACTGGTTTACCTTTGTTCAGCC-TGATATGAAAGA  228

seq1  ATGAAAGAATGTACCTAGCTTCAGTGGAACTTGTATACTGACCATATTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAATGTACCTAGCTTCAGTGGAACTTGTATACTGACCATATTTG  278

seq1  GTTGATAATTCTGGTAGACCTGCACTTTTCAGAAAATAAATAGTAGAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAATTCTGGTAGACCTGCACTTTTCAGAAAATAAATAGTAGAATT  328

seq1  GGGTCTGGACGTAAATGGAGGTGGGGGTGACTGTCAGGGAGACAAAACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGACGTAAATGGAGGTGGGGGTGACTGTCAGGGAGACAAAACTG  378

seq1  TGGTTTTCATATAATATATGAGAGAAGAATATACAAATATATCTGTTTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCATATAATATATGAGAGAAGAATATACAAATATATCTGTTTTG  428

seq1  AATAAAGAAAAAGTAAAAGAAAAGAGCTATAATTGTAAATCACACAGCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAAAAGTAAAAGAAAAGAGCTATAATTGTAAATCACACAGCAT  478

seq1  TGTCACTGAGGCATAAGATTCATTATATTAAACATCAACCTGTGTTCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGAGGCATAAGATTCATTATATTAAACATCAACCTGTGTTCTGA  528

seq1  GTCTAGTTCCATCTAGTTTGAGTATGGACAGTGGTGTTGTGCCCTTGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTTCCATCTAGTTTGAGTATGGACAGTGGTGTTGTGCCCTTGTTT  578

seq1  AATACTCCACACAAGTGTTCCTAGTTGACCACTGTGCATTATTGAATTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCCACACAAGTGTTCCTAGTTGACCACTGTGCATTATTGAATTTA  628

seq1  CTTTCTTTGTCCCTAGCTTGCTATGCTTTGGAAGATTCTGGAATCTTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTGTCCCTAGCTTGCTATGCTTTGGAAGATTCTGGAATCTTTTA  678

seq1  GACATGGAATTAGCTGACAGATGTGATAGAGATAAAGTTCTCTCCTTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGAATTAGCTGACAGATGTGATAGAGATAAAGTTCTCTCCTTCTT  728

seq1  GTGCACTGTTTGGTAGCATGCCATGCTACAGGCTTTCACTAGGAAAGATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTGTTTGGTAGCATGCCATGCTACAGGCTTTCACTAGGAAAGATA  778

seq1  GAAGCCAATCCTCTCATCATGCCATCCCATAAGAAGTCAAAATAAATCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAATCCTCTCATCATGCCATCCCATAAGAAGTCAAAATAAATCCC  828

seq1  GTCTGCCTTCAAGTTGCTTCTCATCAGGTATTTGATAGCAGCAAAGAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTTCAAGTTGCTTCTCATCAGGTATTTGATAGCAGCAAAGAGAA  878

seq1  TAATAACTAACATATAGTTCTACCGATTTTTATAGCTGGTTACTAACACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTAACATATAGTTCTACCGATTTTTATAGCTGGTTACTAACACA  928

seq1  CTGCCCAGAAAATGCTAGAACAAGCAAACAGCCCAGTTCCTTCTTTTCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGAAAATGCTAGAACAAGCAAACAGCCCAGTTCCTTCTTTTCTA  978

seq1  CCTTTGAGATGAGGGAATGGATCTCACAACCCAAACCAAGATTTGGGTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGATGAGGGAATGGATCTCACAACCCAAACCAAGATTTGGGTTG  1028

seq1  GGACCCTTAGTATTCAAATTTAACATAAATATTTTAAAGATTATACATGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTTAGTATTCAAATTTAACATAAATATTTTAAAGATTATACATGT  1078

seq1  TGAGTGAGGCTCAATGCAAACAAACAAAGACAAAAAAATAGAGTGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGGCTCAATGCAAACAAACAAAGACAAAAAAATAGAGTGAATTC  1128