BAC Information

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BAC

Clone NameB6Ng01-171F23
Chromosome14 (Build37)
Map Location 56,309,613 - 56,310,538
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2
Downstream geneTgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171F23.bB6Ng01-171F23.g
ACCGA000276GA000277
length1,157935
definitionB6Ng01-171F23.b B6Ng01-171F23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgtgtggctcaagctgacacactcacggtgattctgtcttgc
gcgcactcgactggccaggaagaatgacgctgcaacaggatccttctgca
cacgtttattgggagagcttgattgtagaggcgaaaagacttcgagccca
gaactagtgctgcttttataggcctaggaggggcgtgtctcacacccgga
ttggttatgcactaagcctcatttgcatgttcctcatctgattggctact
ctctctcagtaccttacagaacctcattatcatacctcatttgcatgtct
cacatctgattggttatactctcagtaccttacagaacctcattatcata
cctcatttgcatgtctcacatctgattggttatactcccagtaccttaca
gaacctcattatcatgcctgggccaggcagtgtctttgcaaaaaacttta
ctgcatatgtacacattggttgtttgtccaatcttatgtgtggtggccag
cagtagtcagtgccactcagcaacggcacatgtggcttcccacatctccc
cctgtttgttttaataaaatgaggctggactaggcctgtgcaattatgcc
catccgccgtggctcctgttttaggtcgttcctctaatgtcacagcctta
cccgtcatagggtaaccctatcgccaccgggccccatgtcttaggttggg
ctgtgcacgaggaaagttgcccgtctctggataccgcagtgctgtgtgac
aataactgctaaatgacctagggcgaactctgcaaaagaggccagccaaa
aaatgaattagtggggaaatcatgatcaccctattgatgagcaagggctg
atcaatgatcgttgagtctctctcatctaatctcatgctgactaattctt
gagcatagataccaaatttcagggaggagccgttttcatagctaaagtgc
tgagtatatcaacttgtcacgttttgtgagtctgaatttgcataccatca
gagcatgaacacagtcacagcatatggcagcatcaaacaaatcatccacc
caatgtaagtaagaaagcaaggttagtcaagtaagtctcatgtctggtcc
actctgtctcatatgtcagatcgtaactgagcctgtctgaccattcaggc
ttctgcg
tccgcggaattcccttccttccttccttccttccttccttccttccttcc
ttccttcctaacttcctaacttcctaacttcctttctctctccctcctcc
cctccctccctccctccctccattccttcctccccttcccccctttcttt
tctttctctatctcttctttctttggtccttctttttaaagatttattta
tatgtgtaagtgcaccaagtgagcctgctgtctgtagagggtgtgtgatc
tcctggaactggagttacaaatggctgaacctccatgttggtgctgggaa
ctgaaccccagtcctctagaaatgcacccagtgctctcaaccactgaaga
gtctctccagccccagggttagtttctttgagggcaggctttgttccggg
tggaataatagctccagaagttcttttattgtacaggagcctgaagaggc
tacctcctgtagccaggcaggactcccagtggagggataagggcaccgac
ccacacacaaaatctttgacccaaattttgtcctgtcaacaagaagtatg
gggacaaagatggaacagaggctgagggaactgccaaccaatgactagct
caacttgagacacatcccacggggcaagcaccaatctctgacactattaa
tgagggctataacaggaacccaacataactgtcctctgagaggctccacc
cagtagctgactaaaacagatgcagagacccacagcccaacattagatag
aattggagagtctcatgggaaaaggtgagggaagaattgagggactatga
ggggatagggactctacaagaaaaccaaaaagtcaactaacctagacctt
ttgggggctcccagagactgaaccacaccacccaaaggccatacatgggg
ctggacctaggccctagcacatatgtagtagatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56309613_56310538
seq2: B6Ng01-171F23.g_67_995

seq1  GAATTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT  50

seq1  CCTAACTTCCTAACTTCCTAACTTCCTTTCTCTCTCCCTCCTCCCCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTCCTAACTTCCTAACTTCCTTTCTCTCTCCCTCCTCCCCTCCC  100

