BAC Information

Click to search

BAC

Clone NameB6Ng01-169G20
Chromosome14 (Build37)
Map Location 5,437,953 - 5,556,899
singlet/doubletdoublet
Overlap geneLOC100041158, LOC100041501, LOC100041515
Upstream gene2610042L04Rik, LOC100041139, LOC100041151, LOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555, EG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685
Downstream geneLOC100041184, EG666706, LOC100041195, LOC100041545, LOC100041565, LOC100041215, LOC100041226, ENSMUSG00000057445, LOC100041598, LOC100041243, EG666684, LOC100041268, LOC100041279, LOC100041651, LOC100041287, LOC100041299, LOC666637, EG622640, LOC100041333, LOC100041678, LOC100041702, LOC100041363, LOC100041721, LOC100041784, LOC100041735, LOC100041406, LOC100041825, LOC100041421, LOC100041817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169G20.bB6Ng01-169G20.g
ACCDH960409DH960410
length1,232374
definitionDH960409|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G20, 5' end.DH960410|Mus musculus domesticus DNA, BAC clone: B6Ng01-169G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,555,659 - 5,556,899)(5,437,953 - 5,438,300)
sequence
gaattcctggcaaagacaaaggctgctataggtaactgtctgtcttgctt
gggagcacatgagctgtagaattgccatctctgattttgatcctgcacag
gagactctcgagctctggttcttgctttctgccacttcacacaggagcct
ttagatttttctgttgtaaacctgtgggttgaaacactttttggggtaaa
aaaaaaggtcaaaggaccctttcacagaggttgtgtatcagacaatcctt
tatctcagacacttctattatggcttataacagtacaaaaattatagtac
ccaagtagcaatgaaaataatcttaagtttgggaggtcactgcattaaag
catccacagcatttggtaaattgagaaaccctggtcttgacagaagaact
atttgtatcatgtgaggtcttcttgacccccggggctgagtcaggatcta
tagagagctagttaccagcagacccatgtatagcaagtattccccttgtt
tctcctttccaattcatagtgcctttgcccattccttcgtgatgtttctc
cattaggatggacaggtagggacaactgtagtccacttcttctttttagg
aaacatggatccctcttagtgttgggacttttggaagtagcatgagtgtt
tctggaatttgctgttctctaatttttgctttctgagtgcagctcaccta
gatgtcctgagttcttatctaggtcttcctgagaaccagggtctggtggg
gttgatggtgtttcttataagttaataggaaaaggatagcaggggctttg
tatgcattgggtgtttgcagaaacctgcagagccaccttctgatggaact
gaatcagctgaagaagaaaggtagacatgctgaggaggcacaggaataag
aaagtgctggaagatgaggcactggtgctgcagtacttgtgggacttaaa
gggctccataagaccaataggagaggccagtgacttccagagtcaggaac
aacagtagagacaggcagctttgtcaggctaatggttagctcatctgccc
ttgtaacttctagacggctcatccaccttacttgtgctttcatccatcaa
tcttatctcatccccacagcaatctaagtacatacttcatgaacagccaa
ttgtttctaggtccatgtcagcacaaaattttctaggatgactctgtgaa
agtggattatacgcagagcaatccaccctgct
gaattctactgcttcattagatgtcatgtgcttttgagggggaacgttgg
ttaggactctgacatgcttaagagattttgttagcacccaaatctctagg
gactgtggatgtagtagatgtttcacaaaaataaatatgccatctgagtc
aattcatgtgacatacactccaatttcccagggttttcctgtctcacaga
ggcaaatatcttttttctatatgtttaattgtataaaacctggataaaat
tttctaactgtgcattcctttatagtgtgcatttttccatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_5555659_5556899
seq2: B6Ng01-169G20.b_44_1275 (reverse)

seq1  AGCAGAGGTGGATTTGCT-TGCTGATAATCCACTTTCTCACAAGAAGCTC  49
      ||||| |||||| ||||| |||  ||||||||||||| || |      ||
seq2  AGCAG-GGTGGA-TTGCTCTGCGTATAATCCACTTTCACAGA-----GTC  43

seq1  ATTCCCCAGAAATATTTGTGCTTGGACATAGACCT--GAACAATTGGCTG  97
      ||  || |||||  ||||||||  ||||| |||||   ||||||||||||
seq2  AT--CCTAGAAAATTTTGTGCT--GACATGGACCTAGAAACAATTGGCTG  89

seq1  -TCATGAGGTATGTACTTAGATTGCTGTGTGGATGAG-TAAGA-TGATGG  144
       |||||| ||||||||||||||||||||| ||||||| ||||| ||||||
seq2  TTCATGAAGTATGTACTTAGATTGCTGTGGGGATGAGATAAGATTGATGG  139

seq1  ATGAAAGCACAGGT-AGGTGGATGAGCTCGTCTAGAAGTTACAAGGGCAG  193
      ||||||||||| || |||||||||||| ||||||||||||||||||||||
seq2  ATGAAAGCACAAGTAAGGTGGATGAGC-CGTCTAGAAGTTACAAGGGCAG  188

seq1  ATGGAGCTAACCATTAGCCTGACAAAGCTGCCTGTCTCTACCTGTTGTTC  243
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AT-GAGCTAACCATTAGCCTGACAAAGCTGCCTGTCTCTA-CTGTTGTTC  236

seq1  CTGACTCTGGAAGTCACTGGCCTCTTCCTATTGGTCCTTATGGAGCCCCT  293
      |||||||||||||||||||||||| |||||||||| ||||||||| ||||
seq2  CTGACTCTGGAAGTCACTGGCCTC-TCCTATTGGT-CTTATGGAG-CCCT  283

