BAC Information

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BAC

Clone NameB6Ng01-171C18
Chromosome14 (Build37)
Map Location 56,309,613 - 56,310,535
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2
Downstream geneTgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171C18.bB6Ng01-171C18.g
ACCGA000125GA000126
length1,203933
definitionB6Ng01-171C18.b B6Ng01-171C18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgtgtggctcaagctgacacactcacggtgattctgtcttgc
gcgcactcgactggccaggaagaatgacgctgcaacaggatccttctgca
cacgtttattgggagagcttgattgtagaggcgaaaagacttcgagccca
gaactagtgctgcttttataggcctaggaggggcgtgtctcacacccgga
ttggttatgcactaagcctcatttgcatgttcctcatctgattggctact
ctctctcagtaccttacagaacctcattatcatacctcatttgcatgtct
cacatctgattggttatactctcagtaccttacagaacctcattatcata
cctcatttgcatgtctcacatctgattggttatactcccagtaccttaca
gaacctcattatcatgcctgggccaggcagtgtctttgcaaaaaacttta
ctgcatatgtacacattggttgtttgtccaatcttatgtgtggtggccag
cagtagtcagtgccactcagcaacggcacatgtggcttcccacatctccc
cctgtttgttttaataaaatgaggctggactaggcctgtgcaattatgcc
catccgccgtggctcctgttttaggtcgttcctctaatgtcacagcctta
cccgtcatagggtaaccctatcgccaccgggccccatgtcttaggttggg
ctgtgcacgaggaaagttgcccgtctctggataccgcagtgctgtgtgac
aataactgctaaatgacctagggcgaactctgcaaaagaggccagccaaa
aaatgaattagtggggaaatcatggatcaccctattgatgagcaagggct
gatcaatgatcggttgagtctctctcatctaatctcatgctggactaatt
cttgaagcatagaataaccaaatttcaggggagggagccgtttttcaata
gcttaaaagtggctggagtatatcaccttggtcacgttttggttggagtt
ctggaatttgcataccaattcagaagcaatgaaccacctagtccacaagc
ataatggcagccattacaaatcactctccactcattcctaaaggtaggga
aaagccaggtaggtagaggttaaggtctcaaggttactggttccacctgg
tccataggtcagggatctgcatcggcagcctcggtcgtgcaacttctccg
agc
tccgcggaattcccttccttccttccttccttccttacttccttccttcc
ttccttcctaacttcctaacttcctaacttcctttctctctccctcctcc
cctccctccctccctccctccattccttcctccccttcccccctttcttt
tctttctctatctcttctttctttggtccttctttttaaagatttattta
tatgtgtaagtgcaccaagtgagcctgctgtctgtagagggtgtgtgatc
tcctggaactggagttacaaatggctgaacctccatgttggtgctgggaa
ctgaaccccagtcctctagaaatgcacccagtgctctcaaccactgaaga
gtctctccagccccagggttagtttctttgagggcaggctttgttccggg
tggaataatagctccagaagttcttttattgtacaggagcctgaagaggc
tacctcctgtagccaggcaggactcccagtggagggataagggcaccgac
ccacacacaaaatctttgacccaaattttgtcctgtcaacaagaagtatg
gggacaaagatggaacagaggctgagggaactgccaaccaatgactagct
caacttgagacacatcccacggggcaagcaccaatctctgacactattaa
tgagggctataacaggaacccaacataactgtcctctgagaggctccacc
cagtagctgactaaaacagatgcagagacccacagccaaacattagatag
aattggagagtctcatggaaaaggtgagggaagaattgagggactatgag
gggatagggactctacagaaaaccaaaaagtcaactaaccttagactctt
ttgggggctctcagagactgaccacaccacccaaagggcaatacatgggc
ctggacctaggccctagccacatatgtagtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56309613_56310535
seq2: B6Ng01-171C18.g_67_993

seq1  GAATTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAATTCCCTTCCTTCCTTCCTTCCTTCCTTACTTCCTTCCTTCCTTCCTT  50

seq1  CCTAACTTCCTAACTTCCTAACTTCCTTTCTCTCTCCCTCCTCCCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTCCTAACTTCCTAACTTCCTTTCTCTCTCCCTCCTCCCCTCCC  100

