BAC Information

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BAC

Clone NameB6Ng01-169H22
Chromosome14 (Build37)
Map Location 84,906,490 - 84,907,456
singlet/doubletsinglet
Overlap genePcdh17
Upstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, 9630013A20Rik
Downstream geneLOC629794, LOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169H22.g
ACCDH960460
length955
definitionDH960460|Mus musculus domesticus DNA, BAC clone: B6Ng01-169H22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctatggcacacaccaattaaccaaagaaagacagatcagtaatc
acaattacagaaagagctgagagaatatgctcttaaaggtaggaaattat
tagattcctccatcttccccatccctaatttaaaaagagacagtgagggt
atggattgttttatgggcacagactttaagaacacaaatcaatggaacat
accagaagtttacataaacatccaaatgtctctttgacacaacaacaatg
ccttaaagggaatgcacacacacatagcagtaacacagactgaagtcatt
cagatttaccacagctagtcattatctaggacactgagagatcctggcaa
cagctaatctaataattctgccattatctctaatacttctgatctgtgcc
tggagctaaacagttgtcaggatggagctctatgtaactaaatctgagat
gggggaaggggagggatgtcaaggctagtataattacctattttttcttt
tacctttaactgtgtaatagtttatcctgatgttctatgcgatgctaaag
ttttattttcttttctcctgatgtgaatttgtgactgtacatttgtgaat
tttcatctccaaaatcccgctttatctgtgtgcataatacactccctgag
ttttcataactctatagctagagtgaattcacctcagagtgggataacgt
aaatgtgtatattctgagtgagtctcattgctcaatgatttcttcataat
agctaaattctcttttactacctgggtaaaattatgaaatttaaaaattt
gaattatgaaaaatataatgtgtctttggtgttgttcagaaacacagact
aacagcggtcaatagtctacataccagttccaaggaaatgaaaatatcag
tatgatttgtagccctctgatggttggggttgatgttgatttagcttagc
tggaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84906490_84907456
seq2: B6Ng01-169H22.g_65_1019 (reverse)

seq1  TTCCAGCTTAAAGCAAAATCAGACATCAAACCCCAGCCATCAGAGGGCTA  50
      ||||||||  |||| |||||| ||||| ||||||| ||||||||||||||
seq2  TTCCAGCT--AAGCTAAATCA-ACATC-AACCCCAACCATCAGAGGGCTA  46

seq1  CAAAATCATACTGATTATTTTTCATTTCCTTGGGAAACTGGTAATGTATG  100
      | |||||||||||||   |||||||||||||||  ||||||| |||||  
seq2  C-AAATCATACTGAT--ATTTTCATTTCCTTGG--AACTGGT-ATGTA--  88

seq1  GACTATTGACCGCTGTTTGTTTGTGTTTCTGAACAACACCAAAAGACACA  150
      ||||||||||||||||| || ||||||||||||||||||| |||||||||
seq2  GACTATTGACCGCTGTTAGTCTGTGTTTCTGAACAACACC-AAAGACACA  137

seq1  TTATATTTTTCATAATTCCAATTTTTTAAATTTCATAATTTTACCCAGGT  200
      ||||||||||||||||| ||| ||||||||||||||||||||||||||||
seq2  TTATATTTTTCATAATT-CAAATTTTTAAATTTCATAATTTTACCCAGGT  186

seq1  AGT-AAAGAGAATTTAGCTATTATGAAGAAATCATTGAGCAATGAGACTC  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAGAGAATTTAGCTATTATGAAGAAATCATTGAGCAATGAGACTC  236

seq1  ACTCAGAATATACACATTTACGTTATCCCACTCTGAGGTGAATTCACTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAATATACACATTTACGTTATCCCACTCTGAGGTGAATTCACTCT  286

seq1  AGCTATAGAGTTATG-AAACTCAGGGAGTGTATTATGCACACAGATAAAG  348
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCTATAGAGTTATGAAAACTCAGGGAGTGTATTATGCACACAGATAAAG  336

seq1  CGGGATTTTGGAGATGAAAATTCACAAATGTACAGTCACAAATTCACATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATTTTGGAGATGAAAATTCACAAATGTACAGTCACAAATTCACATC  386

seq1  AGGAGAAAAGAAAATAAAACTTTAGCATCGCATAGAACATCAGGATAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAAGAAAATAAAACTTTAGCATCGCATAGAACATCAGGATAAAC  436

seq1  TATTACACAGTTAAAGGTAAAAGAAAAAATAGGTAATTATACTAGCCTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACACAGTTAAAGGTAAAAGAAAAAATAGGTAATTATACTAGCCTTG  486

seq1  ACATCCCTCCCCTTCCCCCATCTCAGATTTAGTTACATAGAGCTCCATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCTCCCCTTCCCCCATCTCAGATTTAGTTACATAGAGCTCCATCC  536

seq1  TGACAACTGTTTAGCTCCAGGCACAGATCAGAAGTATTAGAGATAATGGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTGTTTAGCTCCAGGCACAGATCAGAAGTATTAGAGATAATGGC  586

seq1  AGAATTATTAGATTAGCTGTTGCCAGGATCTCTCAGTGTCCTAGATAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATTAGATTAGCTGTTGCCAGGATCTCTCAGTGTCCTAGATAATG  636

seq1  ACTAGCTGTGGTAAATCTGAATGACTTCAGTCTGTGTTACTGCTATGTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTGTGGTAAATCTGAATGACTTCAGTCTGTGTTACTGCTATGTGT  686

seq1  GTGTGCATTCCCTTTAAGGCATTGTTGTTGTGTCAAAGAGACATTTGGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATTCCCTTTAAGGCATTGTTGTTGTGTCAAAGAGACATTTGGAT  736

seq1  GTTTATGTAAACTTCTGGTATGTTCCATTGATTTGTGTTCTTAAAGTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTAAACTTCTGGTATGTTCCATTGATTTGTGTTCTTAAAGTCTG  786

seq1  TGCCCATAAAACAATCCATACCCTCACTGTCTCTTTTTAAATTAGGGATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATAAAACAATCCATACCCTCACTGTCTCTTTTTAAATTAGGGATG  836

seq1  GGGAAGATGGAGGAATCTAATAATTTCCTACCTTTAAGAGCATATTCTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATGGAGGAATCTAATAATTTCCTACCTTTAAGAGCATATTCTCT  886

seq1  CAGCTCTTTCTGTAATTTTGATTATTGATCTGTCTTTCTTTGGTTAATTG  948
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  CAGCTCTTTCTGTAATTGTGATTACTGATCTGTCTTTCTTTGGTTAATTG  936

seq1  GTGTGTGCCATAGGAATTC  967
      |||||||||||||||||||
seq2  GTGTGTGCCATAGGAATTC  955