seq1  TTAAGTCCCACAAGTACTGCAGCACCAGTGCCTCATCTTCCAGCACTTTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCCCACAAGTACTGCAGCACCAGTGCCTCATCTTCCAGCACTTTC  333

seq1  TTATTCCTGTGCCTCCTCAGCATGTCTACC-TTCTTCTTCAGCTGATTCA  392
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTATTCCTGTGCCTCCTCAGCATGTCTACCTTTCTTCTTCAGCTGATTCA  383

seq1  GTTCCATCAGAAGGTGGCTCTGCAGGTTTCTGCAAACACCCAATGCATAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCAGAAGGTGGCTCTGCAGGTTTCTGCAAACACCCAATGCATAC  433

seq1  AAAGCCCCTGCTATCCTTTTCCTATTAACTTATAAGAAACACCATCAACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCTGCTATCCTTTTCCTATTAACTTATAAGAAACACCATCAACC  483

seq1  CCACCAGACCCTGGTTCTCAGGAAGACCTAGATAAGAACTCAGGACATCT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGACCCTGGTTCTCAGGAAGACCTAGATAAGAACTCAGGACATCT  533

seq1  AGGTGAGCTGCACTCAGAAAGCAAAAATTAGAGAACAGCAAATTCCAGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGCTGCACTCAGAAAGCAAAAATTAGAGAACAGCAAATTCCAGAA  583

seq1  ACACTCATGCTACTTCCAAAAGTCCCAACACTAAGAGGGATCCATGTTTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATGCTACTTCCAAAAGTCCCAACACTAAGAGGGATCCATGTTTC  633

seq1  CTAAAAAGAAGAAGTGGACTACAGTTGTCCCTACCTGTCCATCCTAATGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGAAGAAGTGGACTACAGTTGTCCCTACCTGTCCATCCTAATGG  683

seq1  AGAAACATCACGAAGGAATGGGCAAAGGCACTATGAATTGGAAAGGAGAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATCACGAAGGAATGGGCAAAGGCACTATGAATTGGAAAGGAGAA  733

seq1  ACAAGGGGAATACTTGCTATACATGGGTCTGCTGGTAACTAGCTCTCTAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGGAATACTTGCTATACATGGGTCTGCTGGTAACTAGCTCTCTAT  783

seq1  AGATCCTGACTCAGCCCCGGGGGTCAAGAAGACCTCACATGATACAAATA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGACTCAGCCCCGGGGGTCAAGAAGACCTCACATGATACAAATA  833

seq1  GTTCTTCTGTCAAGACCAGGGTTTCTCAATTTACCAAATGCTGTGGATGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTGTCAAGACCAGGGTTTCTCAATTTACCAAATGCTGTGGATGC  883

seq1  TTTAATGCAGTGACCTCCCAAACTTAAGATTATTTTCATTGCTACTTGGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCAGTGACCTCCCAAACTTAAGATTATTTTCATTGCTACTTGGG  933

seq1  TACTATAATTTTTGTACTGTTATAAGCCATAATAGAAGTGTCTGAGATAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAATTTTTGTACTGTTATAAGCCATAATAGAAGTGTCTGAGATAA  983

seq1  AGGATTGTCTGATACACAACCTCTGTGAAAGGGTCCTTTGACCTTTTTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTCTGATACACAACCTCTGTGAAAGGGTCCTTTGACCTTTTTTT  1033

seq1  TTACCCCAAAAAGTGTTTCAACCCACAGGTTTACAACAGAAAAATCTAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCAAAAAGTGTTTCAACCCACAGGTTTACAACAGAAAAATCTAAA  1083

seq1  GGCTCCTGTGTGAAGTGGCAGAAAGCAAGAACCAGAGCTCGAGAGTCTCC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGTGTGAAGTGGCAGAAAGCAAGAACCAGAGCTCGAGAGTCTCC  1133

seq1  TGTGCAGGATCAAAATCAGAGATGGCAATTCTACAGCTCATGTGCTCCCA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGATCAAAATCAGAGATGGCAATTCTACAGCTCATGTGCTCCCA  1183

seq1  AGCAAGACAGACAGTTACCTATAGCAGCCTTTGTCTTTGCCAGGAATTC  1241
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGACAGACAGTTACCTATAGCAGCCTTTGTCTTTGCCAGGAATTC  1232

seq1: chr14_5437953_5438300
seq2: B6Ng01-169G20.g_68_415

seq1  GAATTCTACTGCTTCATTAGATGTCATGTGCTTTTGAGGGGGAACGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTGCTTCATTAGATGTCATGTGCTTTTGAGGGGGAACGTTGG  50

seq1  TTAGGACTCTGACATGCTTAAGAGATTTTGTTAGCACCCAAATCTCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACTCTGACATGCTTAAGAGATTTTGTTAGCACCCAAATCTCTAGG  100

seq1  GACTGTGGATGTAGTAGATGTTTCACAAAAATAAATATGCCATCTGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGATGTAGTAGATGTTTCACAAAAATAAATATGCCATCTGAGTC  150

seq1  AATTCATGTGACATACACTCCAATTTCCCAGGGTTTTCCTGTCTCACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGTGACATACACTCCAATTTCCCAGGGTTTTCCTGTCTCACAGA  200

seq1  GGCAAATATCTTTTTTCTATATGTTTAATTGTATAAAACCTGGATAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATATCTTTTTTCTATATGTTTAATTGTATAAAACCTGGATAAAAT  250

seq1  TTTCTAACTGTGCATTCCTTTATAGTGTGCATTTTTCCATATATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACTGTGCATTCCTTTATAGTGTGCATTTTTCCATATATATATAT  300

seq1  ATATATATATATATATATATATATATATATATATATATATATATATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATATAT  348