seq1  TCCCTCCCTCCCTCCATTCCTTCCTCCCCTTCCCCCCTTTCTTTTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTCCATTCCTTCCTCCCCTTCCCCCCTTTCTTTTCTTTC  150

seq1  TCTATCTCTTCTTTCTTTGGTCCTTCTTTTTAAAGATTTATTTATATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCTTCTTTCTTTGGTCCTTCTTTTTAAAGATTTATTTATATGTG  200

seq1  TAAGTGCACCAAGTGAGCCTGCTGTCTGTAGAGGGTGTGTGATCTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCACCAAGTGAGCCTGCTGTCTGTAGAGGGTGTGTGATCTCCTGG  250

seq1  AACTGGAGTTACAAATGGCTGAACCTCCATGTTGGTGCTGGGAACTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGTTACAAATGGCTGAACCTCCATGTTGGTGCTGGGAACTGAAC  300

seq1  CCCAGTCCTCTAGAAATGCACCCAGTGCTCTCAACCACTGAAGAGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCCTCTAGAAATGCACCCAGTGCTCTCAACCACTGAAGAGTCTCT  350

seq1  CCAGCCCCAGGGTTAGTTTCTTTGAGGGCAGGCTTTGTTCCGGGTGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCAGGGTTAGTTTCTTTGAGGGCAGGCTTTGTTCCGGGTGGAAT  400

seq1  AATAGCTCCAGAAGTTCTTTTATTGTACAGGAGCCTGAAGAGGCTACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTCCAGAAGTTCTTTTATTGTACAGGAGCCTGAAGAGGCTACCTC  450

seq1  CTGTAGCCAGGCAGGACTCCCAGTGGAGGGATAAGGGCACCGACCCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCAGGCAGGACTCCCAGTGGAGGGATAAGGGCACCGACCCACAC  500

seq1  ACAAAATCTTTGACCCAAATTTTGTCCTGTCAACAAGAAGTATGGGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTTTGACCCAAATTTTGTCCTGTCAACAAGAAGTATGGGGACA  550

seq1  AAGATGGAACAGAGGCTGAGGGAACTGCCAACCAATGACTAGCTCAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAACAGAGGCTGAGGGAACTGCCAACCAATGACTAGCTCAACTT  600

seq1  GAGACACATCCCACGGGGCAAGCACCAATCTCTGACACTATTAATGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACATCCCACGGGGCAAGCACCAATCTCTGACACTATTAATGAGGG  650

seq1  CTATAACAGGAACCCAACATAACTGTCCTCTGAGAGGCTCCACCCAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACAGGAACCCAACATAACTGTCCTCTGAGAGGCTCCACCCAGTAG  700

seq1  CTGACTAAAACAGATGCAGAGACCCACAGCCAAACATTAGATAGAATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAAAACAGATGCAGAGACCCACAGCCAAACATTAGATAGAATTGG  750

seq1  AGAGTCTCATGGAAAAGGTGAGGGAAGAATTGAGGGACTATGAGGGGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTCATGGAAAAGGTGAGGGAAGAATTGAGGGACTATGAGGGGATA  800

seq1  GGGACTCTACAAGAAAACCAAAAAGTCAACTAACC-TAGA--CCTTTGGG  847
      |||||||||| |||||||||||||||||||||||| ||||  | ||||||
seq2  GGGACTCTAC-AGAAAACCAAAAAGTCAACTAACCTTAGACTCTTTTGGG  849

seq1  GGCTCCCAGAGACTGAACCACACCACCCAAAGGGC-ATACATGGG-CTGG  895
      ||||| ||||||||| ||||||||||||||||||| ||||||||| ||||
seq2  GGCTCTCAGAGACTG-ACCACACCACCCAAAGGGCAATACATGGGCCTGG  898

seq1  ACCTAGGCCCTAG-CACATATGTAGTAGA  923
      ||||||||||||| |||||||||||||||
seq2  ACCTAGGCCCTAGCCACATATGTAGTAGA  927