BAC Information

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BAC

Clone NameB6Ng01-171F09
Chromosome14 (Build37)1 (Build37)
Map Location 94,869,783 - 94,869,97528,937,144 - 28,938,043
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171F09.bB6Ng01-171F09.g
ACCGA000250GA000251
length234902
definitionB6Ng01-171F09.b B6Ng01-171F09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,869,783 - 94,869,975)(28,937,144 - 28,938,043)
sequence
tcaactgaggaataccgaatggctaagaagcacctaaaaaaatgttcaac
atccttaatcatcagggaaatacaaatcaaaacaaccctgagattccacc
tcacaccagtcagaatggctaagatcaaaaatttaggtaacagcagatgc
tggcaaggatgtggtgaaagaggaacacttctctattgttggtgggattg
caagcttgtacaaccactctggaaatcagtctgg

gaattccatgaaactagatgttctttgatgtattgattcttaagcaatta
aaaaatagaggcatggggcacagcacagcacagtcctagtggcccaggtg
catgttgtgtgctctcatcttgggaacaatgtaattactgcacaatggta
gttccagattaatgcatgatatgcaaagaaagtttgaagaaatattagaa
aattaaatagagccaatattgggaccccaagaaagaaaaatctattgaag
ttatgaaataagctttgcataacacttgagagtggttcctcgataagcaa
gtatagagtatgtaaaatcttatattagtaaaactaagtcaaaacactgg
aactcttaggagagtcattgtgtgctatgtgcagaagcagaaagctagta
gaactattgaattaaggtttaagttgattctttctggccactgcctggca
gcttttgcccatgtcatttatcattagagcttcacaagaaaatgcaagca
gctggcctcggagttctgaacactgatttataataagttaaagtttaaat
catgataagtttgcaattattattattttggctataggctgggaataggg
aagcttgaaactttagggaacaactctaattcttgatcctttgtggtatg
tggttactcttttgtatttgatttggcaatgattgtacaatgtctttttt
tctacttacttttggagtatcaataaaagactggggcaagaaaaaggcta
aagagccagtcgagagcatgtagagagtgagtgaggagtatgcgtgaggg
gaatgtggagagcaaatgaagaatgagagagagagagagagagagcatga
gagagcatgttgaagagtgaagtggaagagagaatgtgaggtgtgcatgg
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94869783_94869975
seq2: B6Ng01-171F09.b_90_283 (reverse)

seq1  CCAGACTGATTTCCAGAGTGGTTGTACAAGCTTTCAATCCCACCCACAAT  50
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  CCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAAT  50

seq1  GGAAGAGTGTTCCTCTGTCTCCACATCCTTGCTAGCATCTGCTGTCACCT  100
       ||  ||||||||||| || |||||||||||| |||||||||||| ||||
seq2  AGAGAAGTGTTCCTCTTTCACCACATCCTTGCCAGCATCTGCTGTTACCT  100

seq1  GAGTTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGCAT  150
       | ||||||||||||||||||||||||||||||||||||||||||||  |
seq2  AAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGT  150

seq1  TATTTTTACTTGCATTT-TCTGATGTCTAAGGATGTTGAACATT  193
      | |||| | ||| ||||  ||||||  |||||||||||||||||
seq2  TGTTTTGATTTGTATTTCCCTGATGATTAAGGATGTTGAACATT  194


seq1: chr1_28937144_28938043
seq2: B6Ng01-171F09.g_68_969 (reverse)

seq1  CTCCATGCACACCTCACATTCTCTC-TCCAC-TCACTCTTC-ACATGCTC  47
      ||||||||||||||||||||||||| ||||| ||||||||| ||||||||
seq2  CTCCATGCACACCTCACATTCTCTCTTCCACTTCACTCTTCAACATGCTC  50

seq1  TTCTCATGCTCTCTCTCTCTCTCTCTCTCATTCTTCATTTGCTCTCCACA  97
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTCATGCTCTCTCTCTCTCTCTCTCTCATTCTTCATTTGCTCTCCACA  99

seq1  TTCCCCTCACGCATACTCCTCACTCACTCTCTACATGCTCTCGACTGGCT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCACGCATACTCCTCACTCACTCTCTACATGCTCTCGACTGGCT  149

seq1  CTTTAGCCTTTTTCTTGCCCCAGTCTTTTATTGATACTCCAAAAGTAAGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCCTTTTTCTTGCCCCAGTCTTTTATTGATACTCCAAAAGTAAGT  199

seq1  AGAAAAAAAGACATTGTACAATCATTGCCAAATCAAATACAAAAGAGTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAGACATTGTACAATCATTGCCAAATCAAATACAAAAGAGTAA  249

seq1  CCACATACCACAAAGGATCAAGAATTAGAGTTGTTCCCTAAAGTTTCAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACCACAAAGGATCAAGAATTAGAGTTGTTCCCTAAAGTTTCAAG  299

seq1  CTTCCCTATTCCCAGCCTATAGCCAAAATAATAATAATTGCAAACTTATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTATTCCCAGCCTATAGCCAAAATAATAATAATTGCAAACTTATC  349

seq1  ATGATTTAAACTTTAACTTATTATAAATCAGTGTTCAGAACTCCGAGGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTAAACTTTAACTTATTATAAATCAGTGTTCAGAACTCCGAGGCC  399

seq1  AGCTGCTTGCATTTTCTTGTGAAGCTCTAATGATAAATGACATGGGCAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTGCATTTTCTTGTGAAGCTCTAATGATAAATGACATGGGCAAA  449

seq1  AGCTGCCAGGCAGTGGCCAGAAAGAATCAACTTAAACCTTAATTCAATAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCAGGCAGTGGCCAGAAAGAATCAACTTAAACCTTAATTCAATAG  499

seq1  TTCTACTAGCTTTCTGCTTCTGCACATAGCACACAATGACTCTCCTAAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTAGCTTTCTGCTTCTGCACATAGCACACAATGACTCTCCTAAGA  549

seq1  GTTCCAGTGTTTTGACTTAGTTTTACTAATATAAGATTTTACATACTCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGTGTTTTGACTTAGTTTTACTAATATAAGATTTTACATACTCTA  599

seq1  TACTTGCTTATCGAGGAACCACTCTCAAGTGTTATGCAAAGCTTATTTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTTATCGAGGAACCACTCTCAAGTGTTATGCAAAGCTTATTTCA  649

seq1  TAACTTCAATAGATTTTTCTTTCTTGGGGTCCCAATATTGGCTCTATTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCAATAGATTTTTCTTTCTTGGGGTCCCAATATTGGCTCTATTTA  699

seq1  ATTTTCTAATATTTCTTCAAACTTTCTTTGCATATCATGCATTAATCTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAATATTTCTTCAAACTTTCTTTGCATATCATGCATTAATCTGG  749

seq1  AACTACCATTGTGCAGTAATTACATTGTTCCCAAGATGAGAGCACACAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCATTGTGCAGTAATTACATTGTTCCCAAGATGAGAGCACACAAC  799

seq1  ATGCACCTGGGCCACTAGGACTGTGCTGTGCTGTGCCCCATGCCTCTATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTGGGCCACTAGGACTGTGCTGTGCTGTGCCCCATGCCTCTATT  849

seq1  TTTTAATTGCTTAAGAATCAATACATCAAAGAACATCTAGTTTCATGGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGCTTAAGAATCAATACATCAAAGAACATCTAGTTTCATGGAA  899

seq1  TTC  900
      |||
seq2  TTC  902


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