seq1  TCCCTCCCTCCCTCCATTCCTTCCTCCCCTTCCCCCCTTTCTTTTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTCCATTCCTTCCTCCCCTTCCCCCCTTTCTTTTCTTTC  150

seq1  TCTATCTCTTCTTTCTTTGGTCCTTCTTTTTAAAGATTTATTTATATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCTTCTTTCTTTGGTCCTTCTTTTTAAAGATTTATTTATATGTG  200

seq1  TAAGTGCACCAAGTGAGCCTGCTGTCTGTAGAGGGTGTGTGATCTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCACCAAGTGAGCCTGCTGTCTGTAGAGGGTGTGTGATCTCCTGG  250

seq1  AACTGGAGTTACAAATGGCTGAACCTCCATGTTGGTGCTGGGAACTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGTTACAAATGGCTGAACCTCCATGTTGGTGCTGGGAACTGAAC  300

seq1  CCCAGTCCTCTAGAAATGCACCCAGTGCTCTCAACCACTGAAGAGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTCCTCTAGAAATGCACCCAGTGCTCTCAACCACTGAAGAGTCTCT  350

seq1  CCAGCCCCAGGGTTAGTTTCTTTGAGGGCAGGCTTTGTTCCGGGTGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCAGGGTTAGTTTCTTTGAGGGCAGGCTTTGTTCCGGGTGGAAT  400

seq1  AATAGCTCCAGAAGTTCTTTTATTGTACAGGAGCCTGAAGAGGCTACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTCCAGAAGTTCTTTTATTGTACAGGAGCCTGAAGAGGCTACCTC  450

seq1  CTGTAGCCAGGCAGGACTCCCAGTGGAGGGATAAGGGCACCGACCCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCAGGCAGGACTCCCAGTGGAGGGATAAGGGCACCGACCCACAC  500

seq1  ACAAAATCTTTGACCCAAATTTTGTCCTGTCAACAAGAAGTATGGGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTTTGACCCAAATTTTGTCCTGTCAACAAGAAGTATGGGGACA  550

seq1  AAGATGGAACAGAGGCTGAGGGAACTGCCAACCAATGACTAGCTCAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAACAGAGGCTGAGGGAACTGCCAACCAATGACTAGCTCAACTT  600

seq1  GAGACACATCCCACGGGGCAAGCACCAATCTCTGACACTATTAATGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACATCCCACGGGGCAAGCACCAATCTCTGACACTATTAATGAGGG  650

seq1  CTATAACAGGAACCCAACATAACTGTCCTCTGAGAGGCTCCACCCAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACAGGAACCCAACATAACTGTCCTCTGAGAGGCTCCACCCAGTAG  700

seq1  CTGACTAAAACAGATGCAGAGACCCACAGCCAAACATTAGATAGAATTGG  750
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGACTAAAACAGATGCAGAGACCCACAGCCCAACATTAGATAGAATTGG  750

seq1  AGAGTCTCAT-GGAAAAGGTGAGGGAAGAATTGAGGGACTATGAGGGGAT  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTCATGGGAAAAGGTGAGGGAAGAATTGAGGGACTATGAGGGGAT  800

seq1  AGGGACTCTACAAGAAAACCAAAAAGTCAACTAACCTAGACC-TTTGGGG  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGGACTCTACAAGAAAACCAAAAAGTCAACTAACCTAGACCTTTTGGGG  850

seq1  GCTCCCAGAGACTGAACCACACCACCCAAAGGGCATACAT-GGGCTGGAC  897
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  GCTCCCAGAGACTGAACCACACCACCCAAAGGCCATACATGGGGCTGGAC  900

seq1  CTAGGCCCTAGCACATATGTAGTAGATGT  926
      |||||||||||||||||||||||||||||
seq2  CTAGGCCCTAGCACATATGTAGTAGATGT  929